irx6a (irx6)


Basic Information

Item Value
gene id irx6a
gene name irx6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 35610153 ~ 35616798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794924.1
CGTGATTGGCAAAGACATTATTCTATCCTTGGTACCCTGCCGTTCCGGGATTACAGTGACGTCACGCTGATACCCTTGCATGGATGAATGCTAAAGAACTATAGAGCCACAAATAATAGCACAAGCAGAGTCCATATCTTGCAAGTCTTACGTTATCCTTTAAGCCTCCTTCAGCGAACAcaacaacaatttttttttgcacttaaTGACGCTTAATTTCATTTCTTATCGGGTCCTTTGGGGGGGATTATTCATTCATATAAAACAATCTGCAGCTGGTACCATCCTAAAGTCTCCCTCCAATGAGTGAAGTCATCTATTATTGAGCGAAAGGCCGTGCGTGGAAATGTGTGTAAGACGGTGGATTTGAAGTTGAATTGGTTGCAATCGATCAAGGGTGAAGAATATTGCTGATGGTAACAAAAGAAGCAGCTATGTCTTTCTCGCAATTTGGATACCCCTACAATGCAACTTCACAGTTTTTCGTGTCGGCAAACCCCAGTACGACTTGCTGCGATTCGATTTCCAGGTCGGTCTCTGACGGGACAGGCGGCACCCAGACCGCCGCTGCCGCCGCAGCCGCTGCTGCCTCCTTCTGCTGCCCGTCCTATGAGAACCGGCTCCTGGCGAGCAGCCGGACGGAGCTGAACGCAGCACTGGGGATGTACAGCTCTCCATACGCCGCAGCGGCTGCCGCCAGCCAAAACTACGCCAACTACTTCCCCTACAGCACCGACCCATCCGCTATCTACTCCACTCTGAATCCACAGTATGACATTAAGGACAGCACAGGCACTTTACACTCTGGCATCACTCAAACCGCTGCATACTATCCTTATGACCATTCACTTGGACAGTATCAATATGACAGATACGGGACAGTGGACTTTAATGGCACAGCCAGAAGAAAGAACGCGACTCGTGAAACCACCAGCACTCTGAAAACATGGTTGTATGAGCATCGCAAGAACCCGTACCCCACCAAGGGAGAGAAGATCATGCTGGCCATCATCACCAAAATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCCAGGAGGAGGCTAAAGAAGGAGAACAAGATGACCTGGTCACCAAAGAATAAGGCCACCGATGACAGGAAGGACGACTTCAACAAGAGCGAGCAAGACTGTGTCACCAAAGATTCTAGTGATTGCAAGGAGGAGAAGGATCTGCATCTGAGTGATCTGGATGACATGGACGACGACGACTGTGACAAGCTGGACAGTGACTGTGAAAAGGTGGCTGCCGATGAGCACGACCTCCAGAGGATCATGGCAGTATCTGGAGCCCCTCAAAAGAGAGACTGCAGCTCCGAGCTGCACCTGAGTTTAACTAACAGCTTCCACGCGTTCCCCTGCGCCATCAAAAGTGTCTCCACCATCCCTCCTCTCCCGTCTGACTTCCTGGATCCTGTGTTGTCCAAGGCACCTTCCTCGACCGGCCCCGCGGGGACAGTGTCCCTGTCTCACTTTGAAGCATCAGATAAGCCTCGGATTTGGTCTCTGGCACGTACGGCGGCTTCGGGGGTCATACTGAGCCCTCAGCAGCATGGCTCGGAGCTGAGGACAGGCAACACAACCGGGGACTGCCAGCTCCAGAGCGCCAGGCTTACCGGGGCTCTTACTGGACAGTGTGGGGCCATGAGAGGCCTCCATGAATCGAGCAGTGCCACCAATACTGAGAGCCCCTTCTCTGAGGGCTCATCCTTGCACTCAAAAGTCTATGGCAATGGCAGCTACAGTCACAAGGACATCCAACTGCACTGTTCATCCTATGCTGCACTCCCAGACACATGTCAGTACTCCACTATTGAAGGATTCTCTGGTGGCAAAGCAGAGACACAGTCATCTGACCTGAGCGAAGCCTGCGGGACCGTGCAGGATGACAAGGTCACTGCGTTCAGACCGGTGATGAAGAGGTGAAGCAGATTGGTGTAACCTGTACCACAATAAATAATGGGACATTTCTTATGCACTAAAGGACACACTGGCCGAGTCCTCAATATGACACTTGGGAGCTACCTGGCGCTGCTGCAGTGAGAAGCTGTCAAACTGTGGACGTGTCTATCATTTTGCACAACTTTGTTTTTATGGTGTAAAAGACTATATGCAAAAAAAATTCTAGATGCGAAAGTATGAGAATGGCCAAATGAAAACGGCCGGTTTTGTGTATGGCAATCGTGTAGTGTAGCAAACCTATTTATTTctctatgtatttattattttgttatccTGTTTGTTTCTTATCGGATGTGTTTATTGGTTGAATTCGTATCTCCTCTGAGTATTTTGTTACATGTTGCGTTTTACTGTGGCTTCGTGTCATTTTGCctgatgtaaaagaaaaaaaaagaagcttgtCGGACATAAAGTTGACCCTAAAAGGACCGGATCCCCCTGTGTTGCGCGTGGACCTGGAGgatttttgtctttgtgtttaAAATGTGAGCTTGTTCTGTGTTTGCCTATCacggctttctttttttttttctaagaatacattttttttttttctttctaagaGCTTTCCTTGTCTGTGTCATGGTTATTCATTTTAGATTTTAGAGCTCAACGTCCTGTCGGCCAATTAAAACATTTGCGGATGTGCATTTGATCAAAGTTTATCATCTTGACTCGACAGCGTAAAGCCGCAGCGCTGATGGAAGGTCATAATTCAGAGGAGGACGTGAGTGAAATCCACAAGTTGCGGAAGAAAGGGGACATCATCCCTCTATTGTCAGCATCTAATCAGAAGTGGCATCGAACACTTTGTTACTGTTCAGGCCGAGCGACGAGGCAGGGACATAGGATGAATGCTGCTTTGTCCCCTGTGTAGCGAGCCGCTGCACTAACTTAACATTGTGTTAATTAAAAGGTCATTTGTAGGATCAAACCCAGGCAGAGGAATTCACATGGTCCATCAAAGTCCGTTTGATTTGGCTGTTTTGCCTATACAGTCCATCTCGTTATCGGATAACTTTTGAGACTCTCCTACACACAGCTCTGTAATAAGATGATCACTGTAGTGTGTGATGCGCGCTGACGGCTATGAACAACTTTTTCATCCTCACATTTCAAACTTTGAAAATCAAACAGTTTTGTAGCAAACGACAAACGAGTGCTGTGTAAACCAAATGCGGCTGGGATGTGGATTTTGACGCACCATCCTACTGCAcaatctacaaaaaaaaaaaaagactagtgACAAGACTAGGCTATGTGAAACGTGTTTTActttaattatgtaaaatagGTCacttgtgactttttttttaaacaacttgTCTGCCTAAAGATAAAAGGAAAAAGCTGTT
>XM_039794925.1
GATTGGCAAAGACATTATTCTATCCTTGGTACCCTGCCGTTCCGGGATTACAGTGACGTCACGCTGATACCCTTGCATGGATGAATGCTAAAGAACTATAGAGCCACAAATAATAGCACAAGCAGAGTCCATATCTTGCAAGTCTTACGTTATCCTTTAAGCCTCCTTCAGCGAACAcaacaacaatttttttttgcacttaaTGACGCTTAATTTCATTTCTTATCGGGTCCTTTGGGGGGGATTATTCATTCATATAAAACAATCTGCAGCTGGTACCATCCTAAAGTCTCCCTCCAATGAGTGAAGTCATCTATTATTGAGCGAAAGGCCGTGCGTGGAAATGTGTGTAAGACGGTGGATTTGAAGTTGAATTGGTTGCAATCGATCAAGGGTGAAGAATATTGCTGATGGTAACAAAAGAAGCAGCTATGTCTTTCTCGCAATTTGGATACCCCTACAATGCAACTTCACAGGTCGGTCTCTGACGGGACAGGCGGCACCCAGACCGCCGCTGCCGCCGCAGCCGCTGCTGCCTCCTTCTGCTGCCCGTCCTATGAGAACCGGCTCCTGGCGAGCAGCCGGACGGAGCTGAACGCAGCACTGGGGATGTACAGCTCTCCATACGCCGCAGCGGCTGCCGCCAGCCAAAACTACGCCAACTACTTCCCCTACAGCACCGACCCATCCGCTATCTACTCCACTCTGAATCCACAGTATGACATTAAGGACAGCACAGGCACTTTACACTCTGGCATCACTCAAACCGCTGCATACTATCCTTATGACCATTCACTTGGACAGTATCAATATGACAGATACGGGACAGTGGACTTTAATGGCACAGCCAGAAGAAAGAACGCGACTCGTGAAACCACCAGCACTCTGAAAACATGGTTGTATGAGCATCGCAAGAACCCGTACCCCACCAAGGGAGAGAAGATCATGCTGGCCATCATCACCAAAATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCCAGGAGGAGGCTAAAGAAGGAGAACAAGATGACCTGGTCACCAAAGAATAAGGCCACCGATGACAGGAAGGACGACTTCAACAAGAGCGAGCAAGACTGTGTCACCAAAGATTCTAGTGATTGCAAGGAGGAGAAGGATCTGCATCTGAGTGATCTGGATGACATGGACGACGACGACTGTGACAAGCTGGACAGTGACTGTGAAAAGGTGGCTGCCGATGAGCACGACCTCCAGAGGATCATGGCAGTATCTGGAGCCCCTCAAAAGAGAGACTGCAGCTCCGAGCTGCACCTGAGTTTAACTAACAGCTTCCACGCGTTCCCCTGCGCCATCAAAAGTGTCTCCACCATCCCTCCTCTCCCGTCTGACTTCCTGGATCCTGTGTTGTCCAAGGCACCTTCCTCGACCGGCCCCGCGGGGACAGTGTCCCTGTCTCACTTTGAAGCATCAGATAAGCCTCGGATTTGGTCTCTGGCACGTACGGCGGCTTCGGGGGTCATACTGAGCCCTCAGCAGCATGGCTCGGAGCTGAGGACAGGCAACACAACCGGGGACTGCCAGCTCCAGAGCGCCAGGCTTACCGGGGCTCTTACTGGACAGTGTGGGGCCATGAGAGGCCTCCATGAATCGAGCAGTGCCACCAATACTGAGAGCCCCTTCTCTGAGGGCTCATCCTTGCACTCAAAAGTCTATGGCAATGGCAGCTACAGTCACAAGGACATCCAACTGCACTGTTCATCCTATGCTGCACTCCCAGACACATGTCAGTACTCCACTATTGAAGGATTCTCTGGTGGCAAAGCAGAGACACAGTCATCTGACCTGAGCGAAGCCTGCGGGACCGTGCAGGATGACAAGGTCACTGCGTTCAGACCGGTGATGAAGAGGTGAAGCAGATTGGTGTAACCTGTACCACAATAAATAATGGGACATTTCTTATGCACTAAAGGACACACTGGCCGAGTCCTCAATATGACACTTGGGAGCTACCTGGCGCTGCTGCAGTGAGAAGCTGTCAAACTGTGGACGTGTCTATCATTTTGCACAACTTTGTTTTTATGGTGTAAAAGACTATATGCAAAAAAAATTCTAGATGCGAAAGTATGAGAATGGCCAAATGAAAACGGCCGGTTTTGTGTATGGCAATCGTGTAGTGTAGCAAACCTATTTATTTctctatgtatttattattttgttatccTGTTTGTTTCTTATCGGATGTGTTTATTGGTTGAATTCGTATCTCCTCTGAGTATTTTGTTACATGTTGCGTTTTACTGTGGCTTCGTGTCATTTTGCctgatgtaaaagaaaaaaaaagaagcttgtCGGACATAAAGTTGACCCTAAAAGGACCGGATCCCCCTGTGTTGCGCGTGGACCTGGAGgatttttgtctttgtgtttaAAATGTGAGCTTGTTCTGTGTTTGCCTATCacggctttctttttttttttctaagaatacattttttttttttctttctaagaGCTTTCCTTGTCTGTGTCATGGTTATTCATTTTAGATTTTAGAGCTCAACGTCCTGTCGGCCAATTAAAACATTTGCGGATGTGCATTTGATCAAAGTTTATCATCTTGACTCGACAGCGTAAAGCCGCAGCGCTGATGGAAGGTCATAATTCAGAGGAGGACGTGAGTGAAATCCACAAGTTGCGGAAGAAAGGGGACATCATCCCTCTATTGTCAGCATCTAATCAGAAGTGGCATCGAACACTTTGTTACTGTTCAGGCCGAGCGACGAGGCAGGGACATAGGATGAATGCTGCTTTGTCCCCTGTGTAGCGAGCCGCTGCACTAACTTAACATTGTGTTAATTAAAAGGTCATTTGTAGGATCAAACCCAGGCAGAGGAATTCACATGGTCCATCAAAGTCCGTTTGATTTGGCTGTTTTGCCTATACAGTCCATCTCGTTATCGGATAACTTTTGAGACTCTCCTACACACAGCTCTGTAATAAGATGATCACTGTAGTGTGTGATGCGCGCTGACGGCTATGAACAACTTTTTCATCCTCACATTTCAAACTTTGAAAATCAAACAGTTTTGTAGCAAACGACAAACGAGTGCTGTGTAAACCAAATGCGGCTGGGATGTGGATTTTGACGCACCATCCTACTGCAcaatctacaaaaaaaaaaaaagactagtgACAAGACTAGGCTATGTGAAACGTGTTTTActttaattatgtaaaatagGTCacttgtgactttttttttaaacaacttgTCTGCCTAAAGATAAAAGGAAAAAGCTGTT
>XM_039794926.1
TTGGCAAAGACATTATTCTATCCTTGGTACCCTGCCGTTCCGGGATTACAGTGACGTCACGCTGATACCCTTGCATGGATGAATGCTAAAGAACTATAGAGCCACAAATAATAGCACAAGCAGAGTCCATATCTTGCAAGTCTTACGTTATCCTTTAAGCCTCCTTCAGCGAACAcaacaacaatttttttttgcacttaaTGACGCTTAATTTCATTTCTTATCGGGTCCTTTGGGGGGGATTATTCATTCATATAAAACAATCTGCAGCTGGTACCATCCTAAAGTCTCCCTCCAATGAGTGAAGTCATCTATTATTGAGCGAAAGGCCGTGCGTGGAAATGTGTGTAAGACGGTGGATTTGAAGTTGAATTGGTTGCAATCGATCAAGGGTGAAGAATATTGCTGATGGTAACAAAAGAAGCAGCTATGTCTTTCTCGCAATTTGGATACCCCTACAATGCAACTTCACAGAATCCACAGTATGACATTAAGGACAGCACAGGCACTTTACACTCTGGCATCACTCAAACCGCTGCATACTATCCTTATGACCATTCACTTGGACAGTATCAATATGACAGATACGGGACAGTGGACTTTAATGGCACAGCCAGAAGAAAGAACGCGACTCGTGAAACCACCAGCACTCTGAAAACATGGTTGTATGAGCATCGCAAGAACCCGTACCCCACCAAGGGAGAGAAGATCATGCTGGCCATCATCACCAAAATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCCAGGAGGAGGCTAAAGAAGGAGAACAAGATGACCTGGTCACCAAAGAATAAGGCCACCGATGACAGGAAGGACGACTTCAACAAGAGCGAGCAAGACTGTGTCACCAAAGATTCTAGTGATTGCAAGGAGGAGAAGGATCTGCATCTGAGTGATCTGGATGACATGGACGACGACGACTGTGACAAGCTGGACAGTGACTGTGAAAAGGTGGCTGCCGATGAGCACGACCTCCAGAGGATCATGGCAGTATCTGGAGCCCCTCAAAAGAGAGACTGCAGCTCCGAGCTGCACCTGAGTTTAACTAACAGCTTCCACGCGTTCCCCTGCGCCATCAAAAGTGTCTCCACCATCCCTCCTCTCCCGTCTGACTTCCTGGATCCTGTGTTGTCCAAGGCACCTTCCTCGACCGGCCCCGCGGGGACAGTGTCCCTGTCTCACTTTGAAGCATCAGATAAGCCTCGGATTTGGTCTCTGGCACGTACGGCGGCTTCGGGGGTCATACTGAGCCCTCAGCAGCATGGCTCGGAGCTGAGGACAGGCAACACAACCGGGGACTGCCAGCTCCAGAGCGCCAGGCTTACCGGGGCTCTTACTGGACAGTGTGGGGCCATGAGAGGCCTCCATGAATCGAGCAGTGCCACCAATACTGAGAGCCCCTTCTCTGAGGGCTCATCCTTGCACTCAAAAGTCTATGGCAATGGCAGCTACAGTCACAAGGACATCCAACTGCACTGTTCATCCTATGCTGCACTCCCAGACACATGTCAGTACTCCACTATTGAAGGATTCTCTGGTGGCAAAGCAGAGACACAGTCATCTGACCTGAGCGAAGCCTGCGGGACCGTGCAGGATGACAAGGTCACTGCGTTCAGACCGGTGATGAAGAGGTGAAGCAGATTGGTGTAACCTGTACCACAATAAATAATGGGACATTTCTTATGCACTAAAGGACACACTGGCCGAGTCCTCAATATGACACTTGGGAGCTACCTGGCGCTGCTGCAGTGAGAAGCTGTCAAACTGTGGACGTGTCTATCATTTTGCACAACTTTGTTTTTATGGTGTAAAAGACTATATGCAAAAAAAATTCTAGATGCGAAAGTATGAGAATGGCCAAATGAAAACGGCCGGTTTTGTGTATGGCAATCGTGTAGTGTAGCAAACCTATTTATTTctctatgtatttattattttgttatccTGTTTGTTTCTTATCGGATGTGTTTATTGGTTGAATTCGTATCTCCTCTGAGTATTTTGTTACATGTTGCGTTTTACTGTGGCTTCGTGTCATTTTGCctgatgtaaaagaaaaaaaaagaagcttgtCGGACATAAAGTTGACCCTAAAAGGACCGGATCCCCCTGTGTTGCGCGTGGACCTGGAGgatttttgtctttgtgtttaAAATGTGAGCTTGTTCTGTGTTTGCCTATCacggctttctttttttttttctaagaatacattttttttttttctttctaagaGCTTTCCTTGTCTGTGTCATGGTTATTCATTTTAGATTTTAGAGCTCAACGTCCTGTCGGCCAATTAAAACATTTGCGGATGTGCATTTGATCAAAGTTTATCATCTTGACTCGACAGCGTAAAGCCGCAGCGCTGATGGAAGGTCATAATTCAGAGGAGGACGTGAGTGAAATCCACAAGTTGCGGAAGAAAGGGGACATCATCCCTCTATTGTCAGCATCTAATCAGAAGTGGCATCGAACACTTTGTTACTGTTCAGGCCGAGCGACGAGGCAGGGACATAGGATGAATGCTGCTTTGTCCCCTGTGTAGCGAGCCGCTGCACTAACTTAACATTGTGTTAATTAAAAGGTCATTTGTAGGATCAAACCCAGGCAGAGGAATTCACATGGTCCATCAAAGTCCGTTTGATTTGGCTGTTTTGCCTATACAGTCCATCTCGTTATCGGATAACTTTTGAGACTCTCCTACACACAGCTCTGTAATAAGATGATCACTGTAGTGTGTGATGCGCGCTGACGGCTATGAACAACTTTTTCATCCTCACATTTCAAACTTTGAAAATCAAACAGTTTTGTAGCAAACGACAAACGAGTGCTGTGTAAACCAAATGCGGCTGGGATGTGGATTTTGACGCACCATCCTACTGCAcaatctacaaaaaaaaaaaaagactagtgACAAGACTAGGCTATGTGAAACGTGTTTTActttaattatgtaaaatagGTCacttgtgactttttttttaaacaacttgTCTGCCTAAAGATAAAAGGAAAAAGCTGTT

Function

symbol description
irx6 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription repressor activity, RNA polymerase II-specific; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell development; neuron differentiation; and regulation of transcription, DNA-templated. Predicted to act upstream of or within detection of visible light; negative regulation of transcription, DNA-templated; and retina morphogenesis in camera-type eye. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: iroquois-class homeodomain protein IRX-6

GO: NA

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794924.1 True 3340 mRNA 0.47 7 35610153 35616798
XM_039794925.1 False 3287 mRNA 0.47 7 35610153 35616795
XM_039794926.1 False 3053 mRNA 0.45 6 35610153 35616793

