shcbp1 (shcbp1,LOC104947898,LOC104967817)


Basic Information

Item Value
gene id shcbp1
gene name shcbp1,LOC104947898,LOC104967817
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10789845 ~ 10840149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795092.1
ATGGAGCAAGAAGCACGGGAAAACTCGTCTGCAGGAACGAGAAAAACTGGGGACGAGATGACAGACATGGTGGTTGATTTGGAGTCCTACGTTAAGGTTGAACTCGacatggaaaagaaaagaatagaaGTGGGGCGTAATGTGTCCGGTATAACTCAAGctctgtttcagaatgaagaggaggatgaagatgagagtgataatgatgatgaagatAGTGGCACAGACCATTTTAACTCTGAAAATTCAGGGACTAGGCTGCAAAGATGTGAGCGCCATGGAGCTGTGAATTCAAGTCTTCCTGACACCTTCCAGACCAGCCACCTGCTGTTCTATGAGAGATTCAAGGCGTACCAGGACTACATGCTCGgAGACTGTAAGCCATCTGAGGTAAAGGCCTTCACAGCAGACTACCTGGAAAAGGTGGTGGAACCGTGTGATTGGTTGGCTCTGTGGTCTACTAACGTCTTTGATGTCCTGGTGGAGGTGTGTGATGTGGACTTGAAGGATCTGAAGGCTTCTgtgaggctggtgctgcctttGCAGTGTGACACCAGAGGCTGTGAACTCACTGAGGAGGCCATGAAGTCTCTGCTGGAGGCCACTGAGCACAAAGTCCCTCTAAAGGAGCTCCAAGTGGTCTATGAGCAGTCTGGGGACTTTGATCAGACCGCCCTCGCTCTTGAGCACCTCAGGTTTTTCTATAAACACATCTGGAGGCAGTGGGATgaggaagatgaagatgatgacTTTGACTACTTTGTTCGTTGTGTGGAGCCTCGTCTCAGGCTCTACTACGACATCTTAGAAGACAGAGTCCCAGCAGGCCTGGTGGCAGAGTACCAGTCCTTACTGGAAAACTGCTTTCAGTGCTTCCAGCAGTTCTCTGTGTTGCGCAGTGGCCTCAGCACTGACTCAGACTCAGAGCTGGACAATGTATCCATGGTGGAGGGCCTGAAGCTCTACGACCAGCTGGAGACGTTCAAACGCAAGCTTCACATTATTGAGAACCCCCTGTTGAGGTATGTGCTGGGCTACAGAGGCAATGCCAGGCAACAGTGTGTGCAGAGCCGTGGACTCAGAGCATCAGGTATAAAGGTGGTCCATGTGGTCACAGCCTCCTGCAGCACTATCCAGCTCCAGTCCCTCCTTTGTGACAGACTGCTGCCACTGTGTTCCTCTGAGGACACAGAGATTCAGTTCCATAAAGACCCAGTGTCAGCGGTGGAAACATGCCATCAGGGTGACATGGTCATTGTTCTCCCAGGGATCTATAGTGTCAGCAGCTCCATATTCCTACCAGACTCCATCACTGTAGAAGGCTTCGGGCTTCCTGATGAGGTGGTGattgagaagaaaaacaaggGCGACTCATTTGTGGAGTCCACTGGAGCTGATGTCAGACTTTCTAACATCAAGTTTATCCAACACGATGCTATTGAGGGCATTCTGTGTGTGCGTCAGGGGACTCTGAACATGGAGAACTGTGTGCTGCAGTGTGAGACCACGGGGGTGATTGTACGAACATCAGCCCGTCTCACCATGAACATGTGTGACCTGTATGGCTCTAAGGGGGCTGGTGTGGAGATTTACCCCGGCAGTGTTTGCAGTCTGGTTGGTAACGGTATCCATCACTGTAAGGACGGTGTTCTCATCAAGGACTTTGCTGATGAGCTTGATGTGATGCCGTTAATCACCATGGAGAACAATGTGATCCACAACAATGAAGGCTATGGGGTGATTCTAGTGAAACCCAACAATGGGGAACAACATGGAGTTCCTCTGGACACAAGTGAAGAAAACCATACTGAACCAACCACAGAGAACAACAGCACAGGTGGTGACGCAGCCTCAACCTCAAGCAGAAAGTGGCAGTTTAGTCGTCAGCTGAGCAAAAACAAGGAGACGTCCTGCAGCCGAGCTGTCCAGGACCTGATGGACCACCAGATCTTCGTCTCCATTCAGGGAAACCAGTTCAGACGCAATGGGATGGGAGATTTAGGCACCTTTTTCTACTGACAAATAACTTCAACACTCTGAACTTTTCTATTGACAAAATGTCAGGCTGGACGTCAATACACGTCGGCAATCAGAACTAGCATGCGTCTTTTAAGATCTTCACCAGAGTTTATTTAATGGACAGTTTTTAGATGATTGCCTTTGTTTGGCAATATATACAATTAGCTAATTCACACCCATCCATTGTGTTCTGCAGAGACAATAATGTTCCTGTGTATCAAGTGTGTTGTGATCCATTACAAGCTGTGTGTTTCTAAAGCACTCTGGCTTCTGCCTGTTTGATGGTAAATTGATCCCCACGTTTGCACCAATGcttttatcttatttatttcttcGGGCATCTGACgctaaatgtttttaatttttttttaatgcataatTTGTTTGAAATCCACTTTAGTCACGTTTAATGCAGTTTTGGTAGTTCCACTtcaaatgtaataaatgtaaccTTTTAAGGTAGTGAACGCAGTACGCAGTTAATTATAGATTTCACACAAATAttcattgttttctttgtttattaGTTAGATGTGATTTTCACGTGGTGCCTCTGTGTTTTATGGTTGAGGGAAGTCTTCAGGTTGACGGGCTCTAACAGTAGAAGCCCGGTGAAAATaatagagctgcaacaattagAAACGTATccaattattttgataatgaTTCATcgtttttagtatttttttatgcaaaaatGGCACACAAAAAATGCTGTGGTCAGCCTCTCGAATATGGCAATttcttgcttttctttgttttatgtcatattacactaAATATCTTGGGTTTTGGATAAAACAAAGACATTAAGAGTTATCACCTTATACTGAGGAACTGGGATggacatttttctttattttttagatCATCGATTAGCCTAAAAAATAAACTGATGTTTGATATTTAGATTGACTGATGATCCAAATGAGTCTTTGGTTTAAACTGCTACTTGTGGAAATTGTGAATATAATGAAAGTCCTGCAGATTAAAAAGTGTCTGTTGAAACGTC
>XM_039795093.1
CTCACAGGCGGTCGGATATTAGGGGGCGCGACATCCTGCCGTTGTACTTTTTTCGATTGGCTGCTGCTCTTCAGACCGGGAATATTTTGAAATTAACTGGctctgtttcagaatgaagaggaggatgaagatgagagtgataatgatgatgaagatAGTGGCACAGACCATTTTAACTCTGAAAATTCAGGGACTAGGCTGCAAAGATGTGAGCGCCATGGAGCTGTGAATTCAAGTCTTCCTGACACCTTCCAGACCAGCCACCTGCTGTTCTATGAGAGATTCAAGGCGTACCAGGACTACATGCTCGgAGACTGTAAGCCATCTGAGGTAAAGGCCTTCACAGCAGACTACCTGGAAAAGGTGGTGGAACCGTGTGATTGGTTGGCTCTGTGGTCTACTAACGTCTTTGATGTCCTGGTGGAGGTGTGTGATGTGGACTTGAAGGATCTGAAGGCTTCTgtgaggctggtgctgcctttGCAGTGTGACACCAGAGGCTGTGAACTCACTGAGGAGGCCATGAAGTCTCTGCTGGAGGCCACTGAGCACAAAGTCCCTCTAAAGGAGCTCCAAGTGGTCTATGAGCAGTCTGGGGACTTTGATCAGACCGCCCTCGCTCTTGAGCACCTCAGGTTTTTCTATAAACACATCTGGAGGCAGTGGGATgaggaagatgaagatgatgacTTTGACTACTTTGTTCGTTGTGTGGAGCCTCGTCTCAGGCTCTACTACGACATCTTAGAAGACAGAGTCCCAGCAGGCCTGGTGGCAGAGTACCAGTCCTTACTGGAAAACTGCTTTCAGTGCTTCCAGCAGTTCTCTGTGTTGCGCAGTGGCCTCAGCACTGACTCAGACTCAGAGCTGGACAATGTATCCATGGTGGAGGGCCTGAAGCTCTACGACCAGCTGGAGACGTTCAAACGCAAGCTTCACATTATTGAGAACCCCCTGTTGAGGTATGTGCTGGGCTACAGAGGCAATGCCAGGCAACAGTGTGTGCAGAGCCGTGGACTCAGAGCATCAGGTATAAAGGTGGTCCATGTGGTCACAGCCTCCTGCAGCACTATCCAGCTCCAGTCCCTCCTTTGTGACAGACTGCTGCCACTGTGTTCCTCTGAGGACACAGAGATTCAGTTCCATAAAGACCCAGTGTCAGCGGTGGAAACATGCCATCAGGGTGACATGGTCATTGTTCTCCCAGGGATCTATAGTGTCAGCAGCTCCATATTCCTACCAGACTCCATCACTGTAGAAGGCTTCGGGCTTCCTGATGAGGTGGTGattgagaagaaaaacaaggGCGACTCATTTGTGGAGTCCACTGGAGCTGATGTCAGACTTTCTAACATCAAGTTTATCCAACACGATGCTATTGAGGGCATTCTGTGTGTGCGTCAGGGGACTCTGAACATGGAGAACTGTGTGCTGCAGTGTGAGACCACGGGGGTGATTGTACGAACATCAGCCCGTCTCACCATGAACATGTGTGACCTGTATGGCTCTAAGGGGGCTGGTGTGGAGATTTACCCCGGCAGTGTTTGCAGTCTGGTTGGTAACGGTATCCATCACTGTAAGGACGGTGTTCTCATCAAGGACTTTGCTGATGAGCTTGATGTGATGCCGTTAATCACCATGGAGAACAATGTGATCCACAACAATGAAGGCTATGGGGTGATTCTAGTGAAACCCAACAATGGGGAACAACATGGAGTTCCTCTGGACACAAGTGAAGAAAACCATACTGAACCAACCACAGAGAACAACAGCACAGGTGGTGACGCAGCCTCAACCTCAAGCAGAAAGTGGCAGTTTAGTCGTCAGCTGAGCAAAAACAAGGAGACGTCCTGCAGCCGAGCTGTCCAGGACCTGATGGACCACCAGATCTTCGTCTCCATTCAGGGAAACCAGTTCAGACGCAATGGGATGGGAGATTTAGGCACCTTTTTCTACTGACAAATAACTTCAACACTCTGAACTTTTCTATTGACAAAATGTCAGGCTGGACGTCAATACACGTCGGCAATCAGAACTAGCATGCGTCTTTTAAGATCTTCACCAGAGTTTATTTAATGGACAGTTTTTAGATGATTGCCTTTGTTTGGCAATATATACAATTAGCTAATTCACACCCATCCATTGTGTTCTGCAGAGACAATAATGTTCCTGTGTATCAAGTGTGTTGTGATCCATTACAAGCTGTGTGTTTCTAAAGCACTCTGGCTTCTGCCTGTTTGATGGTAAATTGATCCCCACGTTTGCACCAATGcttttatcttatttatttcttcGGGCATCTGACgctaaatgtttttaatttttttttaatgcataatTTGTTTGAAATCCACTTTAGTCACGTTTAATGCAGTTTTGGTAGTTCCACTtcaaatgtaataaatgtaaccTTTTAAGGTAGTGAACGCAGTACGCAGTTAATTATAGATTTCACACAAATAttcattgttttctttgtttattaGTTAGATGTGATTTTCACGTGGTGCCTCTGTGTTTTATGGTTGAGGGAAGTCTTCAGGTTGACGGGCTCTAACAGTAGAAGCCCGGTGAAAATaatagagctgcaacaattagAAACGTATccaattattttgataatgaTTCATcgtttttagtatttttttatgcaaaaatGGCACACAAAAAATGCTGTGGTCAGCCTCTCGAATATGGCAATttcttgcttttctttgttttatgtcatattacactaAATATCTTGGGTTTTGGATAAAACAAAGACATTAAGAGTTATCACCTTATACTGAGGAACTGGGATggacatttttctttattttttagatCATCGATTAGCCTAAAAAATAAACTGATGTTTGATATTTAGATTGACTGATGATCCAAATGAGTCTTTGGTTTAAACTGCTACTTGTGGAAATTGTGAATATAATGAAAGTCCTGCAGATTAAAAAGTGTCTGTTGAAACGTC
>XM_039795095.1
CGGTCGGATATTAGGGGGCGCGACATCCTGCCGTTGTACTTTTTTCGATTGGCTGCTGCTCTTCAGACCGGGAATATTTTGAAATTAACTGGGTGTGTGCCGTTACGTTTctctgtttcagaatgaagaggaggatgaagatgagagtgataatgatgatgaagatAGTGGCACAGACCATTTTAACTCTGAAAATTCAGGGACTAGGCTGCAAAGATGTGAGCGCCATGGAGCTGTGAATTCAAGTCTTCCTGACACCTTCCAGACCAGCCACCTGCTGTTCTATGAGAGATTCAAGGCGTACCAGGACTACATGCTCGgAGACTGTAAGCCATCTGAGGTAAAGGCCTTCACAGCAGACTACCTGGAAAAGGTGGTGGAACCGTGTGATTGGTTGGCTCTGTGGTCTACTAACGTCTTTGATGTCCTGGTGGAGGTGTGTGATGTGGACTTGAAGGATCTGAAGGCTTCTgtgaggctggtgctgcctttGCAGTGTGACACCAGAGGCTGTGAACTCACTGAGGAGGCCATGAAGTCTCTGCTGGAGGCCACTGAGCACAAAGTCCCTCTAAAGGAGCTCCAAGTGGTCTATGAGCAGTCTGGGGACTTTGATCAGACCGCCCTCGCTCTTGAGCACCTCAGGTTTTTCTATAAACACATCTGGAGGCAGTGGGATgaggaagatgaagatgatgacTTTGACTACTTTGTTCGTTGTGTGGAGCCTCGTCTCAGGCTCTACTACGACATCTTAGAAGACAGAGTCCCAGCAGGCCTGGTGGCAGAGTACCAGTCCTTACTGGAAAACTGCTTTCAGTGCTTCCAGCAGTTCTCTGTGTTGCGCAGTGGCCTCAGCACTGACTCAGACTCAGAGCTGGACAATGTATCCATGGTGGAGGGCCTGAAGCTCTACGACCAGCTGGAGACGTTCAAACGCAAGCTTCACATTATTGAGAACCCCCTGTTGAGGTATGTGCTGGGCTACAGAGGCAATGCCAGGCAACAGTGTGTGCAGAGCCGTGGACTCAGAGCATCAGGTATAAAGGTGGTCCATGTGGTCACAGCCTCCTGCAGCACTATCCAGCTCCAGTCCCTCCTTTGTGACAGACTGCTGCCACTGTGTTCCTCTGAGGACACAGAGATTCAGTTCCATAAAGACCCAGTGTCAGCGGTGGAAACATGCCATCAGGGTGACATGGTCATTGTTCTCCCAGGGATCTATAGTGTCAGCAGCTCCATATTCCTACCAGACTCCATCACTGTAGAAGGCTTCGGGCTTCCTGATGAGGTGGTGattgagaagaaaaacaaggGCGACTCATTTGTGGAGTCCACTGGAGCTGATGTCAGACTTTCTAACATCAAGTTTATCCAACACGATGCTATTGAGGGCATTCTGTGTGTGCGTCAGGGGACTCTGAACATGGAGAACTGTGTGCTGCAGTGTGAGACCACGGGGGTGATTGTACGAACATCAGCCCGTCTCACCATGAACATGTGTGACCTGTATGGCTCTAAGGGGGCTGGTGTGGAGATTTACCCCGGCAGTGTTTGCAGTCTGGTTGGTAACGGTATCCATCACTGTAAGGACGGTGTTCTCATCAAGGACTTTGCTGATGAGCTTGATGTGATGCCGTTAATCACCATGGAGAACAATGTGATCCACAACAATGAAGGCTATGGGGTGATTCTAGTGAAACCCAACAATGGGGAACAACATGGAGTTCCTCTGGACACAAGTGAAGAAAACCATACTGAACCAACCACAGAGAACAACAGCACAGGTGGTGACGCAGCCTCAACCTCAAGCAGAAAGTGGCAGTTTAGTCGTCAGCTGAGCAAAAACAAGGAGACGTCCTGCAGCCGAGCTGTCCAGGACCTGATGGACCACCAGATCTTCGTCTCCATTCAGGGAAACCAGTTCAGACGCAATGGGATGGGAGATTTAGGCACCTTTTTCTACTGACAAATAACTTCAACACTCTGAACTTTTCTATTGACAAAATGTCAGGCTGGACGTCAATACACGTCGGCAATCAGAACTAGCATGCGTCTTTTAAGATCTTCACCAGAGTTTATTTAATGGACAGTTTTTAGATGATTGCCTTTGTTTGGCAATATATACAATTAGCTAATTCACACCCATCCATTGTGTTCTGCAGAGACAATAATGTTCCTGTGTATCAAGTGTGTTGTGATCCATTACAAGCTGTGTGTTTCTAAAGCACTCTGGCTTCTGCCTGTTTGATGGTAAATTGATCCCCACGTTTGCACCAATGcttttatcttatttatttcttcGGGCATCTGACgctaaatgtttttaatttttttttaatgcataatTTGTTTGAAATCCACTTTAGTCACGTTTAATGCAGTTTTGGTAGTTCCACTtcaaatgtaataaatgtaaccTTTTAAGGTAGTGAACGCAGTACGCAGTTAATTATAGATTTCACACAAATAttcattgttttctttgtttattaGTTAGATGTGATTTTCACGTGGTGCCTCTGTGTTTTATGGTTGAGGGAAGTCTTCAGGTTGACGGGCTCTAACAGTAGAAGCCCGGTGAAAATaatagagctgcaacaattagAAACGTATccaattattttgataatgaTTCATcgtttttagtatttttttatgcaaaaatGGCACACAAAAAATGCTGTGGTCAGCCTCTCGAATATGGCAATttcttgcttttctttgttttatgtcatattacactaAATATCTTGGGTTTTGGATAAAACAAAGACATTAAGAGTTATCACCTTATACTGAGGAACTGGGATggacatttttctttattttttagatCATCGATTAGCCTAAAAAATAAACTGATGTTTGATATTTAGATTGACTGATGATCCAAATGAGTCTTTGGTTTAAACTGCTACTTGTGGAAATTGTGAATATAATGAAAGTCCTGCAGATTAAAAAGTGTCTGTTGAAACGTC

