ddb1 (ddb1)


Basic Information

Item Value
gene id ddb1
gene name ddb1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15079794 ~ 15154115 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795020.1
CCTAAACGGCTCACCTAACTACTTCCGGAAGTTTTTATTATCAATGATTTTGTCACTTGTGTGGGATTAAAACACTACTCTGgtgtttgtcttttgttgttgtcaAAAAATGTCGTACAACTACGTGGTAACCGCTCAGAAACCTACGGCAGTCAATGCCTGCATCACAGGTCACTTCACCTCTGCTGAAGACCTCAATCTGCTCATAGCTAAAAACACACGGTTGGAGATCTATGTGGTGACAGCCGAGGGGCTGAGGCCCGTCAAGGAGGTGGGCATGTATGGAAAGATTGCTGTCATGGAGCTCTTCAGGCCAAAGGGTGAGAGCAAGGACCTGCTGTTCATTCTCACATCCAAGTACAACGCCTGCATCCTAGAATACAAACAGAACGGGGAGAGCATTGACATCATCACTCGTGCCCACGGCAATGTCCAGGATCGTATCGGGCGTCCATCGGAAACGGGTATCATTGGAATTGTAGACCCAGAATGCCGTATGATTGGCCTGCGGCTGTATGACGGGTTGTTCAAGGTGATCCCATTGGACCGGGACAACCGTGAGCTCAAGGCCTTCAACATCAGACTGGAGGAGCTGCAGGTCATCGACGTTCACTTCCTGTATGGCTGCCAGGCCCCAACCGTCTGCTTCATCTACCAGGACCCCCAGGGACGCCATGTGAAGACCTACGAGGTTTCTCTGAGGGAGAAGGAGTTCAACAAGGGCCCCTGGAAACAGGAGAATGTGGAAGCTGAGGCATCTATGGTCATCCCGGTGCCAGAGCCATTTGGTGGAGCTATAATCATAGGACAAGAGTCCATCACCTACCACAATGGAGATAAATACTTGGCCATTGCACCACCTACTATCAAGCAAAGCACCATCGTCTGTCACAACCGGGTGGACCCCAATGGCTCTCGCTACTTGCTGGGGGACATGGAGGGACGTCTGTttatgctgctgctggagaaggAGGAGCTCATGGACGGCACCGTGGCGCTCAAAGACTTGCACGTGGAGCTGCTCGGAGAGACATCCATTGCTGAGTGTTTGACCTACTTGGATAACGGCGTGGTCTTTGTGGGCTCCAGACTGGGCGACTCCCAGTTAGTGAAGCTCAACGTGGACAGCAATGAACAGGGCTCGTATGTGGCGGTGATGGAGACGTTCACCAACCTGGGGCCCATCGTGGACATGTGTGTGGTGGACCTGGAGAGGCAGGGCCAGGGCCAGCTGGTGACGTGCTCTGGTGCGTTCAAGGAGGGCTCCCTTCGGATCATTCGCAACGGCATTGGGATTCATGAGCATGCCAGCATTGACCTTCCGGGAatcaaagGCTTGTGGCCGCTCCGCTCAGAGGCAGGCCGAGAGACAGATGACATGCTGGTGCTGTCTTTCGTGGGACAAACACGAGTGTTGATGCTGAGTGGCGAGGAAGTCGAGGAGACTGAACTTCCCGGCTTCGTGGACAACCAGCAGACCTTTTACTGTGGCAACGTGGCGCACCAGCAACTCGTTCAAATCACGTCGGGCTCTGTGCGCCTGGTGCTCCAGGAGAGCAAGGCATTAGTGAGTGAATGGAAGGAGCCACAGGGCAGGAACATCAGCGTGGCTGCCTGTAACCACACCCAGGTGGTGCTCGCCGTGGGCCGAGCCCTCTACTACCTGCAGATCCTGGCTGGAGAGCTCAAACAGATCAGTACCACGGAGATGGAGCACGAGGTGGCCTGCCTGGACATCACACCTCTGGGGGAGGGTGGCGGTGAGTCACCGCTCTGCGCTGTGGGACTCTGGACTGACATCTCAGCCCGTGTGCTCAAACTGCCCTGCTTTACAGCCCTGCACAAGGAAATGCTCGGCGGAGagATCATCCCTCGCTCCATCCTAATGACCACCTTCGAAGGCAGCTACTACCTGCTGTGTGCGCTGGGAGACGGAGCGCTCTTCTACTTTGGTCTGGACCTGCAGACTGGCGCCCTGAGCGAGCGTAAGAAGGTCACGCTCGGCACTCAGCCCACCGTGCTGAGGACCTTCAGGTCCCTGTCCACTTCCAACGTCTTCGCCTGCTCCGACCGACCCACTGTCATCTACTCGTCCAACCACAAGCTGGTATTCTCCAACGTCAACCTCAAGGAGGTCAACTATATGTGCCCACTCAACTCGGAGGGTTATCCCGACAGTCTGGCTCTGGCCAACAACAGCACTCTGACCATCGGCACCATCGACGAGATTCAGAAACTCCACATTCGCACCGTTCCCCTCTATGAGTCTCCCAGGCGGATCTGTTACCAAGAGGTTTCCCAGTGTTTCGGGGTTCTATCCAGCAGGGTGGAGATTCAAGATGTGAGCGGCACCACATCTGCTGTGCGCCCCAGTGCCAGCACTCAGGCTCTCTCCAGCAGCGTGAGCTCCAGCAAGCTCTTCCCCAGCAGCACTTCTCCCCATGAGACCTCCTTTGGTGAAGAGGTGGAGGTTCACAGTCTGCTAGTCGTGGATCAGCACACCTTTGAAGTCCTCCATGCCCATCAGTTCCTCCCCAGCGAGTACGCTCTCAGTATGGTGTCATGTCGTCTGGGAAAAGACCCATCAGTGTATTTTATCGTCGGCACCGCCATGGTGTACCCAGAGGAGGCTGAGCCCAAGCAGGGACGCATCATTGTCTTCCACTACACTGACGgtaAGCTGCAAACTGTGGCTGAGAAGGAGGTGAAAGGAGCTGTCTATTCTATGGTGGAGTTCAATGGCAAACTGCTGGCCAGCATCAATAGCACAGTCCGTCTGTACGAATGGACGGCTGAGAAGGAGCTGAGGACCGAGTGTAACCACTACAACAATATCATGGCTCTTTACTTGAAGACCAAAGGAGATTTCATCCTTGTGGGAGACCTGATGAGGTCCGTCCTGCTGCTGGCGTACAAACCCATGGAGGGCAACTTTGAAGAGATTGCGCGTGACTTTAATCCTAACTGGATGAGTGCTGTGGAAATCCTGGACGACGACAACTTCCTCGGGGCGGAGAATGCATTCAATCTGTTTGTCTGCCAGAAGGACAGTGCGGCCACCACAGATGAGGAGCGGCAGCACCTGCAGGAGGTGGGGGTCTTTCACCTCGGGGAGTTTGTAAATGTCTTCTGCCACGGCTCGCTGGTGCTGCAGAACCTGGGCGAGAGCTCCACGCCAACCCAGGGCTCTGTGCTCTTCGGCACAGTTAACGGCATGATTGgtctGGTGACGTCCCTGTCCGAGGGCTGGTACAGCCTCCTCCTGGACCTGCAGACCCGCCTCAACAAGGTCATCAAGAGCGTGGGCAAGATCGAGCACAGCTTCTGGAGATCCTTCCACACGGAGCGTAAGACAGAGCAAGCCACAGGATTCATCGACGGGGATCTGATTGAGAGCTTCCTGGATCTGGGTCGAGCCAAGATGCAGGAGGTCGTCAGTACTCTACAGATCGATGACGGCAGCGGCATGAAACGTGAAGCCACAGTGGACGAGGTCATTAAGATTGTGGAGGAGCTGACGAGGATCCACTAACCCCGACCGGCATCCGGACGCCCGCTGAGTGAGAGGAGCGTCCCGAGGAGCAGCGATGGTCAAAAACGCCGAGGAAGGGTTTTGGTTTTGCAGATTtgtaaataattataaataaacagTTTGTGCATGTTCGTCCTTTTAGACTTCAATGATTTGTCAACCGTTGAGGCCCTGAAGGTGCTGCACGATGAGCGTAGCATTCTTTATTTAGACAAGAGTCTCTGGGCGAAGTGCGTAGCATCCTGTTtggacaataaaaaataaaaaaaaagaccaaagtaAAGACATTGGTCTGAGTGtgttggagtgtgtgtgggcatgtgtgATTGCGTCCGTGTGGAATAATGTGTGACTATAAAaaggaagaacaaaaaaaacagagattttCCTCACCAAAAACATTCTCTGGGATATATTTGTGACCGTTGCAGGCAGATCGAAGCAGTAAGAAGATCCTCTACACCCCACAGTTTAAATGTGACTGGCTTACACTTTtcaagtttattattgaagtcTGGAGTAAACACGCtgtgtgaaaaagaaaatggttaaaatgaTAGATTTATAGCTATTTTGTCTTTGTGATGTTTTCCTTGTTTATTCTAATAAACTTTGCTTTAGTACTGTTTA

