sv2ba (LOC103359500,LOC101162590,LOC101062552)


Basic Information

Item Value
gene id sv2ba
gene name LOC103359500,LOC101162590,LOC101062552
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 301918 ~ 326728 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795074.1
atgaCCGAGGAATCAAAAGAATACAACCGCAGGTTACAGAAAGTGGAAGAATGCAGGTACACAAAGGATGTAGGAGGGAAAAGAGCCAAGACGGACTACCCTCCACAGGACGAGGATGCTCGTAGCGATGTCACCGAGGGCGCAGATGATGATGAGCAGATGTATGAGGGAGAGTACCAAGGCATCCCCCACCCTGACGAGATCAAGGAGGCGCGGCGGGCAGCTCGGTTGGAGGCCAGGAGGAAAGCCCGTCAGGCTGCCcagcaggaagaggaggaagaaaaccTGCCAGAGCAGTACGAGGCCATCATGGAGGACTGCGGCCATGGACGCTTCCAGTGGATGCTGTTCTTCGTGCTGGGCCTTGCACTAATGGCTGACGGAGTGGACGGCTTCGTGGTGGGCTTCGTTCTGCCCAGTGCTGAGAAGGACATGTGCATATCCAACTCTGACAAAGGACTGCTCGgtCTGCTAGTGTATGTGTCCATGATGGTGGGGGCGTTGGTGTGGGGGGGTCTGTGTGATAAGATGGGGAGGAGGAAGTGTCTGATCTACGTCCTGACCATCGACCTGGTCTTCTCCTTCCTGTCCTGCTTCGCTCAGGGCTAcggcttcttcctcttcttcaggTTCTGCTCCGGCTTTGGAATTGGCGGCTCCATCCCGATAGTGTACACTTACTTCACAGAGTTCCTTCAGATGGATAAACGTGGAGAACATCTTAGCTGGCTCTGCATGTTCTGGATGCTGGGAGGCCTGTACGCCTCCTTCACCGCCTGGGGAATCATCCCTCACtatggcTGGGGCTTCGCCATTGGTACAGAGTTCCAGATCCACAGTTGGAGAATATTCATTCTGGTGTGTCTCTTCCCTGCACTGGCTGCACTTGTCGGAGTCATCTTCATGCCGGAGAGCCCTCGTTTCCTCCTGGAGAGTGCCCGGCATGATGAGGCGTGGATGGTCCTGCGACGAGTTCACGACACCAACTGGAAGGCCAAGGGGGAGCCAGAGAGAGTCTTCACTGCGACCAACATTAAGACACCACAAACTCAGGAGGACGAGTTCATAGAGATCCAGAGTGACACGGGAACTGCCTTCCAGCGCTGGACCGTCAGACACATGACCATGCTGCAACAGGTGATGGCAAACATCATGTCACTATCGGCCCCAGAGCTCAGACTGCAAGGCCTCTTCCTGGTTATTGTCTGGTTCTGCTTGGCCTTCAGCTACCACGGGCTGGGAGTGTGGTTTCCTGATATGATCAAATACATGCAGTATGAGGAGTACGAGTCCAAAGTTAAAGTGTTCCACCGGGAACGGGTCGAACATTTCCACTTCAACTTCTCTCTGGTCAACCAGATCCACCGCGAGGGAGAGTACATCCATGACAAgTTTGCAAACATTGAGATTAAGTCTGTGAAGTTTGAGGATTCTCTGTTTGAAAACTGCTACTTTGAGGATGTCAGGTCAACCAGCACCTTCTTTGAGAATTGCACCATCAAAAACACTGTCTTCTATAACACAGACTTCTGGCAGGAAAAGTTCAAAGACTGTCAGATGGAGAACACCACTTTCCTCCACCCAAAAAAAGGCTGCCATCTGAACTTCGAGGTGGAGAACGACATCGTCATCTACATGGTCAGCTTCCTGGGCAGTTTGGCTGTGTTGCCTGGCAACATCATCTCAGCATTGTTCATGGACAAGATAGGACGAATCAGAATAATAGGTGGTTCTATGTTGGTGTCGTCTGCCTGTACTTTCCTGTTGCTGCTAAGTTTCAGTCAAGGAGCTGTAATATGTTGGCAGTGTCTCTTCTATGGCACCAGCGTGGCGGCCTGGAATGGATTACAGGTCATTTCTGTGGAACTCTACCCCTCCTCTAAAAGAGGGACAGCGTTCGGTATCCTGAATGGGATCTGTAAGTTTGCTGCCATCCTTGCCTGCTCCATATTTGCAGCCTTTATTGGCATCACTAAGATCATCCCCATCTTCCTGGCCTTCGCCGCCCTCGTCTGCGGAGGTCTGGTAGCTCTGAAGCTGCCTGAAACCCGGGAGAAAATCCTCACTTGAAAAGCCAAACTCCTGCAGCCTCCAGGCCTCAACCACTGTATATCTATGGGGAAAAGCTTTTTGGAAGTGTATCAGCTTAAACTGAATTGGAAAGACAAGTAAGAAAGACCAGCTAGCTGTGTTATTATGAGTTATGattaaacattttgaaatcCTGTCTGGTTGCCTATGTAAACCTGGGGTTGCTTTTTTATTCCCTGTGTAAGCTCCTCAGACTGCCCAGCATTTCTGTGACATCATATAAAAGTTGTGTTTGTCATTTCCTTTGTATCATTTACTGCTCATCCtttactctctcacacatacagacacacacagacacacagacacacacacacacacacacacacacacagtgtagaaacatttgttttgtttgaggtttgtgtaaaagaaaaaaattacatGAGATGAAAATATGTCTGTACGTGAAAGGTGATGTAGTTCATGTTACCATGTTGTGCTTTGATTTCATTCCCtgttggaaaaaaaggaaagagagaggacttATAGCCGTTGACTATTATCAACTTGAATTGGATTTGAATGCTGTTGTATTCCACCGTGGCTGGGCATCAATATTACTGCTGGTGTTGTTATTTAGAGAAAACACATCTTTTGTTCCCCCAATCTTAATTTATCCTGCACTGTATATAGTATTCTTTAGTTCCCATGTTGTTGCTTCGTTTGATCTCTCTAGACATAAACCTGGATTGACCATTTTCTTAAATGTaggattgtttatttttatttattttttaatcctctACTGTTCATTTCTCCCAGCTGATTCAAATCCAACCTAAACAGCCGACTGGATTCGCCTCCTGTTTGCCGTCTTGTCCTCGACTGGGACGTTGTGTCTGTTATGTGTTCTGTAGCTGGTGATAACGTAGAATCAGAGTCTAATAAGTCACATCTTGCCATGACATTGTGTAAGGAATTGTTCTGTTTgtttaattaattcatttttttttctaaataagaGAATGATACAAAACTGTGAGATTAGATGTTTTGATATGATGCTCTCATTTTGATGTTCTGATGAAGAACAGTTTTACAAAACCTGCTGCATTTCTGACATGTGTCAAGATTTCTAAGGAGCATGTTAGTTTTTTCTGCATgactgagctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgcatgcatgcgcgTGCGCTCCCGTGTGGTTGTTATCCACATGTCTGTGAATTTACACAATAGTCTGACTACCAATactatatttgttgttgtacaTACTGTAGACCTGTGTATATTAGCTGTAAAATAGTAGCTCCATCATGACTTGAATAAAGCTGAGGGCTTATGA

