homer2 (homer2)


Basic Information

Item Value
gene id homer2
gene name homer2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18607469 ~ 18639221 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795132.1
tgtcgctgctgctgctcttcatATGAAACAATCTTGTTGGGGAGGAAGAAACTCTGCGCAGCGAGCAAGGAGGGGAATGCATTAACTTAATTCATCAACGCCGATTGTTTGAAGATAGCGAGGAAGAAACATTCCGATCTGggatttttttacaaaaaccaTAGAGAAAAACTTCCTGAAATGACTGGGGttctgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcttcaACCCCGGTGAATCGAGTTTTTCGTGCTCTCATATTTCAGTTGTCTCTCAGCAGTAAGAGGACTTGTTCGAAGCAGGCGGACTCTTTTGCACCGCTATTCATCTGTGGACTTTGAGTGcgctttaaaacattatttcctCAAGACTCGCAGCAAATAGAGCCTATAAAAGGAGTTGTTCCTCAAGTCCGCGGCAATGGGGGAGCAGCCGATCTACACCACCAGGGCCCATGTCTTCCAAATTGACCCAACCACCAAGAAGAACTGGGTCCCTGCCAGCAAGCAGGCCGTCACTGTCTCTTATTTTTACGACAGCACACGGAACAGCTACCGCATCATCAGCGTGGATGGATCcaagGTGATCATCAACAGTACCATCACGCCGAACATGACGTTCACCAAGACGTCGCAGAAGTTTGGCCAGTGGGCGGACAGCAGGGCCAACACTGTGTTTGGACTGGGCTTCGCTTCAGAGCAGCAGCTGGCCAAGTTTTCTGAGAAGTTCCAGGAGGTAAAAGATGCAGCCAAGGTAGTAAGGGAATCTCAAGAAAAGGTGGAGACGATGAGCAATCACTCCCAGGAGTCTGGACGTGAGACGCCCTCATCCAACCAGGCGTCCAGCCTTAATGGAACAGATGATGAGAAAATCTTCCATGTTGGTCCGGAGGCTGCTGTGCTGAAGACCGAGAACGAACGTCTCAAGAGTGCAGTAGAACAGAGCAACACCAATGCCAAGAAGTGGGAAACAGAGCTGCAGACTTTAAGAGAAAATAATGCCAGGCTGGTGGACGCACTGCAGGAGTCCTCCGCTAATGTAGAGAGCTGGAAGAAACAACTTAGTGCCTGCAAGGAAGAGAGTGACGCGCTCAGGGAAAAGATTACAGAACTAGAAGCTCAGTGTAACGAAGCCAATCAGGAGAAGCAGAAAAACGCCCAACTGTCTGTACGAGTGCAGGAGCTGGAGACTGAGCTGCACGAAAAAGAGCAGGAGCTGGAGAATCTGAGGAAGCAGGCCGAGATAATCCCTCAGCTGATGGCGGAGTGCGAGAGCATCACCGCAAAACTGCAGACTGCCGAGACGAAGAACAAGGAACTGGAGGGGAGGATTGGGGTTCTTCAGCTGGACGTAGACGACAGTCAACACAAGCAGGGCAACATGAAGAACGAGCTGAAGAAGTTCATGGATACACTGGATGGAAAGATAGACGAGCTGCATGAGCTCCGGCAGGGGCTCTCAAAGCTCGGCGTCGATAACTGAGTAAAGTGGCACTGAGCTGaaagggtcagaggtcaggtaCGGAGGGGATTCACTACAGTACGTCTTCAGGGCAGGAACTATGTGGCACCTACTCCCCCGAGGTGATGTCCACTCAGACACTATCAGCTTTGGCTTCTAATAAACACTACCATGTGCGAGAGAGATGTTTtttggagagggagagagagactggcAGGAGGAAGGCCAGCATGCTCCACCAAATGgctccattttgtgtgctggcATTCTTAAACTAAatcaagaatcacactttgagCTTTCttatctgtttctgtgtgtgtgtgtgtgtgtgtgggggactACTTTAAAAAGCTGGTGGTGGGTTCTTAGAttctgtccatctgtctttttttctgaagGCTGCAGCACTTCTTCACAGGCAGTCTGAGCGAAGAGTAGAAGAGGGGACTAAAAAAgggctaaaataaataaaacacaaagacgATGCTGTTCAGCATCACTCAAGTAATAATTGGTGTTAATCCTTGTGGCCCCCTCAGAGAATTAGAGATGAAATCTTTCTACAGACTGTCCTTGCTGTTGCCTCTCGTCTATCTCAGGTGTGTTAGAAGACAGTTTGTACACATTAGATTATATGCACATACGTGACAAACGGCCGTGACACAAAGTGCCTCCAGGCGAGTCTAAATCTACCTGGCAAGGAGAACTGGCCAAGCGATGACCATCACCATAATTATAACTTTTTGTGAGAGAACCTGATGAAAAACAAACCTTCTCACTAATAAAATGAGATGAGAAGAAAACGCAGGCATGCAAGCCCATCCCGAGGACGTTAATGTGGTGGTAAACTTCAAGAACAAAATGTCATTTTGCACAAAAAACAGTCCGAGGAGGGACCACAGCAGGAAGTCATCAACTCTCTTGTGGGTGTTTTCCGTAaacacttaatttttttttgttattgattATTTTGCTTTAAGAAGGAAAGTTCTCTTGTCTCGGGAGCTTTccttcaaaaacatccaaaaatatGAATAGGAACCCCAATTTTCCCAAGAGTCTAGTGCAGTGTTCAGAGGACTTTGTGTGTTCAATAGTGTTGTTGTCCACATGTAGAACAAAGATGTCTCCAAGGCTGTTGATGTGCTTCCTACACACTAGTCTTTGTTATGGTGGTGGTTATTTGTGGGTGAGGGGACTAGGTGCTGCTCAATGGGTGAATAATGTGAAAGTGTACTTTACTGAGAACATTTAGATGGCGTTGGCCTTTTCACTACAAACCCTGTCAAATTCttggtttttgttttatatatttatttattttggtgcCTCTCTGCAACTAGTGTTTCTAGAACATACCAAGTAAATCAAGCTTATCCTATAATGTCTCTATAGATGTAAGATAATATATTCTAAAAGATACCAAACTGTCAGGATTCAGAGGCTTCATAATTGAGGATTTGTTTGCAGGATGGTGTCACAGCTGTTTTTGGGGAAGTCGATCTTGAAACATGGTACATTTGAAATAAGAGGCATATGTTGCAGTGGCACATTTACTGGGTAATACTATGATGTTATAATAATTCTATATTTTTTCATCAGTGTTTTGATCTGTGAAGGGACATTTTGCTTCTCTCTGTGTTTAACTCTACTGTTCATAAATCACCTGAACCTGGAACACAAAGTATGATCCTTCCTTTTGAACCAATGCCTCTTGTTCACTTTTGTGACTCCTGTTCAATATTGTACAATAGAACTGACAATTGTTAAAATTTAGTTTAATTACAA
>XM_039795133.1
CAGGACCAACGATCAATATCAAATCGTTTAAATTCTGATAGGCAATTTAATACAACAACGGTCGAATATAAACCCAAGTTATTAGGCTGATACATATGTTTAACTGAAGATGCAAGTAGCCTAGAAAGCTGTAACCGAACTGCTTGTTGGCTTAGGCTAATTTAGGACCAACTACCTGAAAGCCATCGAAGTCACTTACAAACATGGAGCAGCCGATCTACACCACCAGGGCCCATGTCTTCCAAATTGACCCAACCACCAAGAAGAACTGGGTCCCTGCCAGCAAGCAGGCCGTCACTGTCTCTTATTTTTACGACAGCACACGGAACAGCTACCGCATCATCAGCGTGGATGGATCcaagGTGATCATCAACAGTACCATCACGCCGAACATGACGTTCACCAAGACGTCGCAGAAGTTTGGCCAGTGGGCGGACAGCAGGGCCAACACTGTGTTTGGACTGGGCTTCGCTTCAGAGCAGCAGCTGGCCAAGTTTTCTGAGAAGTTCCAGGAGGTAAAAGATGCAGCCAAGGTAGTAAGGGAATCTCAAGAAAAGGTGGAGACGATGAGCAATCACTCCCAGGAGTCTGGACGTGAGACGCCCTCATCCAACCAGGCGTCCAGCCTTAATGGAACAGATGATGAGAAAATCTTCCATGTTGGTCCGGAGGCTGCTGTGCTGAAGACCGAGAACGAACGTCTCAAGAGTGCAGTAGAACAGAGCAACACCAATGCCAAGAAGTGGGAAACAGAGCTGCAGACTTTAAGAGAAAATAATGCCAGGCTGGTGGACGCACTGCAGGAGTCCTCCGCTAATGTAGAGAGCTGGAAGAAACAACTTAGTGCCTGCAAGGAAGAGAGTGACGCGCTCAGGGAAAAGATTACAGAACTAGAAGCTCAGTGTAACGAAGCCAATCAGGAGAAGCAGAAAAACGCCCAACTGTCTGTACGAGTGCAGGAGCTGGAGACTGAGCTGCACGAAAAAGAGCAGGAGCTGGAGAATCTGAGGAAGCAGGCCGAGATAATCCCTCAGCTGATGGCGGAGTGCGAGAGCATCACCGCAAAACTGCAGACTGCCGAGACGAAGAACAAGGAACTGGAGGGGAGGATTGGGGTTCTTCAGCTGGACGTAGACGACAGTCAACACAAGCAGGGCAACATGAAGAACGAGCTGAAGAAGTTCATGGATACACTGGATGGAAAGATAGACGAGCTGCATGAGCTCCGGCAGGGGCTCTCAAAGCTCGGCGTCGATAACTGAGTAAAGTGGCACTGAGCTGaaagggtcagaggtcaggtaCGGAGGGGATTCACTACAGTACGTCTTCAGGGCAGGAACTATGTGGCACCTACTCCCCCGAGGTGATGTCCACTCAGACACTATCAGCTTTGGCTTCTAATAAACACTACCATGTGCGAGAGAGATGTTTtttggagagggagagagagactggcAGGAGGAAGGCCAGCATGCTCCACCAAATGgctccattttgtgtgctggcATTCTTAAACTAAatcaagaatcacactttgagCTTTCttatctgtttctgtgtgtgtgtgtgtgtgtgtgggggactACTTTAAAAAGCTGGTGGTGGGTTCTTAGAttctgtccatctgtctttttttctgaagGCTGCAGCACTTCTTCACAGGCAGTCTGAGCGAAGAGTAGAAGAGGGGACTAAAAAAgggctaaaataaataaaacacaaagacgATGCTGTTCAGCATCACTCAAGTAATAATTGGTGTTAATCCTTGTGGCCCCCTCAGAGAATTAGAGATGAAATCTTTCTACAGACTGTCCTTGCTGTTGCCTCTCGTCTATCTCAGGTGTGTTAGAAGACAGTTTGTACACATTAGATTATATGCACATACGTGACAAACGGCCGTGACACAAAGTGCCTCCAGGCGAGTCTAAATCTACCTGGCAAGGAGAACTGGCCAAGCGATGACCATCACCATAATTATAACTTTTTGTGAGAGAACCTGATGAAAAACAAACCTTCTCACTAATAAAATGAGATGAGAAGAAAACGCAGGCATGCAAGCCCATCCCGAGGACGTTAATGTGGTGGTAAACTTCAAGAACAAAATGTCATTTTGCACAAAAAACAGTCCGAGGAGGGACCACAGCAGGAAGTCATCAACTCTCTTGTGGGTGTTTTCCGTAaacacttaatttttttttgttattgattATTTTGCTTTAAGAAGGAAAGTTCTCTTGTCTCGGGAGCTTTccttcaaaaacatccaaaaatatGAATAGGAACCCCAATTTTCCCAAGAGTCTAGTGCAGTGTTCAGAGGACTTTGTGTGTTCAATAGTGTTGTTGTCCACATGTAGAACAAAGATGTCTCCAAGGCTGTTGATGTGCTTCCTACACACTAGTCTTTGTTATGGTGGTGGTTATTTGTGGGTGAGGGGACTAGGTGCTGCTCAATGGGTGAATAATGTGAAAGTGTACTTTACTGAGAACATTTAGATGGCGTTGGCCTTTTCACTACAAACCCTGTCAAATTCttggtttttgttttatatatttatttattttggtgcCTCTCTGCAACTAGTGTTTCTAGAACATACCAAGTAAATCAAGCTTATCCTATAATGTCTCTATAGATGTAAGATAATATATTCTAAAAGATACCAAACTGTCAGGATTCAGAGGCTTCATAATTGAGGATTTGTTTGCAGGATGGTGTCACAGCTGTTTTTGGGGAAGTCGATCTTGAAACATGGTACATTTGAAATAAGAGGCATATGTTGCAGTGGCACATTTACTGGGTAATACTATGATGTTATAATAATTCTATATTTTTTCATCAGTGTTTTGATCTGTGAAGGGACATTTTGCTTCTCTCTGTGTTTAACTCTACTGTTCATAAATCACCTGAACCTGGAACACAAAGTATGATCCTTCCTTTTGAACCAATGCCTCTTGTTCACTTTTGTGACTCCTGTTCAATATTGTACAATAGAACTGACAATTGTTAAAATTTAGTTTAATTACAA

