rs1a (rs1,LOC101067478)


Basic Information

Item Value
gene id rs1a
gene name rs1,LOC101067478
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18721369 ~ 18728722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795069.1
GTAATCCAGCCTCTCTATCACGGCTGGCTCGGTTGCTCAGTGTACAGTCGGTGTCGTCTGGTTTGGAGCAGGTTGGAAGATGGCTCTCTACGTGCAGCGTTTCCTGCCGGCCCTGCTTCTTCTGGGAGCTAACGTGTTCATCAGCACTCACGCTCAAGAGGAGGGAGTGTCTGAGGCGTGGACCAGCAGGTCTTGCAAATGTGATTGTGAAGGAGGAGAATCCCCGACCGAGTTTTCCTCCATTGGGACCGGCTCTTCCATGGTGCGAGGAGTGGACTGCATGCCAGAATGTCCGTATCACAAGCCTCTGGGCTTTGAGGCCGGATCGGTGAGTCCAGACCAGATCACCTGCTCCAACGAGGACCAGTACACCGGCTGGTTCTCCTCATGGCTCCCGGGCAAGGCCCGGCTCAACAGCCAGGGCTTCGGGTGTGCCTGGCTGTCTAAGTTCCAGGACAGCAATCAGTGGATGCAGATCGACCTGAGGGAAGTGATGGTGGTGTCGGGGATCCTCACTCAGGGCCGCTGTGACGCTGATGAGTGGATCACCAAGTACAGCGTTCAGTACCGCACAGACGAAAAACTCAGCTGGATCTATTACAAAGACCAGACTGGAAACAACAGGgtgttTTACGGAAACTCTGACCGCTCCTCGTCTGTGCAGAACCTCTTGCGGCCGCCCATCGTGGCGCGCTACATCCGCATCCTCCCCCTTGGATGGCACACACGCATCGCTCTGCgtctggagctgctgctctgcatgAGCAAATGCAGTTGAACCTTTCCTCCCCGCCATCCCAGAGGCCTTGTCCCAAAACCTTATCTACACCTAAATCACCCCATCGTCAAAGTGTGAGGTCTGTCATTGCATCCACAGATTTGGACCCCCTCCAGCTACATGTATTAAACCACAAGTTGAAGACAAAAACATTctgtttttaaaatacaaacaaaccaGTTTGACTTATGTGATttcattaaaaatatttatgtgaTGTGCTAAATGAGCTTCATTCACTGCACTCTCCATTGTCAATGTAAAACCATTCTCATACTGGGGGGTTTAATTTGGTGAGTTCTCAATAGATTGTTCCATTTGCAATGAAATGGCATAAATTCAAAGCAATaattagacagagagagagagagagagagagagagagagagagagagaggcagcgtTGCTATGGAGGTTGTATCCAATGGTCTGAGACAAGCTCTTCCAACACATTTGTGTCCTCCTGTTAAATTCTCCGTCTCCTGATATGTAACAGTATAAAACAGGGACCTCTTAGTCCGTCTTTCCTTATTTCCCTTAAAGTATAAGACTGGTGATGCAGTGATATTCTACATGTTTCttactgtcaacaaatcccataaaaagaccaaaaccaacaataaatTGATCCTACCAACAAGTATTGTTTGTGTGACCAAAGCCatatatgttatttttaatatatttatttttattactcccaaaaaatattaaaaacacatcaatgagccacacagTTGCATATATGTGACACATCTGTTCATTACAAAGAACAtaggcactgtagtttattttgagtcaataaCATACACATGATCCTGCTGCTCTAAATACTCAATGGTTCAATGTGAAGAAATGTGTATTAAAGCCCAGCacaaaatagtccccaacaaatgcactatttactcctgtttgagtaaatgttgctaaaaactacagtgcccagctgatTTAGAAAATCACTTAgcctttttaaaaagtatataATTGTGAccacctttaaaaaataaaataaaaatcatcttCAGTTTGAACAAATTGTTTTAGTTCTGACTAATGGTCTTAGTTCTGAGTGCCACAGACAGGATAGAGAAGCCAGAAAGTGTTGAGAAAATGACTAATGCGTTGTTGATTTTGGTATTTTCATGGGATTTTTTGATGACAAGAAAAATGTGGAATAATGCCAGactttttctttaaatacaCCTGTGATTTAACttcctgttttctctttttttttgtaaacatgcATCACTTTTACCGGTATCAATCTTCAGTGCTATATAAAGATCAAGGAATGGAAAATTCACTAATGTTCAGATGTGGATTTGTGTTGTGGTttactcctgtttttttctgtaacatTTCAATTCAGTTTCCCATGGTGCTTTGGGGATATTGTTAGATCTCTAAACTATTTCCTTGATTAAATGAATACTTGTGTCATGTC
