vps33b (vps33b)


Basic Information

Item Value
gene id vps33b
gene name vps33b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40974790 ~ 40998777 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795108.1
GTTTCACACCATGGATTATCTACCAGTGTGAACCAATGGCGTGAACGAAGGTGAAATGCACCAGTCCGTTCCTTTTCGTGTCCGGGGGGAAACAGCAGATGATGATGGGATCAATTCCGCTTATTTAGCTAAGGAAGCAGCCCAACATGGCTCACAGTGCCAGGACAGATTGCCCGGAGCTCCCGGACTTCTTTCTTCTCAAGAGGCTGGCCAGGGATCAGCTCATCTACCTGCTGGAACAGCTGCCGGGGAAGAAGGACCTCTTCATCGAGGCAGACTTGATGAGCCCGCTGGATCGTATTGCTAATGTGTCAACGCTAAAGcaacATGAGGTCGACAAACTCTACAAAGTGGAATACAAACCTATTGTCAGCACCTCAGATCAGCTCTGTTTTCTGATCCGGCCTAGAATACAAACTGTCAAATGGATATGCGACGTGGCCAATGCAGACAAGGCAGCAGGAAGATTTAGACGATACAAGATCATCTTTACCCCTCAGAAGTTTTATGCGTGTGACGCGGTGCTGGAGGAGCAGGGGATCATTGGCGATGTGACCACTGATGAGTGGTCTTTTTATCTTCTTCCTCTTGACGATGACATCATCAGCCTGGAGCTGCCCGAGTTCTTTCGAGACAACTTCCTGgcGGGGGACCAGCGCTGGGTGAGGACTGCCGGCAGCGCGCTGCACCTCCTCCACTCCCTCTACGGCCCCTTCTCTAAGGTTTATGGGATTGGACGATGTTCCAAGATGGCGTACGAGTCGTGGAGGGAGCAGGTGGAAGAAGGAGAACAAAAAGCTCGTCAAGCTGAAATAGGAAAGGTTTTTCTCATTGACCGAGACGTGGACTTTGTCACTCCTCTGTGCTCGCAAGTTGTCTACGAGGGACTCGTGGACGACATATTTAAAATCAAATGTGCGTGTGTGGAGTTTGGACCTGATGTGACGTCCTCTGACAAAAGTATTAAAGTCATGCTGAACTCTCAGGATAGGGTCTTCAATGAAATCCGAAACGAGCATTTCTCCAACGTCTTTGGCTTCCTCAGTCAGAAAGCCAGGAATCTCCAGACTTCATACGATAAGCGTCGGGGGATGGACATAAAGCAGATGAAGACGTTTGTGTCGGAGGAACTAAAAGGCTTAAAACAGGAACACCGGCTGCTTAGCCTACACATCGGTGCCTgtgaatcgataatgaaaaagaaaacaaagcaggATTTTCAGGAGCTGTTGAAGACAGAACACTCTTTACTTGAAGGATTTGAAATCCGTGAAAGCATTTCTTATATAGAGGAGCACATCAACAGACAGgtCTCAATGATCGAAAGTCTGAGGCTGCTTTGTCTTCTGTCTATCACAGAAAATGGACTTCTGCCAAAAGATTACCGCTCATTAAAAGCACAGTATCTGCAGAGTTATGGAGTGGACCACCTGCTCACATTCGCCAACCTGAGGCAGTTGGGTCTGCTGGTGGAGCAGCAGCCGGGGGAAACGCTGACGGTTATGGAGAGCAAGGTCGGCAAACTGGTCAACGACAGAACTGCAGgAAAGCTGAGTGACGCCTTCTCTTCTCTTGCAAAGAAGAGCAACTTCAGAGCCCTGAGCAGAAAGCTCAACCTGGTGCCAAAGTCAGATGAAGAATATGACCTGCGTGTCCCACGAGACATGGCCTACATCTTCAGCGGCGCCTACGTCCCTCTGAGCTGCAAACTCATCGAGCAGGTGTTGGAGCGAGACGGTTGGACGGGGCTTGAAGAAGTCACCAGGCTGCTAAATGGACATGaatttgctgttacagGCAGCACCGGAGCGGACTCAAAAGCAAAGAACGACGCTCAGCGCATCATCCTCGTCATGTTCCTCGGCGGCTGCACCTTTTCGGAGATTTCCGCTCTACGTTTCCTCGGCAGAGAGCGAGGTTGTAAATTCATTGTGGTAACAACTGCGATTACAAACAGTTCGAGACTCATCGAGGCCTTGCTAGACAACATTGTATGAAGCCTGTCACCACTCCCTGATGGACAGACACGGAGACATTCCTGCAGCCACTTGTCATGCGTTCCTTCCAGCACGCTGGCGTTACCGATGGGAAATGTTTCCGCTCTGTGCCTGACAACGAAAGAACTGTAAAGATGTATAAAgtgaataaatgtttttaacGCG