Function

symbol description
homer2 Predicted to enable G protein-coupled glutamate receptor binding activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in synapse. Is expressed in musculature system; periderm; and somite. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 68. Orthologous to human HOMER2 (homer scaffold protein 2).

NR:

description
PREDICTED: homer protein homolog 2

GO: NA

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795132.1 True 3299 mRNA 0.45 9 18607469 18638819
XM_039795133.1 False 3032 mRNA 0.44 9 18607469 18639221

Neighbor

gene id symbol gene type direction distance location
LOC120555642 fsd2 coding downstream 22875 18575060 ~ 18584594 (-)
LOC120556233 LOC104953026,LOC102209912,LOC102302305,LOC101469394 coding downstream 125446 18471714 ~ 18482023 (-)
LOC120555694 LOC101077645 coding downstream 141388 18456550 ~ 18466081 (-)
usp8 usp8,LOC102785891 coding downstream 156450 18439582 ~ 18451019 (-)
tmod2 tmod3,LOC102784726,LOC102314562 coding downstream 247259 18335550 ~ 18360210 (-)
ap1s2 ap1s2,LOC101078094,LOC107095773,LOC103463884,LOC101477195 coding upstream 32131 18671352 ~ 18676489 (-)
LOC120556226 LOC103360767 coding upstream 60124 18699345 ~ 18705558 (-)
ppef1 NA coding upstream 67069 18706290 ~ 18718603 (-)
cdkl5 LOC106914639,LOC103143564,LOC106952012,LOC105934466,LOC101067260,LOC102215627 coding upstream 89555 18728776 ~ 18767719 (-)
nhsb nhs,LOC101481021,LOC104963549,LOC100699658,LOC102307289 coding upstream 161626 18800847 ~ 18868686 (-)
G28309 NA non-coding downstream 38392 18568101 ~ 18569077 (-)
G28302 pde8a,LOC104953025,LOC106596071,LOC108251619,LOC102210709 non-coding downstream 49250 18542458 ~ 18558219 (-)
G28291 NA non-coding downstream 109380 18497849 ~ 18498089 (-)
G28284 NA non-coding downstream 136019 18469813 ~ 18471450 (-)
G28267 NA non-coding downstream 220861 18385531 ~ 18386608 (-)
G28429 NA non-coding upstream 366687 19005908 ~ 19008421 (-)
G28437 NA non-coding upstream 397627 19036848 ~ 19037059 (-)
G28438 NA non-coding upstream 414103 19053324 ~ 19053869 (-)
G28442 NA non-coding upstream 424107 19063328 ~ 19063839 (-)
G28447 NA non-coding upstream 445081 19084302 ~ 19087065 (-)
G28269 mapk6 other downstream 186970 18416069 ~ 18420499 (-)
G28265 NA other downstream 223827 18382705 ~ 18383642 (-)
G28121 NA other downstream 386919 18218122 ~ 18220550 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other downstream 1006079 17599750 ~ 17601390 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other downstream 1094301 17508123 ~ 17513168 (-)
LOC120556268 btbd1 other upstream 10808 18650029 ~ 18658659 (-)
G28345 NA other upstream 80151 18719372 ~ 18720019 (-)
LOC120555695 NA other upstream 414870 19054091 ~ 19069996 (-)
LOC120555836 pcnp other upstream 484320 19123541 ~ 19126411 (-)
LOC120555658 NA other upstream 2940747 21579968 ~ 21583558 (-)

Expression


Co-expression Network