Function

NR:

description
PREDICTED: synaptic vesicle glycoprotein 2B-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795074.1 True 3410 mRNA 0.47 14 301918 326728

Neighbor

gene id symbol gene type direction distance location
mespba LOC103359507 coding downstream 5631 293684 ~ 296287 (-)
mespaa LOC101162828 coding downstream 11543 289261 ~ 290375 (-)
igf1rb LOC103359504,LOC104920736 coding downstream 68324 173297 ~ 233594 (-)
lrrc28 lrrc28 coding downstream 134403 160255 ~ 167515 (-)
LOC120555880 LOC104920738,LOC101079833,LOC103149866,LOC103379309,LOC103462608,LOC100696143,LOC107382039,LOC101468238 coding downstream 148527 100108 ~ 153391 (-)
mrpl46 mrpl46 coding upstream 695235 1021963 ~ 1030055 (-)
pdpr pdpr coding upstream 711027 1037755 ~ 1056294 (-)
LOC120556384 LOC104919714 coding upstream 849734 1176462 ~ 1190886 (-)
tdp1 tdp1 coding upstream 866312 1193040 ~ 1203082 (-)
LOC120555617 NA coding upstream 1132436 1459164 ~ 1507908 (-)
G24785 NA non-coding downstream 121708 179310 ~ 180210 (-)
G24782 NA non-coding downstream 207266 93035 ~ 94652 (-)
LOC120555933 NA non-coding downstream 215218 85698 ~ 86700 (-)
G24818 NA non-coding upstream 3050 329778 ~ 330358 (-)
G24819 NA non-coding upstream 3667 330395 ~ 333131 (-)
G24833 NA non-coding upstream 100974 427702 ~ 470734 (-)
G24862 NA non-coding upstream 259304 586032 ~ 586344 (-)
G24864 NA non-coding upstream 264283 591011 ~ 591350 (-)
ntrk3b NA other upstream 379429 706157 ~ 921549 (-)
pnoca NA other upstream 734376 1061104 ~ 1105167 (-)
LOC120555898 mctp2 other upstream 1083946 1410674 ~ 1457108 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other upstream 1183437 1510165 ~ 1555646 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other upstream 1260816 1587544 ~ 1642348 (-)

Expression


Co-expression Network