LOC120555843 (LOC104937892)


Basic Information

Item Value
gene id LOC120555843
gene name LOC104937892
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7304084 ~ 7306330 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794980.1
GGCATGCTTTTTATCTATTgacttttttactcttttggACTGCCGGCGCCACTAGCATTTGCCTATATTGCCTATGCCCCGGGCTGGCCCCGTAGATTAGGAAGGATCCGGTGGTTTAAGATGTCAGCGAGTGCAACAGGGTAGGagttgaggaggaggagagagccccccgcccccccccaggCCGCCTGCAGCCACAGGCCACCATGACGGAGTGGACCTTGCTCAAACGCCTCCTGGACGCCGTGCACCAGCACTCCACCATGATCGGCCGCCTGTGGCTCACCGTCATGGTCATCTTCCGGCTGCTCATCGTCGCCGTGGCGACCGAGGACGTGTACGCCGACGAGCAGGAGATGTTTGTCTGCAACACGCTGCAGCCGGGCTGCTCCACCGTGTGCTACGACGCCTTCGCGCCCATCTCGCAGCCGCGCTTCTGGGTCTTTCACATCATCAGCGTGTCCACGCCGTCGCTCTGCTTCATCATTTACACCTGGCACAACCTGTCCAAGCTGCCGCACAGCTCCACCCAGAGGCAGGGCCAGGGCCCCGTGGCTGGCCCGGGCCAGGGAGGCCCCGCTGGACAGCAAGGCGACGGACGGGAGGTGTACGATCGGAGCTGCGACTCCGACAGCTGCTCCATCCGCTCCCATAAGCATCTAGGTCACAGCCTGGCAGACGTGCTGCAGGGCATCACCGCCCAGAGTCTCCAGACAGGAGACCCAAACAACATGGCGCCCGTGAGCCACGCCCGAGCCAGCTACTTCAGGGAGCGGGGTGCACAGGGTCCCGAGGCCTCCGGCGGGGTTCTGTCCAAATGCTATGTCTTCCACGTGTGCCTGCGGGCCGTCCTGGAGCTGGGCTTCGTCCTGGCCCAGTGGAAGCTGTTTGGCTTCCGGGTGCCCGTGCACTTCCTGTGCACATCGGCGCCCTGCAGCCAGCCGGTGGACTGCTATGTCTCCCGGCCCACGGAGAAAACCATCTTCCTGCTCTTCATGTTCTGCGTGGGCGTTTTCTGCATCCTGCTCAATCTGCTGGAGCTCAACCACCTGGGCTGGAAGAAGATCCGGCAGGTGGTGCGGCTGAGGGAGCGGGGGGCGTCCTGGGGAGGGTGTCCCGGTATGAGGGGGGGGTATGAAACCTTCCCTGCGGACAGCCCCTCTCCCACATCCTCCCTAGGCTTTAGGGGCGTGACCAGCACCACCTCCCTGCCCACCCTGGACCTGGTGGTGGGCCACCGGGCCGACTGGAGCTGCGCTGCACCCGGGGACACGGGCCCGGGGAAACCCAAGAGTCAGGACTCCCAGACAGGAGAGAGGCAGCCTCTGAAAAGTCAGAGAGCCGTCAGAGAGTCCAAACAGAGGAGCACCGAGGTCTGGATATAGTCTTCGACTACGGGGACGCACGCCGCTGCCTTTCTTTGTGGAGGTGGAAATACA

Function

NR:

description
PREDICTED: gap junction delta-2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794980.1 True 1439 mRNA 0.63 2 7304084 7306330

Neighbor

gene id symbol gene type direction distance location
LOC120555919 NA coding downstream 251607 7045853 ~ 7052477 (-)
hdgfl3 LOC103366351,LOC102309090,LOC101465811,LOC100694012,LOC106907470 coding downstream 261943 7028566 ~ 7042141 (-)
LOC120556367 LOC104932139,LOC100695351,LOC108237907,LOC102197162,LOC103129685,LOC106520888,LOC101465514,LOC103366349,LOC102224277 coding downstream 280912 7005842 ~ 7023172 (-)
LOC120556364 NA coding downstream 321723 6970278 ~ 6982361 (-)
ccdc102a ccdc102a coding downstream 402735 6847479 ~ 6901349 (-)
arnt2 arnt2 coding upstream 1846912 9153242 ~ 9229577 (-)
fah fah coding upstream 2002267 9308597 ~ 9325288 (-)
chsy1 chsy1 coding upstream 2821648 10127978 ~ 10231722 (-)
selenos NA coding upstream 2927134 10233464 ~ 10241227 (-)
zgc:113274 NA coding upstream 2937794 10244124 ~ 10245386 (-)
G25934 NA non-coding downstream 9930 7225284 ~ 7294154 (-)
G25933 NA non-coding downstream 19302 7281854 ~ 7284782 (-)
G25924 NA non-coding downstream 167858 7135909 ~ 7136226 (-)
G25922 NA non-coding downstream 225651 7078207 ~ 7078433 (-)
G25920 NA non-coding downstream 249484 7054396 ~ 7054600 (-)
G25955 NA non-coding upstream 22377 7328707 ~ 7329657 (-)
G26005 NA non-coding upstream 432709 7739039 ~ 7739388 (-)
G26008 NA non-coding upstream 466036 7772366 ~ 7772846 (-)
LOC120555853 NA non-coding upstream 485480 7791810 ~ 7793958 (-)
LOC120555851 NA non-coding upstream 488452 7794782 ~ 7831623 (-)
dok4 dok4,LOC102198948,LOC100694825,LOC102775855 other downstream 610753 6642164 ~ 6693331 (-)
tpcn2 tpcn2 other downstream 713445 6534042 ~ 6590639 (-)
pop4 pop4,LOC105418436,LOC104960843 other downstream 779729 6509259 ~ 6524355 (-)
ankdd1a ankdd1a other downstream 957523 6323277 ~ 6346561 (-)
LOC120555534 LOC103369663 other downstream 1136555 6156222 ~ 6167529 (-)
lmnl3 LOC104943683 other upstream 24378 7330708 ~ 7344756 (-)
G26071 mex3b other upstream 837877 8144207 ~ 8146901 (-)
LOC120555934 NA other upstream 1188023 8494353 ~ 8496635 (-)
il16 LOC102796330 other upstream 1324278 8630608 ~ 8697622 (-)
tlnrd1 mesdc1 other upstream 1427089 8733419 ~ 8758808 (-)

Expression


Co-expression Network