LOC120555848 (LOC107591295,LOC105891088)


Basic Information

Item Value
gene id LOC120555848
gene name LOC107591295,LOC105891088
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7317909 ~ 7330702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039794992.1
CGTCAGCCACGCTAATCTGCTTTAAGGGGAGAAGCTTGCACACACAGACTCTGATAAACAGAGGGGAAACGGGCTGCTGTCCACTGTACGGGAGCACACAGCATCACACGGTGTTTGTGGATACCAAGCTAGTGATGTGAGGCTCCTGGCATGAGTGAATGGCCCCTTACATAGCAGACATGACATCAGAGGAACCCCTGGGCCCGTGGGTGCCCAGCCCTGTCGGGGAGGTCAAGGTACTGCCTGAAGACGGGCTGGAGGAGCAACtcaacagctgcaaccaagaagTAATGCACTATCACACATGTGACATGGCCACTGAGGAATGTGCAGCAATCCCTGACAGTCTGTGCAGCGACGAGCCGTTTTGTAGGATCTGCCATGAAGGCAGGGCCTCAGGGGAGCTGCTGTCCCCCTGCGAGTGCTGCGGTAGCCTGGCCATGGTGCACCGCACATGCCTGGAGCACTGGCTCACCGCCTCCAACAGCAGCCACTGTGAACTCTGCCACCACCAGTTTGCACTGGAGCGCCTGCCAAAACCTCTTACTGAGTGGCTGTGCGCTCCCTCCGTGCAGCAGCAGCGGAGGACGCTGTGTGGCGATGCGGTGTGCTTCCTGTTCATCACGCCGCTGGCCAGCCTGTCAGGATGGCTGTGTGTCCAGGGAGCCATGGACCTGTACTACACCAACGCCATGGAGGCCCTTGGGCTGCTGGTCCTCACGCTGGCCCTCTTCACCATATACGTCTTCTGGACCATGGTCTCTGTGCGCTACCACATGCATCTGTTCCAGACATGGAAGAAGACGGACCAGAGAGTGCGACTGCAGATTCCCTTGCCCCCCCATACCACAACGACCCAACAGACCCTGTCCATAAACCTCCTCAGCAAAGCCCCCAACAAAGAGACTATGGTGTAGTAGACTGCAGTCTACATTACTGAACATACCTCAGATAGAAGGGAAGAGGGGACCCAAACTCAGGACATGCCCCAATCCCGACATAACAGCAGAGTTAAAGCCAGGGTTGGAAGACTCCTTCAAGAGCTGCTGGAACCTTTTCGGGAACAATTGAGTTAAAGGAGCAAAGACTAACCGAGACTCCTCGCAACCTTTGACTTGTCTTACAGCGATAAAATGTGACATTGTCCCAAAATAAGAAGAGTCATTCTGGCAACTGTGGACATGTTCGGTATCTTCTAGAGTCTACAGTGACAATCAGTATCATTGTTTCCTGAAGACAACGAAGCATCCTGGACTTATCTGACAATCCAGTTGTTTTTCCTCCTCGTGGAATAAGCTCATGAAGACAAATCTGTTGCAACTTGGCACTTCTAATATCTACAACGCGAGTGTGTTTAACTTATAATTAGAAGAACTAAAGTCCAGCTTTGTAGCTCTTCAGCTGTTCAGATTTGAATCATACTATTACAAACTTTTAAGTTAGGCTTTGCTCATTATTCATGACATAGCTGATCGTAGCGTTTCTAcggcgttccatttacctcagaAGTCGgaaatgacgtcacacccgagcTGACCGCAGTTACAACTAGAGATGGTCCCATAATATTTTTTGAGTATCGGCCGATACTTAATACCGATCAGATACcagtatggatgtgatatgatttctataaTTTTTTGTACAGTCTGGCTCGGGTTAaagcttttgtgaaacaggaacacaaacaaacaacgaATGCCGTAGAATTTTATTTTACTCTCCAGTTTGTCATAGCGGACAAAGAACAAAAATTACTTCCAAGTAGATTTTCTTGAGGTCTAAATTACGTGGTATCAGATCGATGCATAGAGATCCAGAGTTCCAATactgataccagcattttaggcagtatcggaggcttttcccaatactggtatcggtacCTCTCTAGTTAAAAGTCGGAAAAAACGGGGGTAAGGGGTACTCCCGCCCGGCTAGCCATTGtcagcaataccagttgatagcAACGCACTACGTTGTACTTTGTGCAGTCAAACACCATAGCAACATGCCCACAAATAGAAGCTGGACAGAACTGTGTGTACGATTGATTTAATGAGACAGAAGTGCTCAAAAACTGTATACAACCACAGCTTTTACTACTGTTAAAGCtcagagcagccatgttggatggTGGTGGCTGTGTTGGTGAGGTTCTCCCtactttccccccccccagagTCGAGAGCGATGCAATGACGTCTTTGCAGAAACAGTGTCCCTTATATCCACCGATCTCATTGTGACGTTTCATTGGAACTACTTTCTGAAGTAGTCCCTATGAAAATTAGTAATCATTTCATTGATAGGAAGGTTTCCGGCCATCAGTTTCTTATTTTTTGGCACTCTAAAATAATAGTTGTGGGCTGCTCAGAGATCTTTGTTAGTATTCCAACTTTACCACAGCAGCCAGACGCAAAATCATTTTGCAATATTTAAGCCATTTCCTGCATTAACACTTATGCATATGCGCAAAATTTATGCACATCAAAAAGTGGAAGAATCAAACCTGTTGCGTTTTGTGGACTACCCTGAGAAACCAGGATACAGTTTCTAAAAATCTGCATGGTAAATACCAGAGGAAAGTGAGAAAGGGTGTTTGAAAATGTGCAAATGACATTTGTTGGGTATTTGGGTGAACCAACCCTTTAACCTGTGCTGCTTCCTCCGGCTATTCATTTTAGTTCTTAACAGTAAGTTAAGTGTTGTGTGAGCCTTCCAGCACAGCTTCTCCTGCAAAATTTAACTAGAATGCTTTTGTTGTAATAAACAGTCTTAATACAA
