LOC120555911 (LOC102783822,LOC103462246,LOC106925612,LOC102294465)


Basic Information

Item Value
gene id LOC120555911
gene name LOC102783822,LOC103462246,LOC106925612,LOC102294465
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4163676 ~ 4254074 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795101.1
ATGTGTCACAGTCTTTCCTGGCTGACCACCGAGGACCACTCTTCCTGTGAAGTGTTGGGCGTTACACCCAACACTGACAGACACCTGAACATGAGCCAGGTGCTCCAGCTCGGCGGTGTGAACGAGGACATCCCCTACATCTACCCTCAGCTTCAGCACAAACACTTCACCGGCTGCATCCGCAACCTCATCGTGGACAGCAAGCTGTATGATCTGGGCTCCCCGGCCGACTCGCAGTCCAGCTCTCCAGGCTGCCTGACCACCGATAGCAGCTGTGTCAACATGGGCTATCCGTCCTGTGGCCACCGGGGTCGCTGTCACGGAGAGTGGGGCTCCTTTAGCTGCCAGTGTGTTCCGGGATACACGGGACACCAGTGTGAAGAGGAGGTCCCAGAGTATTCCTTTGAAGGACACAGTCATGCGCACTTCCAGCTGGCGTCCCCTCTGCCGGCCCGGAGGACATGGGTTCAAGCCCTGGTTCGAACCCGCAAACACAGCAGCATCATCCTAAACCTGATCTCGAAGGAGCAGAGTGAATACCTACGGCTAGAGATCTTCCAGGGCCTCCTCTGCGTTTTCTACAACCTCGGGGATGGGGACTACAACCTAACCCTACCCACCTATCGCCTCGACAATGGTGAATGGCATGAGGTCTTCCTGGATCGGCATGACAACGAGATGATGCTGCGACTGGACGGTGGCGGAGGCCAGCGGGAGATCACAGGGTCACGAGGCCGAAGCCGAGAAATCATCATCGACCCCACAGTGGTGATGCTGGGGAACACCTTCCCCTCTGGAACCAACAAGAGCTTCCAGGGCTGCATGAGGGACATACGCCTCAATGGTCGCTACATGCCACTGGACAGCCAGCCGCGAGATGGGGTTTCCCGCGTCAGCATACAAGGCCTCTCCCTTGGGTGCTCATCTGATTCCTGCAAAAGGAACCAATGTAGTCCCCCCTTCACCTGTGTTGACCTGTGGAGAGTGCACGAATGCagATGTCCTCCTGGCCACATGATCCGTGTGAACGGGACCAGAAAGTCCTGTGTCTACACCCTCTGTGCTACGCGGCCTTGCCACCGGGGGACCTGTGTGGCCCAGTCACCCTCCAAATTCACCTGCCACTGCCCAGAGGGTTACAGAGGACACCACTGTGAGACAACATTGGCCATCTATCGGGAGGACGTGGGCCTGAGCTTCAGCTCCCTCTTTGCCATCTGTATCTGCTTCATGGCCTTACTAGtgctgctgctgggcATTTTCCTCTACACTCGCTGGAGGAGCTACAAAGGGCTGAAAGAAGGCGTTTACCACGTCTCCGCCCACCACGACGGCTGGGAGGACATCCGAGAGAACGTCCTCAACTATGACGAGGAGGGGGGCGGGGAGGAGGACCAGaatGCCTACGACATGGCGGAGCTGCAGAAGTCCCTCCAGCCGAGCCCGGCCCAGTCGGTCCAGTACTGCCGCTCCAGGGCCCTGCACCaccacccccctcctccccccctccaccaccaccaccacctcctccaccaGGCGCCCCCGGCCCCGCCCTCTGCCCAGCAGCTGGACCCCCTCAGCCGGACAGCCAGCTCCAGCACCCTGCCCCCGTCGGCAGCTTCCACCTCCTCCACGGCCACCACCACCGCCAGCCTCCGCCGGGACGTCCCCCCCACCAGGCTGCcggcccagggccaggcccgCCCCTCCCAGCTGGCGCGCCGCTCCCTGTCCTTCTCCAGCCAGGACCTGGCCCGCTACCTGTGCGAGATCATCCGCGACGCCGACCAGCACCCGGACACGGGGCCCTTCGACTCGCTGCAGGTCTTCTCCACCGAGGGAGGGGGCTCGCCCGCCGGCTCCCTCAGCTCCTTCAGCTCGGCGGGGCTGGACGCGGGGAACGGCGGGGacgggggaggaggggagggcaGGAGGGAGGAGACGCTCGGGGAGTGGGGCCCCCGCTTTGAGAAGCTGCGGGCGCTGTACGAGCAAGCCGAGGCCAGCGACCTCTGAGCTCGGAGCGCAAActgacaggacaggacaggacccCGATAACGGGCCGTCCCAAACACAATCAATTAGCAGACGCTTAGCGACGGCtgaggtgggggtggggggggaaccTGCGAGAGACTGACTGACAGAGAGATCGCTCCACACCCCCCACTCGCCGACAACTGTCGTGGGAGTCGTAGGCCCGTGTGTTGTATTTACTGGATGATGAGccgccccccgccccccccccgccccccccgtCAGTCACCGTGGCGGCCTCACAGACAGATGAAAGTGTCCCCGTGAAAAGAGCCCGTCACTCTGCGCCCCCGCTACCTTGGAGGAAAATGTATTTTCGCGGGAGCAGACATTATCAGACGTGCCAGTCAGGTTCTGTAGCCGGGCTACTCATCATGATGGAGCTTAAGCTTCACTGTCAGGAAGATCTGTTCCAGTCGCAGCCACTaaacccacccccccaccccacaacacacacacacacacacacacaatttcctCTATTTTATAACACTCATTGCGAGCTGCTATGGATGAGTGTCAGCTGAAGGCCTCAAATATGAAATGGAAATGTTTTGGCCgggttctttcttttttttccataccCGAGCAGAGCGTTGCCACGTTAAATGTATTTTAGCACCTTGCCGCTGAATGAAATCTTCGTGAATGAACAAAGGACTCTTACACATACTGTGCTCTGCGCCGTTTTACGGGGATGCGACGGTGAAGATGAATGGGATCATACTGAGTAGCCCATTCAATACGCAGTTTGGATTTTGACTCTAAAGTGGACACGTTGTGTTCTCGCTGCCTGGCTGTACACAGCTTCTATCAATGTTTgtaaaggagaaagaaaaaaaaatactaagtGCTTGGACCAGCACTGGGTTGCAGGGTGAGATTCTAATTCTTTTCTTCTGGTAATGTGTCCTTCACTGGGTTGAGTAATTACGTATTGGTTGGGTGTTTTCAAGTTTCAGTGCTCCGTGGGTTGTAAGACGTCGAGCTTTCTAGTTCCTGCTGTGCCCTCATCTTCACGCGATTTTTCCTATTCTCATTTGCGCTCCTCCGCCGCCGCGCGTCTCTCCTCCTCACCCGAGGGACGGCGCGCAGAAATCCAAACAGCTTTGTTGCAAAGAAGTGGGAGCGGACGTGCGAACTGCGGGAGGGGGGAAATGCTTGCTCTGTTGCTCTGTTCCGCGTAACGCTGTTCCTCAGGCATACCAAATGTGGCGGGCTGCAGGAGACTATTTTAACTGACGATTGCACGGTAGAATACAAACAGCTTTCCAAGGTGACCGCTCAATAAATACAActggaaagaggaaaaggaggacaTTCACACTGATAATTCATGTATATATAATTATTCGGAGCTGTTATAGGTATACGCAATTCTCACACAGATAACTATTGTCCCTCGCTAAATTACCACATACTGTTGATTGTAGGAAAGTGGACTCAGTCTGCAGGGAAATAATAAGTCTGCAGTCATTTTCCCAGCTGTGAATTGTCAGCACAGTGGCAAGTGTTCCTCTTGTTTGGCTTCCTTTTCACATCAGGTTGATGGATCTTTTCAACttgacacaaaaaaacagacttCCTGCTGTTGTGGAACGGGCGAGAACAATTTGTggtaacagaaaaataaaaaataaaaaacgaagGCAAGGAAAAGGCCAATATAAAACAGTGAAAAGTGGAGAGGAGCGCCGAGTCTGAAAAGGAACCTTCGATAAGAGAGATGATCACAGGGTAGAGGGCTGAATCAGAGAGCAAATGAGCAAGGGAGGCAGAGAGGAACCATCTTCAGATGCCTGGCTGAGGAGTGTGGTGAAATGTGCCAGCAGTGCACCATGGGGCCGCTGTAGAGGGGGactatgtggaa

