LOC120555826


Basic Information

Item Value
gene id LOC120555826
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11129921 ~ 11131472 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794955.1
tataacacttgcctgatagATACTCCTCACGGCTGCTATAGCGCGAGATCCCGCGACATCACAACATATATTGCCAGAAGAGACTACCAAGCAGGAAGCGAGAGAACAGCAGAATAGATCAAGAAAATGGCAGAGTCAGAGGTGAGCATCGAACGCGACAATGAGTGGCTCAATTTCGAAGGTCGACCGTACCTATTTGAGCCTGAATACACAGACGAGGAGCTACAAATAATGGAGGAGAATCGGAGAGCTGCAGAAGAGGCTGCGGAGATCACGGAGATCccagacacaccaaacagatgTGCAGGCGACTGGTGGTGTAGCTGTGGACAATGTCAGCCCATGGCTACAGAGGAAGAGTGTTTGTGTTGTCGGGAGTCGGACGTGTTTCGCCAATGCCTCGAAAACTCAGAGGCATGCTGTGTCACAGCAATGGATGACTTTCCGGCACTAATAAACCCAGCTGTTGTACGGACATTTTTTAACGTACCCAAAATCAACTGGAAGAGAAGACCTGTTCCAGAGGGACCCGACGGACAATTATCTGCAAAACAGTGTAGATTGGTGGCATATCGGATCGTCTTGGAGTGGGGATTACAAGGTGAGCGTCTGGGGCGCAAGGAGAGGAGAGTCATGCCTAGTTGTGTGGTGACCACAATTAGGACCAAGTACCCGTCCCCCACCGGCGATTACAGAGGTTTTCAGGAAGCAGAGGAATTATTGAGAATTATCTGATTTTGCAAATAATGttatgtaaataatgtaaattttTACCCTAGAAGGATGTCAATGTCAATTTGgtatacattttataaataaaaagtagTTGGTAAGATGTATAAAGACTTGTTTATTGACAGAATTATATACAGAACTACAAAAAACATGGGaataataaatcaaaacatTGGATTGAGTACACAACAAATAACAAAATTTCACTGTGACTTGAACCGAGATGTGGATTGTTTCAACAGCTCTGACTTGTCAGGCCTAGGCACAGGGGCAATGTTCTTTAGAAGCCTTTTCCGGCGAGGCGGAGGACGGGGCCAATCTTCAAGATTAATCTCATCCCTCATCTTCAGAGTGTGGTCCATGAGGGCTTGGTGGAATAGTTGCGCACCTCTCTCATACACGGGCCTAGCAATCCACTGATGACTGGCCTTTGAGTAGGCAAATGCAAATTGGGGTTGTcctataaaacaaaatgtaataacaaattAGGTAATAACAGTGTAGGTGTACATTGTAGGGTATTTGCACAAAGCACAACAGATTTATCTATTTTTGTTCTGTAGCTGACATTCCAAAATTTACTCAATTTCACTTTCAGGTCTTATTCAGATCATTTTAGGATAGCAGTGATTTTAGTAGAAGATGTAGGCATTTACCTTCTTTTGTTTTGGCCTGCTCCTTGCCAACATTGGCGTTGTGGTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794955.1 True 1440 mRNA 0.44 2 11129921 11131472

Neighbor

gene id symbol gene type direction distance location
shcbp1 shcbp1,LOC104947898,LOC104967817 coding upstream 289772 10789845 ~ 10840149 (+)
LOC120555949 NA coding upstream 384595 10741710 ~ 10745326 (+)
LOC120555948 LOC103462314 coding upstream 520840 10527838 ~ 10609081 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding upstream 644610 10484463 ~ 10485311 (+)
LOC120555943 LOC103372586 coding upstream 664367 10425163 ~ 10465554 (+)
LOC120556595 NA coding downstream 900149 12031621 ~ 12031728 (+)
LOC120555527 NA coding downstream 1424575 12556047 ~ 12562553 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding downstream 1934480 13065952 ~ 13071332 (+)
LOC120556474 NA coding downstream 1958063 13089535 ~ 13091435 (+)
si:cabz01068815.1 NA coding downstream 2013035 13144507 ~ 13176403 (+)
G26639 NA non-coding upstream 213779 10915712 ~ 10916142 (+)
G26636 NA non-coding upstream 229063 10900628 ~ 10900858 (+)
G26634 NA non-coding upstream 250617 10878942 ~ 10879304 (+)
G26605 NA non-coding upstream 357922 10770959 ~ 10771999 (+)
LOC120556100 NA non-coding upstream 469346 10659569 ~ 10660575 (+)
G26711 NA non-coding downstream 45402 11176874 ~ 11177288 (+)
G26712 NA non-coding downstream 46201 11177673 ~ 11179253 (+)
G26713 NA non-coding downstream 48139 11179611 ~ 11180118 (+)
G26714 NA non-coding downstream 55639 11187111 ~ 11187584 (+)
G26722 NA non-coding downstream 77249 11208721 ~ 11209301 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 1269921 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 1452894 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 1525459 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 1751310 9333229 ~ 9378611 (+)
G26236 NA other upstream 1974578 9068729 ~ 9155343 (+)
lto1 oraov1 other downstream 771800 11903272 ~ 11912722 (+)
G27086 NA other downstream 1978285 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 2103763 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 2540005 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 2678463 13809935 ~ 13856423 (+)

Expression


Co-expression Network