>XM_039794993.1
TCCGTCAGCCACGCTAATCTGCTTTAAGGGGAGAAGCTTGCACACACAGACTCTGATAAACAGAGGGGAAACGGGCTGCTGTCCACTGTACGGGAGCACACAGCATCACACGGTGTTTGTGGATACCAAGCTAGTGATGTGAGGCTCCTGGCATGAGTGAATGGCCCCTTACATAGCAGACATGACATCAGAGGAACCCCTGGGCCCGTGGGTGCCCAGCCCTGTCGGGGAGGTCAAGGTACTGCCTGAAGACGGGCTGGAGGAGCAACtcaacagctgcaaccaagaagTAATGCACTATCACACATGTGACATGGCCACTGAGGAATGTGCAGCAATCCCTGACAGTCTGTGCAGCGACGAGCCGTTTTGTAGGATCTGCCATGAAGGCAGGGCCTCAGGGGAGCTGCTGTCCCCCTGCGAGTGCTGCGGTAGCCTGGCCATGGTGCACCGCACATGCCTGGAGCACTGGCTCACCGCCTCCAACAGCAGCCACTGTGAACTCTGCCACCACCAGTTTGCACTGGAGCGCCTGCCAAAACCTCTTACTGAGTGGCTGTGCGCTCCCTCCGTGCAGCAGCAGCGGAGGACGCTGTGTGGCGATGCGGTGTGCTTCCTGTTCATCACGCCGCTGGCCAGCCTGTCAGGATGGCTGTGTGTCCAGGGAGCCATGGACCTGTACTACACCAACGCCATGGAGGCCCTTGGGCTGCTGGTCCTCACGCTGGCCCTCTTCACCATATACGTCTTCTGGACCATGGTACGCTCAGGGTCTCTGTGCGCTACCACATGCATCTGTTCCAGACATGGAAGAAGACGGACCAGAGAGTGCGACTGCAGATTCCCTTGCCCCCCCATACCACAACGACCCAACAGACCCTGTCCATAAACCTCCTCAGCAAAGCCCCCAACAAAGAGACTATGGTGTAGTAGACTGCAGTCTACATTACTGAACATACCTCAGATAGAAGGGAAGAGGGGACCCAAACTCAGGACATGCCCCAATCCCGACATAACAGCAGAGTTAAAGCCAGGGTTGGAAGACTCCTTCAAGAGCTGCTGGAACCTTTTCGGGAACAATTGAGTTAAAGGAGCAAAGACTAACCGAGACTCCTCGCAACCTTTGACTTGTCTTACAGCGATAAAATGTGACATTGTCCCAAAATAAGAAGAGTCATTCTGGCAACTGTGGACATGTTCGGTATCTTCTAGAGTCTACAGTGACAATCAGTATCATTGTTTCCTGAAGACAACGAAGCATCCTGGACTTATCTGACAATCCAGTTGTTTTTCCTCCTCGTGGAATAAGCTCATGAAGACAAATCTGTTGCAACTTGGCACTTCTAATATCTACAACGCGAGTGTGTTTAACTTATAATTAGAAGAACTAAAGTCCAGCTTTGTAGCTCTTCAGCTGTTCAGATTTGAATCATACTATTACAAACTTTTAAGTTAGGCTTTGCTCATTATTCATGACATAGCTGATCGTAGCGTTTCTAcggcgttccatttacctcagaAGTCGgaaatgacgtcacacccgagcTGACCGCAGTTACAACTAGAGATGGTCCCATAATATTTTTTGAGTATCGGCCGATACTTAATACCGATCAGATACcagtatggatgtgatatgatttctataaTTTTTTGTACAGTCTGGCTCGGGTTAaagcttttgtgaaacaggaacacaaacaaacaacgaATGCCGTAGAATTTTATTTTACTCTCCAGTTTGTCATAGCGGACAAAGAACAAAAATTACTTCCAAGTAGATTTTCTTGAGGTCTAAATTACGTGGTATCAGATCGATGCATAGAGATCCAGAGTTCCAATactgataccagcattttaggcagtatcggaggcttttcccaatactggtatcggtacCTCTCTAGTTAAAAGTCGGAAAAAACGGGGGTAAGGGGTACTCCCGCCCGGCTAGCCATTGtcagcaataccagttgatagcAACGCACTACGTTGTACTTTGTGCAGTCAAACACCATAGCAACATGCCCACAAATAGAAGCTGGACAGAACTGTGTGTACGATTGATTTAATGAGACAGAAGTGCTCAAAAACTGTATACAACCACAGCTTTTACTACTGTTAAAGCtcagagcagccatgttggatggTGGTGGCTGTGTTGGTGAGGTTCTCCCtactttccccccccccagagTCGAGAGCGATGCAATGACGTCTTTGCAGAAACAGTGTCCCTTATATCCACCGATCTCATTGTGACGTTTCATTGGAACTACTTTCTGAAGTAGTCCCTATGAAAATTAGTAATCATTTCATTGATAGGAAGGTTTCCGGCCATCAGTTTCTTATTTTTTGGCACTCTAAAATAATAGTTGTGGGCTGCTCAGAGATCTTTGTTAGTATTCCAACTTTACCACAGCAGCCAGACGCAAAATCATTTTGCAATATTTAAGCCATTTCCTGCATTAACACTTATGCATATGCGCAAAATTTATGCACATCAAAAAGTGGAAGAATCAAACCTGTTGCGTTTTGTGGACTACCCTGAGAAACCAGGATACAGTTTCTAAAAATCTGCATGGTAAATACCAGAGGAAAGTGAGAAAGGGTGTTTGAAAATGTGCAAATGACATTTGTTGGGTATTTGGGTGAACCAACCCTTTAACCTGTGCTGCTTCCTCCGGCTATTCATTTTAGTTCTTAACAGTAAGTTAAGTGTTGTGTGAGCCTTCCAGCACAGCTTCTCCTGCAAAATTTAACTAGAATGCTTTTGTTGTAATAAACAGTCTTAATACAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH3-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039794992.1 False 2787 mRNA 0.47 5 7317911 7330702
XM_039794993.1 True 2800 mRNA 0.47 5 7317909 7330702

