mtfmt (mtfmt,LOC102776665,LOC102776373)


Basic Information

Item Value
gene id mtfmt
gene name mtfmt,LOC102776665,LOC102776373
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11476506 ~ 11510300 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795126.1
CGAAGAAGAAGACACGACGGAAGTGCAATGGAAAACATGGCGGCGTCCTCTGTTGACACATTTAGGGCAGTTCGATTACAGTCCCAGCCACTTTCCCAGTGTCCGCACTGACACTTTGGACACATCGCCGAAGCCACAGCTGGTGTTGTATGAAGTGTGTGGCAAGACAAGTCTCTAAACATGTTGACCCACTTCCAGCGCTGCTGCCTGCGCTGTTGTATAACGCTGCAGCCAGTGTTGAGGAGGCGGCCTGGCTGTAGATTCATGTCATCATCGGGACCCCCGTGGAGGCTCCTGTTCTTTGGCTCTGATCAGTTCGCTGTGGAATCTCTAAAACTCCTCACATCCAGCAGGATTTCCAGTGAAAGGATAGTGGAGTCCCTTGAAGTTGTTACTTTGTCTGGTAACGTCCCAGTGAAGAGGTTTGCTCAACAGAACCACCTTCCAGTCCACAGCTGGCCCCCTGACAATGTGGACGGACAGTTTGATGTTGGGGTGGTGGTCTCTTTTGGCTGTTTACTCCATGAGAGTCTGATCAACAAGTTTCCAtaCGGAATTTTGAATGTTCACCCCAGCCTGCTGCCTAGGTGGCGAGGACCAGCACCCATCTTCCACACCATCATGCATGGTGACACTGTGACAGGGGTCACAATCATCCAGATCCGCCCTCATAGGTTTGACGTGGGTCCCATTCTCCACCAGGAGCTTCATCAGGTCCCTGAGAACTGTACTGCTGAGGAGCTTGGAGCTTCTCTAGCCACGAAGGGAGCACATCTGCTGATTGATACGCTCATGACACTGCCTGAGAGACTGGCACATAAAAGGGAGCAAAAACAGACAGGTGCAACTTTTGCCCCGAAAATCAATGCATCCATGAGCTGGATAGTGTGGGAGGAACAGACTTGTGACCAAATTGATCGTCTGTATCGTGCCATCGGATCTCGGATACCTTTGAAGACCACATGGATGGGCAGGACAATAAAACTTCTGGATTTTGTAGGAAAATGTCACATTTCATTATTAGATCAAAGACGGAAACTGGTCCCTGGCACATTGAGCTATCAGAAGGAGTCCAACACTCTGGCTGTCTGCTGTAAGGATGGCTGGGTGGGATTCAAGGCAGTGCTGCTGAAAAAAAGGCTGACAGCGGCTGATTTCTTTAATGGCTACCTGCATCAGACAATGCAGAAGAAGACACCCTATCAGACAGCCGAAGCTCTGTTTGTCAGCAGAAAACAAGCAACTGAAGAGCATCAGATGTCAGCGTCGTGATGCAACaacaatttattttttccttaatGTGAACACTGCAGACATGATTTTACCTATTGGAATTTACTGAAGTGAATGTGTTACTCTTGTCTGTTTTAAGAcatctgcatgtacagtatattttctgtatgtgtaCTACACTGCTACAACTATACTAATCATTTATTTGCAATAAATACAATTGATgaaactttta
>XM_039795127.1
CGAAGAAGAAGACACGACGGAAGTGCAATGGAAAACATGGCGGCGTCCTCTGTTGACACATTTAGGGCAGTTCGATTACAGTCCCAGCCACTTTCCCAGTGTCCGCACTGACACTTTGGACACATCGCCGAAGCCACAGCTGGTGTTGTATGAAGTGTGTGGCAAGACAAGTCTCTAAACATGTTGACCCACTTCCAGCGCTGCTGCCTGCGCTGTTGTATAACGCTGCAGCCAGTGTTGAGGAGGCGGCCTGGCTGTAGATTCATGTCATCATCGGGACCCCCGTGGAGGCTCCTGTTCTTTGGCTCTGATCAGTTCGCTGTGGAATCTCTAAAACTCCTCACATCCAGCAGGATTTCCAGTGAAAGGATAGTGGAGTCCCTTGAAGTTGTTACTTTGTCTGGTAACGTCCCAGTGAAGAGGTTTGCTCAACAGAACCACCTTCCAGTCCACAGCTGGCCCCCTGACAATGTGGACGGACAGTTTGATGTTGGGGTGGTGGTCTCTTTTGGCTGTTTACTCCATGAGAGTCTGATCAACAAGTTTCCAtaCGGAATTTTGAATGTTCACCCCAGCCTGCTGCCTAGGTGGCGAGGACCAGCACCCATCTTCCACACCATCATGCATGGTGACACTGTGACAGGGGTCACAATCATCCAGATCCGCCCTCATAGGTTTGACGTGGGTCCCATTCTCCACCAGGAGCTTCATCAGGTCCCTGAGAACTGTACTGCTGAGGAGCTTGGAGCTTCTCTAGCCACGAAGGGAGCACATCTGCTGATTGATACGCTCATGACACTGCCTGAGAGACTGGCACATAAAAGGGAGCAAAAACAGACAGGTGCAACTTTTGCCCCGAAAATCAATGCATCCATGAGCTGGATAGTGTGGGAGGAACAGACTTGTGACCAAATTGATCGTCTGTATCGTGCCATCGGATCTCGGATACCTTTGAAGACCACATGGATGGGCAGGACAATAAAACTTCTGGATTTTGTAGGAAAATGTCACATTTCATTATTAGATCAAAGACGGAAACTGGTCCCTGGCACATTGAGCTATCAGAAGGAGTCCAACACTCTGGCTGTCTGCTGATGGCTGGGTGGGATTCAAGGCAGTGCTGCTGAAAAAAAGGCTGACAGCGGCTGATTTCTTTAATGGCTACCTGCATCAGACAATGCAGAAGAAGACACCCTATCAGACAGCCGAAGCTCTGTTTGTCA
>XM_039795128.1
CCGAAGAAGAAGACACGACGGAAGTGCAATGGAAAACATGGCGGCGTCCTCTGTTGACACATTTAGGGCAGTTCGATTACAGTCCCAGCCACTTTCCCAGTGTCCGCACTGACACTTTGGACACATCGCCGAAGCCACAGCTGGTGTTGTATGAAGTGTGTGGCAAGACAAGTCTCTAAACATGTTGACCCACTTCCAGCGCTGCTGCCTGCGCTGTTGTATAACGCTGCAGCCAGTGTTGAGGAGGCGGCCTGGCTGTAGATTCATGTCATCATCGGGACCCCCGTGGAGGCTCCTGTTCTTTGGCTCTGATCAGTTCGCTGTGGAATCTCTAAAACTCCTCACATCCAGCAGCGGAATTTTGAATGTTCACCCCAGCCTGCTGCCTAGGTGGCGAGGACCAGCACCCATCTTCCACACCATCATGCATGGTGACACTGTGACAGGGGTCACAATCATCCAGATCCGCCCTCATAGGTTTGACGTGGGTCCCATTCTCCACCAGGAGCTTCATCAGGTCCCTGAGAACTGTACTGCTGAGGAGCTTGGAGCTTCTCTAGCCACGAAGGGAGCACATCTGCTGATTGATACGCTCATGACACTGCCTGAGAGACTGGCACATAAAAGGGAGCAAAAACAGACAGGTGCAACTTTTGCCCCGAAAATCAATGCATCCATGAGCTGGATAGTGTGGGAGGAACAGACTTGTGACCAAATTGATCGTCTGTATCGTGCCATCGGATCTCGGATACCTTTGAAGACCACATGGATGGGCAGGACAATAAAACTTCTGGATTTTGTAGGAAAATGTCACATTTCATTATTAGATCAAAGACGGAAACTGGTCCCTGGCACATTGAGCTATCAGAAGGAGTCCAACACTCTGGCTGTCTGCTGTAAGGATGGCTGGGTGGGATTCAAGGCAGTGCTGCTGAAAAAAAGGCTGACAGCGGCTGATTTCTTTAATGGCTACCTGCATCAGACAATGCAGAAGAAGACACCCTATCAGACAGCCGAAGCTCTGTTTGTCAGCAGAAAACAAGCAACTGAAGAGCATCAGATGTCAGCGTCGTGATGCAACaacaatttattttttccttaatGTGAACACTGCAGACATGATTTTACCTATTGGAATTTACTGAAGTGAATGTGTTACTCTTGTCTGTTTTAAGAcatctgcatgtacagtatattttctgtatgtgtaCTACACTGCTACAACTATACTAATCATTTATTTGCAATAAATACAATTGATgaaactttta
>XR_005638773.1
CGAAGAAGAAGACACGACGGAAGTGCAATGGAAAACATGGCGGCGTCCTCTGTTGACACATTTAGGGCAGTTCGATTACAGTCCCAGCCACTTTCCCAGTGTCCGCACTGACACTTTGGACACATCGCCGAAGCCACAGCTGGTGTTGTATGAAGTGTGTGGCAAGACAAGTCTCTAAACATGTTGACCCACTTCCAGCGCTGCTGCCTGCGCTGTTGTATAACGCTGCAGCCAGTGTTGAGGAGGCGGCCTGGCTGTAGATTCATGTCATCATCGGGACCCCCGTGGAGGCTCCTGTTCTTTGGCTCTGATCAGTTCGCTGTGGAATCTCTAAAACTCCTCACATCCAGCAGGATTTCCAGTGAAAGGATAGTGGAGTCCCTTGAAGTTGTTACTTTGTCTGGTAACGTCCCAGTGAAGAGGTTTGCTCAACAGAACCACCTTCCAGTCCACAGCTGGCCCCCTGACAATGTGGACGGACAGTTTGATGTTGGGGTGGTGGTCTCTTTTGGCTGTTTACTCCATGAGAGTCTGATCAACAAGTTTCCAtaCGGAATTTTGAATGTTCACCCCAGCCTGCTGCCTAGGTGGCGAGGACCAGCACCCATCTTCCACACCATCATGCATGGTGACACTGTGACAGGGGTCACAATCATCCAGATCCGCCCTCATAGGTTTGACGTGGGTCCCATTCTCCACCAGGAGCTTCATCAGGTCCCTGAGAACTGTACTGCTGAGGAGCTTGGAGCTTCTCTAGCCACGAAGGGAGCACATCTGCTGATTGATACGCTCATGACACTGCCTGAGAGACTGGCACATAAAAGGGAGCAAAAACAGACAGGTGCAACTTTTGCCCCGAAAATCAATGCATCCATGAGCTGGATAGTGTGGGAGGAACAGACTTGTGACCAAATTGATCGTCTGTATCGTGCCATCGGATCTCGGATACCTTTGAAGACCACATGGATGGGCAGGACAATAAAACTTCTGGATTTTGTAGGAAAATGTCACATTTCATTATTAGATCAAAGACGGAAACTGGTCCCTGGCACATTGAGCTATCAGAAGGAGTCCAACACTCTGGCTGTCTGCTGTAAGGTCTGTTAAACTTTGTTAGCTGTATTTAGTTTACTACTGATAATGACTTAAACCTGCACACCTGTCCCTCTTTACTCCAGCCCCAACACCATGTGAAGCATGAAATCATATAAATTCATttgaatttttgtttttttacatgatGTGTAAATGTCCTGAACAGCAGAATAATTCAGATGTGATAACTTGTGCAAATGTCCCACATATCACTCAAAATAATTTCACAGTAAAGCCTTTTTGACAAGCATGTTCATACTTTAATATATTAAAGCAGGGGTGTCCAAAATTTTAATCCCAGGGGCCAGATggagaaaaacacatttcccttttttttactcatattttattgatttttagtATAAACAATAAAGAACACAGCGCAGCGTCAGTGGGGTACATGTTCTTAGTATTAATACTCAAATGTCTCTGACATCAAAGTTTTTGGTGGTGACTCTGTATTGTGATTGGTATTCTGTCAATTTTTCGCATTTCTTATCATATTTTGCTTGCTGGAGTCTCAATATATACGTCAGTCTTTCCATGTTGAGTATCTCCTCGACTACGTCCAGCCAGTTCCTCAGAGTGGGAGGGTCCTCTCTACACTATTTTCTGGTGATTGCCTTCTTGGCTGCAGCCAGCAGAATTTTAACCAGTATACTCAGGATCACACCAATACACCAAAGGTCGGATCTGTGCAGCATAGTAATATTCTAAGTGGTTTGGATGGCTGGGTGGGATTCAAGGCAGTGCTGCTGAAAAAAAGGCTGACAGCGGCTGATTTCTTTAATGGCTACCTGCATCAGACAATGCAGAAGAAGACACCCTATCAGACAG