Function

symbol description
shcbp1 Predicted to be involved in fibroblast growth factor receptor signaling pathway. Is expressed in alar plate midbrain region; nervous system; optic vesicle; proliferative region; and yolk syncytial layer. Orthologous to human SHCBP1 (SHC binding and spindle associated 1).

NR:

description
PREDICTED: SHC SH2 domain-binding protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795092.1 True 3031 mRNA 0.45 13 10790070 10840149
XM_039795093.1 False 2971 mRNA 0.45 13 10789845 10840149
XM_039795095.1 False 2981 mRNA 0.45 13 10789853 10840149

Neighbor

gene id symbol gene type direction distance location
LOC120555949 NA coding upstream 44519 10741710 ~ 10745326 (+)
LOC120555948 LOC103462314 coding upstream 180764 10527838 ~ 10609081 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding upstream 304534 10484463 ~ 10485311 (+)
LOC120555943 LOC103372586 coding upstream 324291 10425163 ~ 10465554 (+)
lrrk1 lrrk1 coding upstream 693206 9861152 ~ 10096639 (+)
minar1 kiaa1024,LOC107562943,LOC102799073 coding downstream 94484 10934633 ~ 11138398 (+)
LOC120555826 NA coding downstream 289772 11129921 ~ 11131472 (+)
LOC120556595 NA coding downstream 1191472 12031621 ~ 12031728 (+)
LOC120555527 NA coding downstream 1715898 12556047 ~ 12562553 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding downstream 2225803 13065952 ~ 13071332 (+)
G26605 NA non-coding upstream 17846 10770959 ~ 10771999 (+)
LOC120556100 NA non-coding upstream 129270 10659569 ~ 10660575 (+)
G26530 NA non-coding upstream 310484 10479022 ~ 10479361 (+)
G26526 NA non-coding upstream 334233 10455401 ~ 10455612 (+)
G26512 NA non-coding upstream 404204 10385230 ~ 10385641 (+)
G26634 NA non-coding downstream 38793 10878942 ~ 10879304 (+)
G26636 NA non-coding downstream 60479 10900628 ~ 10900858 (+)
G26639 NA non-coding downstream 75563 10915712 ~ 10916142 (+)
G26711 NA non-coding downstream 336725 11176874 ~ 11177288 (+)
G26712 NA non-coding downstream 337524 11177673 ~ 11179253 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 929845 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 1112818 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 1185383 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 1411234 9333229 ~ 9378611 (+)
G26236 NA other upstream 1634502 9068729 ~ 9155343 (+)
lto1 oraov1 other downstream 1063123 11903272 ~ 11912722 (+)
G27086 NA other downstream 2269608 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 2395086 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 2831328 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 2969786 13809935 ~ 13856423 (+)

Expression


Co-expression Network