Neighbor

gene id symbol gene type direction distance location
sh3gl3a LOC100692766,LOC101467334,LOC103355412,LOC102293456 coding upstream 27039 7232548 ~ 7290870 (+)
bnc1 bnc1 coding upstream 106332 7186729 ~ 7211577 (+)
LOC120555501 NA coding upstream 822188 6493937 ~ 6495721 (+)
mtch2 mtch2 coding upstream 1006769 6295097 ~ 6311140 (+)
trnal-uaa_1 NA coding upstream 1265012 6052815 ~ 6052897 (+)
adamtsl3 LOC101469981 coding downstream 24175 7354877 ~ 7670801 (+)
LOC120555922 NA coding downstream 444931 7775633 ~ 7783499 (+)
efl1 efl1 coding downstream 608510 7939212 ~ 8069667 (+)
mex3b mex3b coding downstream 810182 8140884 ~ 8146927 (+)
LOC120556467 tmc3 coding downstream 1214559 8545261 ~ 8601678 (+)
G25942 NA non-coding upstream 19208 7298499 ~ 7298701 (+)
LOC120556370 NA non-coding upstream 272748 7042183 ~ 7045161 (+)
G25902 NA non-coding upstream 292148 7023866 ~ 7025761 (+)
G25895 NA non-coding upstream 324705 6992995 ~ 6993204 (+)
G25893 NA non-coding upstream 325978 6987512 ~ 6991931 (+)
G25950 NA non-coding downstream 8 7330710 ~ 7337252 (+)
LOC120555850 NA non-coding downstream 299420 7630122 ~ 7632825 (+)
LOC120555849 NA non-coding downstream 302129 7632831 ~ 7634497 (+)
G25959 NA non-coding downstream 335094 7665796 ~ 7673941 (+)
LOC120555855 NA non-coding downstream 382597 7713299 ~ 7716158 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other upstream 312231 6993956 ~ 7005678 (+)
rwdd3 rwdd3 other upstream 922203 6382570 ~ 6395706 (+)
LOC120555541 NA other upstream 1028133 6262410 ~ 6289776 (+)
G25743 NA other upstream 1029832 6287048 ~ 6288077 (+)
G25708 NA other upstream 1282716 6034209 ~ 6035193 (+)
G26205 NA other downstream 1422999 8753701 ~ 8760301 (+)
G26236 NA other downstream 1738027 9068729 ~ 9155343 (+)
cers3a cers3,LOC102798777 other downstream 2002527 9333229 ~ 9378611 (+)
adamts17 adamts17 other downstream 2060406 9391108 ~ 9604462 (+)
asb7 asb7,LOC102792420 other downstream 2322876 9653578 ~ 9677027 (+)

Expression


Co-expression Network