>XM_039795109.1
GTTCACTACACTTACAAACGAGGCCGCTACTATTTAGGAGACAGGACGCATGTACGGTTTCATGTTTCACACCATGGATTATCTACCAGTGTGAACCAATGGCGTGAACGAAGCCCAACATGGCTCACAGTGCCAGGACAGATTGCCCGGAGCTCCCGGACTTCTTTCTTCTCAAGAGGCTGGCCAGGGATCAGCTCATCTACCTGCTGGAACAGCTGCCGGGGAAGAAGGACCTCTTCATCGAGGCAGACTTGATGAGCCCGCTGGATCGTATTGCTAATGTGTCAACGCTAAAGcaacATGAGGTCGACAAACTCTACAAAGTGGAATACAAACCTATTGTCAGCACCTCAGATCAGCTCTGTTTTCTGATCCGGCCTAGAATACAAACTGTCAAATGGATATGCGACGTGGCCAATGCAGACAAGGCAGCAGGAAGATTTAGACGATACAAGATCATCTTTACCCCTCAGAAGTTTTATGCGTGTGACGCGGTGCTGGAGGAGCAGGGGATCATTGGCGATGTGACCACTGATGAGTGGTCTTTTTATCTTCTTCCTCTTGACGATGACATCATCAGCCTGGAGCTGCCCGAGTTCTTTCGAGACAACTTCCTGgcGGGGGACCAGCGCTGGGTGAGGACTGCCGGCAGCGCGCTGCACCTCCTCCACTCCCTCTACGGCCCCTTCTCTAAGGTTTATGGGATTGGACGATGTTCCAAGATGGCGTACGAGTCGTGGAGGGAGCAGGTGGAAGAAGGAGAACAAAAAGCTCGTCAAGCTGAAATAGGAAAGGTTTTTCTCATTGACCGAGACGTGGACTTTGTCACTCCTCTGTGCTCGCAAGTTGTCTACGAGGGACTCGTGGACGACATATTTAAAATCAAATGTGCGTGTGTGGAGTTTGGACCTGATGTGACGTCCTCTGACAAAAGTATTAAAGTCATGCTGAACTCTCAGGATAGGGTCTTCAATGAAATCCGAAACGAGCATTTCTCCAACGTCTTTGGCTTCCTCAGTCAGAAAGCCAGGAATCTCCAGACTTCATACGATAAGCGTCGGGGGATGGACATAAAGCAGATGAAGACGTTTGTGTCGGAGGAACTAAAAGGCTTAAAACAGGAACACCGGCTGCTTAGCCTACACATCGGTGCCTgtgaatcgataatgaaaaagaaaacaaagcaggATTTTCAGGAGCTGTTGAAGACAGAACACTCTTTACTTGAAGGATTTGAAATCCGTGAAAGCATTTCTTATATAGAGGAGCACATCAACAGACAGgtCTCAATGATCGAAAGTCTGAGGCTGCTTTGTCTTCTGTCTATCACAGAAAATGGACTTCTGCCAAAAGATTACCGCTCATTAAAAGCACAGTATCTGCAGAGTTATGGAGTGGACCACCTGCTCACATTCGCCAACCTGAGGCAGTTGGGTCTGCTGGTGGAGCAGCAGCCGGGGGAAACGCTGACGGTTATGGAGAGCAAGGTCGGCAAACTGGTCAACGACAGAACTGCAGgAAAGCTGAGTGACGCCTTCTCTTCTCTTGCAAAGAAGAGCAACTTCAGAGCCCTGAGCAGAAAGCTCAACCTGGTGCCAAAGTCAGATGAAGAATATGACCTGCGTGTCCCACGAGACATGGCCTACATCTTCAGCGGCGCCTACGTCCCTCTGAGCTGCAAACTCATCGAGCAGGTGTTGGAGCGAGACGGTTGGACGGGGCTTGAAGAAGTCACCAGGCTGCTAAATGGACATGaatttgctgttacagGCAGCACCGGAGCGGACTCAAAAGCAAAGAACGACGCTCAGCGCATCATCCTCGTCATGTTCCTCGGCGGCTGCACCTTTTCGGAGATTTCCGCTCTACGTTTCCTCGGCAGAGAGCGAGGTTGTAAATTCATTGTGGTAACAACTGCGATTACAAACAGTTCGAGACTCATCGAGGCCTTGCTAGACAACATTGTATGAAGCCTGTCACCACTCCCTGATGGACAGACACGGAGACATTCCTGCAGCCACTTGTCATGCGTTCCTTCCAGCACGCTGGCGTTACCGATGGGAAATGTTTCCGCTCTGTGCCTGACAACGAAAGAACTGTAAAGATGTATAAAgtgaataaatgtttttaacGCG

Function

symbol description
vps33b Acts upstream of or within intrahepatic bile duct development. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of CORVET complex. Predicted to be active in lysosome. Is expressed in gut; liver; and pancreas. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; arthrogryposis, renal dysfunction, and cholestasis 1; cholestasis; and kidney disease. Orthologous to human VPS33B (VPS33B late endosome and lysosome associated).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 33B-like isoform X1

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K23281 VPS33B; vacuolar protein sorting-associated protein 33B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795108.1 True 2162 mRNA 0.50 24 40974790 40998714
XM_039795109.1 False 2135 mRNA 0.50 24 40974790 40998777

Neighbor

gene id symbol gene type direction distance location
prc1b prc1,LOC102796011 coding downstream 1109 40952915 ~ 40973681 (-)
ptpmt1 ptpmt1,LOC102795413 coding downstream 26225 40937815 ~ 40948565 (-)
ndufs3 ndufs3 coding downstream 40234 40929470 ~ 40934556 (-)
LOC120556279 atp6v0d1,LOC103462946,LOC107563463 coding downstream 292433 40672915 ~ 40682357 (-)
foxr1 NA coding downstream 303188 40666272 ~ 40671602 (-)
hypk hypk coding upstream 16692 41015469 ~ 41018907 (-)
adamtsl5 adamtsl5 coding upstream 64263 41063040 ~ 41115545 (-)
crtc3 LOC103367860 coding upstream 147741 41146518 ~ 41191697 (-)
iqgap1 iqgap1 coding upstream 200964 41199741 ~ 41273359 (-)
LOC120555591 cdkn2aip,LOC102799175,LOC108249214 coding upstream 343891 41342668 ~ 41345195 (-)
G33196 NA non-coding downstream 37726 40936841 ~ 40937064 (-)
G33168 NA non-coding downstream 49736 40920334 ~ 40925054 (-)
G33167 c1qtnf4,LOC102794664 non-coding downstream 56206 40918227 ~ 40918584 (-)
G33109 NA non-coding downstream 410859 40562192 ~ 40563931 (-)
G33068 NA non-coding downstream 639843 40331750 ~ 40334947 (-)
G33347 NA non-coding upstream 446752 41445529 ~ 41445742 (-)
G33368 NA non-coding upstream 562055 41560832 ~ 41565475 (-)
G33369 NA non-coding upstream 567438 41566215 ~ 41566420 (-)
G33371 znf408,LOC104941494 non-coding upstream 572225 41571002 ~ 41571236 (-)
G33383 LOC103462981,LOC106924557,LOC102221671,LOC103155220 non-coding upstream 671623 41670400 ~ 41672862 (-)
LOC120556513 NA other downstream 311133 40661364 ~ 40663657 (-)
G33122 NA other downstream 312169 40648676 ~ 40662621 (-)
LOC120556146 NA other downstream 385126 40564241 ~ 40589664 (-)
LOC120556511 LOC102208128,LOC101468289 other downstream 832742 40049624 ~ 40142048 (-)
slc6a5 slc6a5 other downstream 1739044 39205275 ~ 39235746 (-)
sirt3 sirt3 other upstream 758850 41757627 ~ 41764896 (-)
G33711 NA other upstream 1400514 42399291 ~ 42402136 (-)
G33796 NA other upstream 1986446 42985223 ~ 42990770 (-)
G33847 NA other upstream 2215857 43214634 ~ 43214987 (-)
G33914 NA other upstream 2453935 43452712 ~ 43456847 (-)

Expression


Co-expression Network