Function

symbol description
mtfmt Predicted to enable methionyl-tRNA formyltransferase activity. Predicted to be involved in conversion of methionyl-tRNA to N-formyl-methionyl-tRNA. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 15 and nuclear type mitochondrial complex I deficiency 27. Orthologous to human MTFMT (mitochondrial methionyl-tRNA formyltransferase).

NR:

description
PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA biological_process
GO:0004479 methionyl-tRNA formyltransferase activity molecular_function

KEGG:

id description
K00604 MTFMT, fmt; methionyl-tRNA formyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795126.1 False 1468 mRNA 0.47 9 11476506 11510299
XM_039795127.1 False 1223 mRNA 0.50 9 11476746 11510299
XM_039795128.1 False 1271 mRNA 0.47 8 11476506 11510300
XR_005638773.1 True 1932 transcript 0.45 10 11476764 11510299

Neighbor

gene id symbol gene type direction distance location
celf1 celf1,LOC106561939,LOC106531342,LOC106587097 coding downstream 13146 11387677 ~ 11463360 (-)
LOC120555675 NA coding downstream 92135 11383500 ~ 11384371 (-)
LOC120556010 tollip coding downstream 184976 11245752 ~ 11291530 (-)
LOC120555500 LOC107373152,LOC106943100,LOC106904307 coding downstream 255564 11207540 ~ 11220942 (-)
tssc4 NA coding downstream 686736 10766173 ~ 10789770 (-)
c3h16orf87 LOC104939617,LOC103369653,LOC101078579,LOC101483362,LOC100690510 coding upstream 63733 11574033 ~ 11599622 (-)
vps35 vps35 coding upstream 96740 11607040 ~ 11636133 (-)
fgf19 fgf19 coding upstream 223141 11733441 ~ 11740920 (-)
fgf4 fgf4,LOC104954779 coding upstream 270468 11780768 ~ 11784437 (-)
fgf3 fgf3 coding upstream 283980 11794280 ~ 11797219 (-)
G26785 NA non-coding downstream 5279 11470780 ~ 11471227 (-)
G26750 NA non-coding downstream 130635 11345628 ~ 11345871 (-)
G26737 NA non-coding downstream 250094 11225218 ~ 11226412 (-)
LOC120555566 NA non-coding downstream 292682 11183133 ~ 11183824 (-)
LOC120556158 NA non-coding downstream 309202 11165880 ~ 11167304 (-)
G26802 NA non-coding upstream 49268 11559568 ~ 11559895 (-)
G26804 NA non-coding upstream 53922 11564222 ~ 11564551 (-)
G26805 NA non-coding upstream 54384 11564684 ~ 11565380 (-)
G26806 NA non-coding upstream 55962 11566262 ~ 11566625 (-)
G26831 NA non-coding upstream 61513 11571813 ~ 11572177 (-)
G26298 NA other downstream 2179760 9295068 ~ 9296746 (-)
LOC120555589 cemip other downstream 2497362 8759601 ~ 8979144 (-)
tlnrd1 mesdc1 other downstream 2717698 8733419 ~ 8758808 (-)
il16 LOC102796330 other downstream 2778884 8630608 ~ 8697622 (-)
LOC120555934 NA other downstream 2979871 8494353 ~ 8496635 (-)
LOC120555651 NA other upstream 132931 11643231 ~ 11669269 (-)
G26891 NA other upstream 450401 11960701 ~ 11961772 (-)
G26924 LOC108281047 other upstream 794239 12304539 ~ 12304824 (-)
G27075 LOC104939823,LOC100707594 other upstream 1559696 13069996 ~ 13095766 (-)
G27321 NA other upstream 2959458 14469758 ~ 14470345 (-)

Expression


Co-expression Network