Function

NR:

description
PREDICTED: neural-cadherin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795101.1 True 3907 mRNA 0.56 10 4163676 4254074

Neighbor

gene id symbol gene type direction distance location
LOC120556182 LOC101467318,LOC102294465,LOC102206054,LOC108237897 coding upstream 11612 3873032 ~ 4152064 (+)
mtss1lb LOC102779958,LOC108237900,LOC103462242,LOC103355402 coding upstream 439533 3623634 ~ 3724143 (+)
LOC120555909 NA coding upstream 741270 3421203 ~ 3422406 (+)
slc7a6 slc7a6,LOC104919890,LOC103355407,LOC102782072 coding upstream 858188 3280076 ~ 3305488 (+)
adgrg1 NA coding upstream 890498 3250608 ~ 3273178 (+)
LOC120555425 NA coding downstream 78991 4333065 ~ 4341288 (+)
zgc:162297 LOC103355515 coding downstream 1388209 5642283 ~ 5654255 (+)
LOC120555666 LOC104921432,LOC104957830,LOC107086796,LOC103149206,LOC102794467,LOC102201791,LOC101480916,LOC102288651 coding downstream 1405406 5659480 ~ 5672023 (+)
LOC120556426 LOC102314239,LOC100696141,LOC102210596,LOC101484460,LOC106959120,LOC106925763,LOC103462259 coding downstream 1479216 5733290 ~ 5758249 (+)
LOC120556427 cd81,LOC103358449,LOC103379030 coding downstream 1510469 5764543 ~ 5804822 (+)
G25436 NA non-coding upstream 347528 3815837 ~ 3816148 (+)
G25418 NA non-coding upstream 549160 3614246 ~ 3614516 (+)
G25380 NA non-coding upstream 700153 3463057 ~ 3463523 (+)
LOC120555487 NA non-coding upstream 749141 3413012 ~ 3414535 (+)
LOC120555486 NA non-coding upstream 773951 3388522 ~ 3389725 (+)
G25486 NA non-coding downstream 91564 4345638 ~ 4348769 (+)
G25498 NA non-coding downstream 192521 4446595 ~ 4446914 (+)
G25541 NA non-coding downstream 428050 4682124 ~ 4682470 (+)
G25567 NA non-coding downstream 636653 4890727 ~ 4890996 (+)
G25593 NA non-coding downstream 1376590 5630664 ~ 5633030 (+)
G25431 NA other upstream 378134 3784933 ~ 3785542 (+)
mmp15b mmp15,LOC104948393 other upstream 645590 3481297 ~ 3518086 (+)
adamts18 adamts18 other upstream 1851519 2240414 ~ 2312157 (+)
G25204 NA other upstream 2080357 2081958 ~ 2083319 (+)
G25173 dnaja2,LOC106524269 other upstream 2320865 1839333 ~ 1842811 (+)
G25512 NA other downstream 316299 4570373 ~ 4575645 (+)
tshz3b tshz3 other downstream 539741 4793815 ~ 4837285 (+)
G25708 NA other downstream 1780135 6034209 ~ 6035193 (+)
LOC120555541 NA other downstream 2008336 6262410 ~ 6289776 (+)
G25743 NA other downstream 2032974 6287048 ~ 6288077 (+)

Expression


Co-expression Network