tssc4


Basic Information

Item Value
gene id tssc4
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10766173 ~ 10789770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795096.1
CGTAAAGCAgatacagaagaagaagaagaagaagaagaagaagaagaggaagaagaggaagaggaagaggaagaggaagaggaagagttTGGTTGTGGAAAGCAAGAACAGTGAGGCAAACTGTGATTGATCAACAACAGTGAGTCTGCAGACCAACAAAGACAACATGGAcgctacaacagcagcacaaacatgaaggagaaccaggaaatgagtagggggaaatgcaactctaccaagccacggccgagcatCGCCgcaacgtgtagttacatttttcatcaGGTTATTGATTTAGCCGACCTGCTGATTCTTGTTAAGATGTGTGATCAGAAAAATTGTGGTGACCAAGGTGAGATGTTAAACACTGATGATGTGGACGAGCTGTCGGCCAGTGATGAATCTGAGCCTGAAGAACGACCAAGCATTGCTCCCTTTGACCCAGAGCTgaacgatgatgatgatgatgatgatgatgatgatgattatcgTGGAGAGGTTGAGATCTCTGCTCTAGCTGGACACCGAGCTCAGAGTTCCTTCAGTCTGAGAGGAGGGAGCTCAGCTTTCTCAACCCGTAGCCACAACATCTTTGAATGCCTGGACAGCGTTGCCCGGCCAACCACCTCCTCTCTGAGCCACGATAACGTTACTGACGGAGTATTTGCTCGGCCTCTGCCTCCACATCCCAGCAGAAAGACAAGTCAGCCTCTGGCCAACTGCCCCACACCAGCAAAGAAAAAAGGAGTTCCGGACTACCTGGTGCACCCTGAGCGCTGGACCCGCTACAGTCTGGAAGAAGTGACAATGACCTGCGACAAGGGCAACAGAAGGGTAGCTCACAACTTCCTCTCTAGTCTGCAGCAGAGGAAAGAGCTGCAGGAGAGTGGGAGTGATTCCTCCTGTGACATCCAGCAGAAGATTATCTTCTCCAGACCCAGCGGGCTGCTGATTGAACAACCTGCTGAACAGCTGTCAGCTGTTGGAGGCAAAGAGGAGACACACCTTAGTCATCTGGAGGAGGATGACGAGGATGAAGAGGGCATGGAGAAAGCCAGAAACCAGAGTGTAGAAAAAGCTGAGGAAAGGGCAAGAGATGAAGAAAAAGACATGAGGGGAGTTTTGGATCGACCAGAGGAGAAGAAACCggtgcaaaaacaaaaagaggaggaagaggccaACCCCGCCTTTACCTCCTTCAGGAAGACCAAGCGTAACAACTACAGGAAAAGCTCAGGGCGAGATGATAACTAACCACGACACAGCTCTTTGCTGCCTCATCACTTTGTCAAAATAGTACAAACCGCATATGTAAAAAACATGTTAAGTAAAAAACATTGTTGTCCATTTAAATGTGCTGACTTTACTGTACTCAGTCCAAAGCCGAGCACAGCGCAAGCGGGAGGATTTTGGATTGAGCCCAGAGCAGATTTTTCAAATGTTGGAGTGTCTCCTTATCACCCACTCCATCCCGCTCCAATTTTGCTGCAGTACTGCTCACACCACGAGTTCGAAGCATCCCCAAGCCCGTCTTCGTGTTACTGCAGCATATGCAGATGAACGGTGCCCGTCCGCCCTCCCTCCAAATGCCGCCAGTGCCTGTCATACGGTGGACTTTTTGCTGGAGGAGCTCCAGGCATTAAGGGAAGGTGGGCTCCGTTCATCTAATAAATACAATGcagcttttttccttttttggagCGAGTGGTTGAGCGATTTGAGTAAAGCGAGGTGAAATCTGAGTGGAGCGCAGAGCAATACTGAGCAAAGTGGCCGGGAGCGGCTTTGAGCGAGGAGTGGAAATTCTCACTGCTCCAATGATGCTCTATACTCAACCAAACCTCAAACTGATGAAGAGCAATTAAACAGCAGGCTCAGATGCAGTGTTTTGCTGACCCCTGTCCCACACCTAACTTCACCGATGGTTATGATTGGAAATGTGTTCTGCTGCACCTGTAACAACACCAAATAATGAACTATAGAATAAACTGTTAGTTTATCTGTTCTTTTGTTAGCATGCAAGCTAACTAGCTTACCCCACTGTGAAGTAAGCTAGTTTTCATTTCAGGTGGCAACATCAACAGCTAAAAGTCAGCTAAAAGTGAGAAGCTGCTTCTGGAACATCTAAGACCCGTTGTTTGAAAATGACTGAATTGTGATGGTAAATCTGCtgcttttattgtattgtaaatGTGTTGATTGACAGTCTAGTAACAATAACTAAGGGGTAGCAAGGCTGAGTAATTCCAAATCAGCCTGAAAGACAAACGTGAAAAcactttcttttaaaaataaataaaagaatcaACATGAGGGCAGGAGTGTTAAGTCCTGTTTACACTCAAGGAATCTAGAAGTTTCTTTGTTTACACTCAGCTGGTCAAACTGAGGAGGGAAATTAGAACTAGTGTAGACATTTAAAGCTGGTCTTTATCCAGAtttgatttacattttttgtagcATGTTATGTATTTTGGTATTTCTCAATTCtcaatcttaaataaaaatattgatttgtattattta
>XM_039795097.1
TAAAGCAgatacagaagaagaagaagaagaagaagaagaagaagaggaagaagaggaagaggaagaggaagaggaagaggaagagttTGGTTGTGGAAAGCAAGAACAGTGAGGCAAACTGTGATTGATCAACAACAGTGAGTCTGCAGACCAACAAAGACAACATGGAcgctacaacagcagcacaaacatgGTTATTGATTTAGCCGACCTGCTGATTCTTGTTAAGATGTGTGATCAGAAAAATTGTGGTGACCAAGGTGAGATGTTAAACACTGATGATGTGGACGAGCTGTCGGCCAGTGATGAATCTGAGCCTGAAGAACGACCAAGCATTGCTCCCTTTGACCCAGAGCTgaacgatgatgatgatgatgatgatgatgatgatgattatcgTGGAGAGGTTGAGATCTCTGCTCTAGCTGGACACCGAGCTCAGAGTTCCTTCAGTCTGAGAGGAGGGAGCTCAGCTTTCTCAACCCGTAGCCACAACATCTTTGAATGCCTGGACAGCGTTGCCCGGCCAACCACCTCCTCTCTGAGCCACGATAACGTTACTGACGGAGTATTTGCTCGGCCTCTGCCTCCACATCCCAGCAGAAAGACAAGTCAGCCTCTGGCCAACTGCCCCACACCAGCAAAGAAAAAAGGAGTTCCGGACTACCTGGTGCACCCTGAGCGCTGGACCCGCTACAGTCTGGAAGAAGTGACAATGACCTGCGACAAGGGCAACAGAAGGGTAGCTCACAACTTCCTCTCTAGTCTGCAGCAGAGGAAAGAGCTGCAGGAGAGTGGGAGTGATTCCTCCTGTGACATCCAGCAGAAGATTATCTTCTCCAGACCCAGCGGGCTGCTGATTGAACAACCTGCTGAACAGCTGTCAGCTGTTGGAGGCAAAGAGGAGACACACCTTAGTCATCTGGAGGAGGATGACGAGGATGAAGAGGGCATGGAGAAAGCCAGAAACCAGAGTGTAGAAAAAGCTGAGGAAAGGGCAAGAGATGAAGAAAAAGACATGAGGGGAGTTTTGGATCGACCAGAGGAGAAGAAACCggtgcaaaaacaaaaagaggaggaagaggccaACCCCGCCTTTACCTCCTTCAGGAAGACCAAGCGTAACAACTACAGGAAAAGCTCAGGGCGAGATGATAACTAACCACGACACAGCTCTTTGCTGCCTCATCACTTTGTCAAAATAGTACAAACCGCATATGTAAAAAACATGTTAAGTAAAAAACATTGTTGTCCATTTAAATGTGCTGACTTTACTGTACTCAGTCCAAAGCCGAGCACAGCGCAAGCGGGAGGATTTTGGATTGAGCCCAGAGCAGATTTTTCAAATGTTGGAGTGTCTCCTTATCACCCACTCCATCCCGCTCCAATTTTGCTGCAGTACTGCTCACACCACGAGTTCGAAGCATCCCCAAGCCCGTCTTCGTGTTACTGCAGCATATGCAGATGAACGGTGCCCGTCCGCCCTCCCTCCAAATGCCGCCAGTGCCTGTCATACGGTGGACTTTTTGCTGGAGGAGCTCCAGGCATTAAGGGAAGGTGGGCTCCGTTCATCTAATAAATACAATGcagcttttttccttttttggagCGAGTGGTTGAGCGATTTGAGTAAAGCGAGGTGAAATCTGAGTGGAGCGCAGAGCAATACTGAGCAAAGTGGCCGGGAGCGGCTTTGAGCGAGGAGTGGAAATTCTCACTGCTCCAATGATGCTCTATACTCAACCAAACCTCAAACTGATGAAGAGCAATTAAACAGCAGGCTCAGATGCAGTGTTTTGCTGACCCCTGTCCCACACCTAACTTCACCGATGGTTATGATTGGAAATGTGTTCTGCTGCACCTGTAACAACACCAAATAATGAACTATAGAATAAACTGTTAGTTTATCTGTTCTTTTGTTAGCATGCAAGCTAACTAGCTTACCCCACTGTGAAGTAAGCTAGTTTTCATTTCAGGTGGCAACATCAACAGCTAAAAGTCAGCTAAAAGTGAGAAGCTGCTTCTGGAACATCTAAGACCCGTTGTTTGAAAATGACTGAATTGTGATGGTAAATCTGCtgcttttattgtattgtaaatGTGTTGATTGACAGTCTAGTAACAATAACTAAGGGGTAGCAAGGCTGAGTAATTCCAAATCAGCCTGAAAGACAAACGTGAAAAcactttcttttaaaaataaataaaagaatcaACATGAGGGCAGGAGTGTTAAGTCCTGTTTACACTCAAGGAATCTAGAAGTTTCTTTGTTTACACTCAGCTGGTCAAACTGAGGAGGGAAATTAGAACTAGTGTAGACATTTAAAGCTGGTCTTTATCCAGAtttgatttacattttttgtagcATGTTATGTATTTTGGTATTTCTCAATTCtcaatcttaaataaaaatattgatttgtatta
>XM_039795098.1
agaagaagaagaagaagaagaagaagaagaagaggaagaagaggaagaggaagaggaagaggaagaggaagagttTGGTTGTGGAAAGCAAGAACAGTGAGGCAAACTGTGGTAAATaactgaaatATTGATCAACAACAGTGAGTCTGCAGACCAACAAAGACAACATGGAcgctacaacagcagcacaaacatgGTTATTGATTTAGCCGACCTGCTGATTCTTGTTAAGATGTGTGATCAGAAAAATTGTGGTGACCAAGGTGAGATGTTAAACACTGATGATGTGGACGAGCTGTCGGCCAGTGATGAATCTGAGCCTGAAGAACGACCAAGCATTGCTCCCTTTGACCCAGAGCTgaacgatgatgatgatgatgatgatgatgatgatgattatcgTGGAGAGGTTGAGATCTCTGCTCTAGCTGGACACCGAGCTCAGAGTTCCTTCAGTCTGAGAGGAGGGAGCTCAGCTTTCTCAACCCGTAGCCACAACATCTTTGAATGCCTGGACAGCGTTGCCCGGCCAACCACCTCCTCTCTGAGCCACGATAACGTTACTGACGGAGTATTTGCTCGGCCTCTGCCTCCACATCCCAGCAGAAAGACAAGTCAGCCTCTGGCCAACTGCCCCACACCAGCAAAGAAAAAAGGAGTTCCGGACTACCTGGTGCACCCTGAGCGCTGGACCCGCTACAGTCTGGAAGAAGTGACAATGACCTGCGACAAGGGCAACAGAAGGGTAGCTCACAACTTCCTCTCTAGTCTGCAGCAGAGGAAAGAGCTGCAGGAGAGTGGGAGTGATTCCTCCTGTGACATCCAGCAGAAGATTATCTTCTCCAGACCCAGCGGGCTGCTGATTGAACAACCTGCTGAACAGCTGTCAGCTGTTGGAGGCAAAGAGGAGACACACCTTAGTCATCTGGAGGAGGATGACGAGGATGAAGAGGGCATGGAGAAAGCCAGAAACCAGAGTGTAGAAAAAGCTGAGGAAAGGGCAAGAGATGAAGAAAAAGACATGAGGGGAGTTTTGGATCGACCAGAGGAGAAGAAACCggtgcaaaaacaaaaagaggaggaagaggccaACCCCGCCTTTACCTCCTTCAGGAAGACCAAGCGTAACAACTACAGGAAAAGCTCAGGGCGAGATGATAACTAACCACGACACAGCTCTTTGCTGCCTCATCACTTTGTCAAAATAGTACAAACCGCATATGTAAAAAACATGTTAAGTAAAAAACATTGTTGTCCATTTAAATGTGCTGACTTTACTGTACTCAGTCCAAAGCCGAGCACAGCGCAAGCGGGAGGATTTTGGATTGAGCCCAGAGCAGATTTTTCAAATGTTGGAGTGTCTCCTTATCACCCACTCCATCCCGCTCCAATTTTGCTGCAGTACTGCTCACACCACGAGTTCGAAGCATCCCCAAGCCCGTCTTCGTGTTACTGCAGCATATGCAGATGAACGGTGCCCGTCCGCCCTCCCTCCAAATGCCGCCAGTGCCTGTCATACGGTGGACTTTTTGCTGGAGGAGCTCCAGGCATTAAGGGAAGGTGGGCTCCGTTCATCTAATAAATACAATGcagcttttttccttttttggagCGAGTGGTTGAGCGATTTGAGTAAAGCGAGGTGAAATCTGAGTGGAGCGCAGAGCAATACTGAGCAAAGTGGCCGGGAGCGGCTTTGAGCGAGGAGTGGAAATTCTCACTGCTCCAATGATGCTCTATACTCAACCAAACCTCAAACTGATGAAGAGCAATTAAACAGCAGGCTCAGATGCAGTGTTTTGCTGACCCCTGTCCCACACCTAACTTCACCGATGGTTATGATTGGAAATGTGTTCTGCTGCACCTGTAACAACACCAAATAATGAACTATAGAATAAACTGTTAGTTTATCTGTTCTTTTGTTAGCATGCAAGCTAACTAGCTTACCCCACTGTGAAGTAAGCTAGTTTTCATTTCAGGTGGCAACATCAACAGCTAAAAGTCAGCTAAAAGTGAGAAGCTGCTTCTGGAACATCTAAGACCCGTTGTTTGAAAATGACTGAATTGTGATGGTAAATCTGCtgcttttattgtattgtaaatGTGTTGATTGACAGTCTAGTAACAATAACTAAGGGGTAGCAAGGCTGAGTAATTCCAAATCAGCCTGAAAGACAAACGTGAAAAcactttcttttaaaaataaataaaagaatcaACATGAGGGCAGGAGTGTTAAGTCCTGTTTACACTCAAGGAATCTAGAAGTTTCTTTGTTTACACTCAGCTGGTCAAACTGAGGAGGGAAATTAGAACTAGTGTAGACATTTAAAGCTGGTCTTTATCCAGAtttgatttacattttttgtagcATGTTATGTATTTTGGTATTTCTCAATTCtcaatcttaaataaaaatattgatttgtatta

