LOC120555812 (snx1,LOC102784823)


Basic Information

Item Value
gene id LOC120555812
gene name snx1,LOC102784823
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15580040 ~ 15591856 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794905.1
TTCCGCCTACGTCACTCCCTCTCACAACACGGAATATGGCGGCCAGCTCAGATCGGATTCCTCCTCCTTTCCCCGCCACGGAGGAGCCGGGAGTCGGACCGTCTGACATGGCAGATGGAGACAGCGACGAGGGAGAGGACATATTCAGTAACCCTATGGCTGTGAGTCGAGGAGTTTCTCAGCCGGACAATGTCAACGAAGAACCTCCAGATCTGTtcagtgaggaggaggaggccagCAGCACAACTGTCAAATCCAACGGAGTTCACTCTGATGATGACAACGACCTGTTTGCTGATGAAGAGGCACACGTTGAGCTGAGCACAGACGCACCTGGCAGCTCTGCCCGGAAGGAGCCCTCCACCTCCTCTGGCCCTCGTCCCGCCTCCTCCTTCACTCGGAGCCCTGCAGCCATGCAGCCCACATCTCTGGAGCAGTTGGAGGAGGAAGAATCCAAGGATAGTTTTGATGTGGATGTTGCGGTCACCAACCCTGAGAAAATTGGAGATGGCATGAATGCATATGTGGCCTACAAAGTATCCACCAGGACCTCCTTGGCCATGTTCAGGAGTAAAACCTTCTCTGTGAGGAGGCGTTATAGTGACTTCCTGGGTCTTTATGAGAAGCTGTCAGTTAAGCAGTCGCTCCACGGCTGcatcattccaccaccacccgAGAAAAGTGTCGTAGGAATGACTAAAGTAAAGGTGGGAATGGACGACCCGTCATCAGTAGAGTTTGTGGAGAGACGAAGAGCAGCTCTGGAGAGGTATCTTCAGAGAGTAGTGTCTCACCCATCGTTACTACAAGATCCTGACGTCCGTGAGTTCttggagaaagaggagctaCCCAGGGCAGTGAGTACTCAGGCACTGAGTGGAGCTGGCTTCCTCAAAATGATCAATAAAGCATCAGATGCTGTCAACAAGATGACCATCAAGATGAACGAGTCTGACACCTGGTTTGAGGACAAGTTCCAGGAGGTGGAGAACGAGGAGCAGCAGTTGAGGAAGCTTCAGGCGGTGGTCGACTCCCTGGTCAACCACAGAAAGGAGCTGTGTGGGAGCACGGCAGTATTTGCCAAAAGTATGGCCATGTTGGGAAACTCTGAGGACAACACAGCCTTGTCGCGGGCCCTCTCCCAGCTGGCAGAGGTGGAGGACAAGATGGAGCAGCTGCATCAGGAGCAGGCAGCCAGTGACTTCTTCATCTTTGCAGAGCTTCTGGCCGACTACATTCGCCTGCTGGGTGCTATGCGCGGGTGTTTTGACCAGCGTGTGCGGGCGTGGCAACGATGGCAGGAGGCTCAGAGCACACTCCAGAAGAAGAGAGAGGCCGAGGCCAAGCTGCTGTGGGCAAACAAGCCGGACAAACTCCAGCAGGCCAAAGAAGAGATCACTGAGTGGGAGGCGAGGGTTACTCAGCACGAAAGAGATTTCGACAGGATTGGTATGACTGTACGCAAGGAGGTTCTCAGGTTTGAgAAAGAAAAAGCCAAGGACTTCAGGAGCCAGATAGTCAAATATTTGGAGGCCATGCTGCAGTCTCAACAACGgCTTGTAAAGTTTTGGGAGGCGTTCCTGCCTGAGGCAAAGGCAATAGCTTAATGAAGAGGGAGACTTTTTAAAGACCCCAACTGCCTTTTTTGAACACTTTACCTCTTGACCACAAACTGAGAGGACAATTTTGCAACACACAAGAAACTtccatccattttttttctcttttgtctttttaatcATAGTGTATTCTCTTACCTTGTACAGTTATTTGATATAACAAGCTGCCGCATTTACACgaaatttttttttggcacaATTCCTTGTTTATGTTCTTGACTGAAAGATGGTATAAAGCAGGAGATTAATCTGGTCTTACTATTTGGAAAACCCACTCTCTGTCAAAGGGTGTATATtgatgtttcttgcttaaactTTAATAAAGTGTTAACACTGAGGTACTGCCCTAGAGTAACCTTGTCTATAGTTTACATTAGAAGATAAACGTATGTAAGTCATTCCAGTCTCTTAACAGCTTATGTTGATGGATGcatgtcagaaaatgttttgaTGCACTAAAACGCATTGTACAGTTGGAAAAgctgttttttaataaaatgccACTATTGCTGACTGAGCTCATTTACCAGGAGTATTAGCACATTGTTAATGTATCACACAATGCATATTAGATCATAGAAATCCTATTCAAACTCAGATTTGACAAGGTTACAGGCTTGTCAGAGTTGTTACAACATGATAGAAGAAATCTAAAGTTACAGTGGGTGCAAGTTGGGAAAATGTAATCACTGCTTTTGTTGGTATTTTCTACAATGATGTATTTGCTAGAATCATGTTTATTATATTAATCAATTTCTGCAATTTAAGTTTTAAGTACTTCTTGTATCAGAGATTGAGGCACAAACTCATCTGGAACTGCTGCAGAGACTTTTTACTGTCTATAAATGACTATTGACATGTAtgtacacatgtacagtacttTAATTGAATCATAAAATTACTGTCATATTATTAGTGACCACACATTTTTTGATAAATTAGTTTAACgatgacaaaaaaacacagacattcaAGTGATATGGTCCCTTATTTTCTTATTCAGCATTTGTAagagtgttttttctttcatgtCATCTTTACGTAAGAATGTACTTTATTTTTGTAACCACCTTGCATTGGCACACACATTTTCCTGGAAGCACTAAAAAGatgtacaaaataaatatgATTGGTTAAGCTTT