Neighbor

gene id symbol gene type direction distance location
mmp2 mmp2 coding downstream 48059 35545544 ~ 35562094 (-)
lpcat2 lpcat2 coding downstream 65468 35531948 ~ 35544685 (-)
slc6a2 slc6a2 coding downstream 86670 35489080 ~ 35523483 (-)
slc12a4 slc12a4 coding downstream 141344 35442829 ~ 35468809 (-)
pkma pkm,LOC101466927,LOC102785629,LOC105930156,LOC107381266 coding downstream 450620 35139463 ~ 35159533 (-)
irx5a irx5 coding upstream 154511 35771309 ~ 35775069 (-)
fto fto,LOC102782469 coding upstream 409365 36026163 ~ 36146418 (-)
nkd1 nkd1 coding upstream 1291102 36907900 ~ 36944842 (-)
adcy7 NA coding upstream 1394927 37011725 ~ 37083452 (-)
tent4b papd5 coding upstream 1466772 37083570 ~ 37116746 (-)
G32072 NA non-coding downstream 426380 35101940 ~ 35183773 (-)
G32077 LOC102786496,LOC102306459 non-coding downstream 474443 35134739 ~ 35135710 (-)
G32070 NA non-coding downstream 539262 35070367 ~ 35070891 (-)
G32060 LOC103373785,LOC104925039 non-coding downstream 606702 34993457 ~ 35003451 (-)
G31994 NA non-coding downstream 742635 34864877 ~ 34867518 (-)
G32153 NA non-coding upstream 9733 35626531 ~ 35700759 (-)
G32187 NA non-coding upstream 149930 35766728 ~ 35766929 (-)
G32236 NA non-coding upstream 413057 36029855 ~ 36030115 (-)
G32242 aktip non-coding upstream 598212 36215010 ~ 36216531 (-)
G32246 NA non-coding upstream 603653 36220451 ~ 36222194 (-)
G31955 NA other downstream 1010612 34490660 ~ 34599541 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other downstream 1793765 33806918 ~ 33816388 (-)
serf2 NA other downstream 2040774 33566371 ~ 33569379 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other downstream 2138818 33436811 ~ 33471335 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other downstream 2256705 33342247 ~ 33353448 (-)
cylda cyld other upstream 1242749 36859547 ~ 36882795 (-)
nod2 nod2 other upstream 1266853 36883651 ~ 36891304 (-)
ss18l2 ss18l2 other upstream 1614343 37231141 ~ 37253426 (-)
LOC120556344 lrrc49,LOC102795887 other upstream 2171927 37788725 ~ 37827271 (-)
slc6a5 slc6a5 other upstream 3588477 39205275 ~ 39235746 (-)

Expression


Co-expression Network