Function

NR:

description
PREDICTED: protein TSSC4-like

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795096.1 True 2526 mRNA 0.45 4 10766173 10789770
XM_039795097.1 False 2430 mRNA 0.45 3 10766177 10789768
XM_039795098.1 False 2433 mRNA 0.45 3 10766177 10789756

Neighbor

gene id symbol gene type direction distance location
LOC120555515 NA coding downstream 16007 10745861 ~ 10750166 (-)
ano9b ano9,LOC103369658,LOC100691858,LOC102197938 coding downstream 34272 10640938 ~ 10731901 (-)
snrpa1 snrpa1 coding downstream 473249 10259231 ~ 10292924 (-)
zgc:113274 NA coding downstream 520787 10244124 ~ 10245386 (-)
selenos NA coding downstream 524946 10233464 ~ 10241227 (-)
LOC120555500 LOC107373152,LOC106943100,LOC106904307 coding upstream 417770 11207540 ~ 11220942 (-)
LOC120556010 tollip coding upstream 455982 11245752 ~ 11291530 (-)
LOC120555675 NA coding upstream 593730 11383500 ~ 11384371 (-)
celf1 celf1,LOC106561939,LOC106531342,LOC106587097 coding upstream 597907 11387677 ~ 11463360 (-)
c3h16orf87 LOC104939617,LOC103369653,LOC101078579,LOC101483362,LOC100690510 coding upstream 784263 11574033 ~ 11599622 (-)
G26585 NA non-coding downstream 31235 10734726 ~ 10734938 (-)
G26584 NA non-coding downstream 32310 10733351 ~ 10733863 (-)
G26551 NA non-coding downstream 146312 10619661 ~ 10619861 (-)
G26550 NA non-coding downstream 146532 10619430 ~ 10619641 (-)
G26525 NA non-coding downstream 347357 10418470 ~ 10418816 (-)
LOC120556132 shcbp1,LOC102795229 non-coding upstream 71283 10861053 ~ 10867598 (-)
G26633 NA non-coding upstream 88226 10877996 ~ 10878332 (-)
G26635 NA non-coding upstream 89211 10878981 ~ 10879313 (-)
LOC120555827 NA non-coding upstream 165966 10955736 ~ 10956607 (-)
G26675 NA non-coding upstream 216403 11006173 ~ 11006595 (-)
G26298 NA other downstream 1469427 9295068 ~ 9296746 (-)
LOC120555589 cemip other downstream 1787029 8759601 ~ 8979144 (-)
tlnrd1 mesdc1 other downstream 2007365 8733419 ~ 8758808 (-)
il16 LOC102796330 other downstream 2068551 8630608 ~ 8697622 (-)
LOC120555934 NA other downstream 2269538 8494353 ~ 8496635 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other upstream 686736 11476506 ~ 11510300 (-)
LOC120555651 NA other upstream 853461 11643231 ~ 11669269 (-)
G26891 NA other upstream 1170931 11960701 ~ 11961772 (-)
G26924 LOC108281047 other upstream 1514769 12304539 ~ 12304824 (-)
G27075 LOC104939823,LOC100707594 other upstream 2280226 13069996 ~ 13095766 (-)

Expression


Co-expression Network