Function

symbol description
snx1 Enables phosphatidylinositol binding activity; protein dimerization activity; and signaling receptor binding activity. Involved in several processes, including early endosome to Golgi transport; lamellipodium morphogenesis; and receptor internalization. Located in early endosome membrane and lysosome. Part of retromer, tubulation complex.

NR:

description
PREDICTED: sorting nexin-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K17917 SNX1_2; sorting nexin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794905.1 True 2761 mRNA 0.45 15 15580040 15591856

Neighbor

gene id symbol gene type direction distance location
csnk1g1 csnk1g1,LOC103370372 coding downstream 1948 15536974 ~ 15578092 (-)
LOC120556400 rps17,LOC100699764,LOC107389132 coding downstream 48030 15524344 ~ 15532010 (-)
LOC120556362 slc25a44,LOC104955209 coding downstream 142552 15433422 ~ 15437488 (-)
LOC120555953 LOC104955210,LOC103368874,LOC100700844,LOC104922787,LOC101483392 coding downstream 152441 15418952 ~ 15427599 (-)
tspan4a tspan4,LOC102780031,LOC107381782 coding downstream 223981 15181720 ~ 15356059 (-)
neo1a NA coding upstream 8119 15599975 ~ 15787368 (-)
LOC120556584 NA coding upstream 47913 15639769 ~ 15639960 (-)
bbs4 bbs4,LOC102786181 coding upstream 264859 15856715 ~ 15872441 (-)
scamp2l scamp2,LOC106512987,LOC107381771 coding upstream 280855 15872711 ~ 15884598 (-)
myo9aa myo9a coding upstream 295155 15887011 ~ 16017712 (-)
G27587 NA non-coding downstream 33249 15546578 ~ 15546791 (-)
G27582 NA non-coding downstream 44703 15534000 ~ 15535337 (-)
G27552 NA non-coding downstream 74372 15479306 ~ 15505668 (-)
G27554 NA non-coding downstream 93575 15483110 ~ 15486465 (-)
G27551 rbpms2,LOC107381790,LOC104957780 non-coding downstream 97354 15475253 ~ 15482686 (-)
G27594 NA non-coding upstream 4757 15596613 ~ 15596867 (-)
LOC120555431 NA non-coding upstream 226754 15818610 ~ 15848699 (-)
G27659 NA non-coding upstream 437031 16028887 ~ 16029172 (-)
G27698 NA non-coding upstream 575103 16166959 ~ 16168421 (-)
G27725 NA non-coding upstream 795040 16386896 ~ 16387172 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 501210 15050662 ~ 15078830 (-)
G27420 NA other downstream 736135 14842713 ~ 14843905 (-)
LOC120556476 NA other downstream 1000029 14578027 ~ 14580011 (-)
G27321 NA other downstream 1109695 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 2484274 13069996 ~ 13095766 (-)
LOC120556162 znf609 other upstream 479713 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 730107 16321963 ~ 16408868 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other upstream 1601657 17193513 ~ 17284509 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 1916267 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 2007894 17599750 ~ 17601390 (-)

Expression


Co-expression Network