Function

symbol description
ddb1 Predicted to enable DNA binding activity. Acts upstream of or within negative regulation of apoptotic process and regulation of cell cycle process. Predicted to be active in nucleus and site of double-strand break. Is expressed in blastomere; endoderm; nervous system; pharyngeal arch; and somite. Orthologous to human DDB1 (damage specific DNA binding protein 1).

NR:

description
PREDICTED: DNA damage-binding protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10610 DDB1; DNA damage-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795020.1 True 4162 mRNA 0.53 27 15079794 15154115

Neighbor

gene id symbol gene type direction distance location
LOC120555721 arl14ep,LOC102778030,LOC103375558 coding upstream 215005 14852285 ~ 14864789 (+)
fibinb fibin,LOC103373419,LOC106523552 coding upstream 373560 14702979 ~ 14706234 (+)
luzp2 luzp2 coding upstream 616501 14283159 ~ 14463293 (+)
cdkn1ca NA coding upstream 985473 14092864 ~ 14094321 (+)
traf6 LOC103361723 coding upstream 1024300 14048291 ~ 14055494 (+)
taldo1 taldo1,LOC102780893 coding downstream 208084 15362199 ~ 15374072 (+)
LOC120556051 NA coding downstream 220073 15374188 ~ 15392333 (+)
LOC120555952 LOC103368873 coding downstream 239669 15393784 ~ 15418775 (+)
cpeb1b cpeb1 coding downstream 336284 15490399 ~ 15504450 (+)
senp8 senp8,LOC103374590,LOC103374606 coding downstream 864153 16018268 ~ 16021643 (+)
G27459 NA non-coding upstream 14285 15062219 ~ 15065509 (+)
G27449 NA non-coding upstream 62289 15016584 ~ 15017505 (+)
LOC120556117 NA non-coding upstream 79507 14999704 ~ 15000287 (+)
G27432 NA non-coding upstream 121927 14957500 ~ 14957867 (+)
G27358 NA non-coding upstream 348148 14730817 ~ 14731646 (+)
G27565 rps17,LOC101480409,LOC100699764,LOC107389132 non-coding downstream 369859 15523974 ~ 15531915 (+)
G27566 NA non-coding downstream 379888 15534003 ~ 15535415 (+)
G27567 NA non-coding downstream 391376 15545491 ~ 15545779 (+)
G27568 NA non-coding downstream 392329 15546444 ~ 15546655 (+)
G27613 NA non-coding downstream 664493 15818608 ~ 15819369 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 26172 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 114732 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 344618 14708562 ~ 14735176 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other upstream 1223371 13809935 ~ 13856423 (+)
slc35c1 slc35c1 other upstream 1403181 13671477 ~ 13676613 (+)
LOC120556433 psma4,psa4,LOC106562664 other downstream 287340 15441455 ~ 15446492 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other downstream 321032 15475147 ~ 15486451 (+)
LOC120555788 NA other downstream 2570430 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 3407758 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 3920193 19074308 ~ 19087064 (+)

Expression


Co-expression Network