>XM_039795071.1
GTAATCCAGCCTCTCTATCACGGCTGGCTCGGTTGCTCAGTGTACAGTCGGTGTCGTCTGGTTTGGAGCAGGTTGGAAGATGGCTCTCTACGTGCAGCGTTTCCTGCCGGCCCTGCTTCTTCTGGGAGCTAACGTGTTCATCAGCACTCACGCTCAAGAGGGAGTGTCTGAGGCGTGGACCAGCAGGTCTTGCAAATGTGATTGTGAAGGAGGAGAATCCCCGACCGAGTTTTCCTCCATTGGGACCGGCTCTTCCATGGTGCGAGGAGTGGACTGCATGCCAGAATGTCCGTATCACAAGCCTCTGGGCTTTGAGGCCGGATCGGTGAGTCCAGACCAGATCACCTGCTCCAACGAGGACCAGTACACCGGCTGGTTCTCCTCATGGCTCCCGGGCAAGGCCCGGCTCAACAGCCAGGGCTTCGGGTGTGCCTGGCTGTCTAAGTTCCAGGACAGCAATCAGTGGATGCAGATCGACCTGAGGGAAGTGATGGTGGTGTCGGGGATCCTCACTCAGGGCCGCTGTGACGCTGATGAGTGGATCACCAAGTACAGCGTTCAGTACCGCACAGACGAAAAACTCAGCTGGATCTATTACAAAGACCAGACTGGAAACAACAGGgtgttTTACGGAAACTCTGACCGCTCCTCGTCTGTGCAGAACCTCTTGCGGCCGCCCATCGTGGCGCGCTACATCCGCATCCTCCCCCTTGGATGGCACACACGCATCGCTCTGCgtctggagctgctgctctgcatgAGCAAATGCAGTTGAACCTTTCCTCCCCGCCATCCCAGAGGCCTTGTCCCAAAACCTTATCTACACCTAAATCACCCCATCGTCAAAGTGTGAGGTCTGTCATTGCATCCACAGATTTGGACCCCCTCCAGCTACATGTATTAAACCACAAGTTGAAGACAAAAACATTctgtttttaaaatacaaacaaaccaGTTTGACTTATGTGATttcattaaaaatatttatgtgaTGTGCTAAATGAGCTTCATTCACTGCACTCTCCATTGTCAATGTAAAACCATTCTCATACTGGGGGGTTTAATTTGGTGAGTTCTCAATAGATTGTTCCATTTGCAATGAAATGGCATAAATTCAAAGCAATaattagacagagagagagagagagagagagagagagagagagagagaggcagcgtTGCTATGGAGGTTGTATCCAATGGTCTGAGACAAGCTCTTCCAACACATTTGTGTCCTCCTGTTAAATTCTCCGTCTCCTGATATGTAACAGTATAAAACAGGGACCTCTTAGTCCGTCTTTCCTTATTTCCCTTAAAGTATAAGACTGGTGATGCAGTGATATTCTACATGTTTCttactgtcaacaaatcccataaaaagaccaaaaccaacaataaatTGATCCTACCAACAAGTATTGTTTGTGTGACCAAAGCCatatatgttatttttaatatatttatttttattactcccaaaaaatattaaaaacacatcaatgagccacacagTTGCATATATGTGACACATCTGTTCATTACAAAGAACAtaggcactgtagtttattttgagtcaataaCATACACATGATCCTGCTGCTCTAAATACTCAATGGTTCAATGTGAAGAAATGTGTATTAAAGCCCAGCacaaaatagtccccaacaaatgcactatttactcctgtttgagtaaatgttgctaaaaactacagtgcccagctgatTTAGAAAATCACTTAgcctttttaaaaagtatataATTGTGAccacctttaaaaaataaaataaaaatcatcttCAGTTTGAACAAATTGTTTTAGTTCTGACTAATGGTCTTAGTTCTGAGTGCCACAGACAGGATAGAGAAGCCAGAAAGTGTTGAGAAAATGACTAATGCGTTGTTGATTTTGGTATTTTCATGGGATTTTTTGATGACAAGAAAAATGTGGAATAATGCCAGactttttctttaaatacaCCTGTGATTTAACttcctgttttctctttttttttgtaaacatgcATCACTTTTACCGGTATCAATCTTCAGTGCTATATAAAGATCAAGGAATGGAAAATTCACTAATGTTCAGATGTGGATTTGTGTTGTGGTttactcctgtttttttctgtaacatTTCAATTCAGTTTCCCATGGTGCTTTGGGGATATTGTTAGATCTCTAAACTATTTCCTTGATTAAATGAATACTTGTGTCATGTC

Function

symbol description
rs1 Predicted to enable phospholipid binding activity. Involved in protein homooligomerization and visual perception. Located in extracellular space. Is extrinsic component of plasma membrane. Implicated in X-linked juvenile retinoschisis 1 and retinoschisis.

NR:

description
PREDICTED: retinoschisin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795069.1 True 2228 mRNA 0.43 6 18721369 18728722
XM_039795071.1 False 2225 mRNA 0.43 6 18721369 18728722

Neighbor

gene id symbol gene type direction distance location
phka2 phka2 coding upstream 22871 18677341 ~ 18698498 (+)
zrsr2 zrsr2 coding upstream 50381 18664507 ~ 18670988 (+)
LOC120556269 tm6sf1 coding upstream 57379 18659862 ~ 18663990 (+)
LOC120555930 NA coding upstream 78570 18639282 ~ 18642799 (+)
LOC120555641 whamm,LOC102778540 coding upstream 116399 18585773 ~ 18604970 (+)
scml2 scml2 coding downstream 41660 18770382 ~ 18797783 (+)
ace2 ace2 coding downstream 147230 18875952 ~ 18889502 (+)
zgc:113276 LOC104963547,LOC103365175 coding downstream 170725 18899447 ~ 18909277 (+)
pir pir coding downstream 181364 18910086 ~ 18925628 (+)
vegfd vegfd coding downstream 197316 18926038 ~ 18933824 (+)
G28195 homer2 non-coding upstream 105560 18607305 ~ 18615809 (+)
G28163 usp8,LOC102785891 non-coding upstream 276073 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 540168 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 802173 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 832152 17888761 ~ 17889217 (+)
LOC120556026 NA non-coding downstream 117547 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 325402 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 328824 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 343098 19071820 ~ 19072036 (+)
LOC120555698 NA non-coding downstream 358473 19087195 ~ 19091823 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 145427 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 977921 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3234918 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3274877 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3667747 15047877 ~ 15053622 (+)
LOC120555697 NA other downstream 345586 19074308 ~ 19087064 (+)
G28581 NA other downstream 758524 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 783634 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1043397 19772119 ~ 19993954 (+)
G28770 NA other downstream 1982382 20711104 ~ 20761147 (+)

Expression


Co-expression Network