LOC120555930


Basic Information

Item Value
gene id LOC120555930
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18639282 ~ 18642799 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795134.1
TTAAACTATGTTTATTTGTTCCGGAGGAAGGGTTTTGGCGACGTACTGGTCTGGGACATCTTCCGAAAAAGTCGTTTCCTGAACATTAGATAGAAGTTTTTAGCGAAAGCAAAAATCATTCGCGTCGTGCAAAGCATGGCCGAGACCAATGAAAACCTGAAGAGCTACGAGGAGATGTTTGCCAACAGATTTTCATCGGACGACAAAGAATACCAGCAGTATCTGGATCGTCCAGCTGACATCCCACCCATCGTCGAGGACTGGAGGAGTCGTGGAGGTGGAAACCACAGAGGCAGGGACAGGTACCAGGACCGTCGAGGTCGTGGCTGGGGAGGAGGTCGAGGTTGGGGAGGGGAACATCGTGGGCAGCAACACTGGcatgacagagacagagacagagacaggcactGGGGGCATGGAAGTGGGTATCAGTCAGGCCCTCCAAGCTCCAACCAGGGATACAACTCCTATCATCAGAGACCACATTATGACCGCTGATCTACTCTAATCTCTCGGGTGTTAACAGTATTCAGTCTTACAACTTGCATTCTTGACTCTCCTTTCCAGTCTCATAAGCTGAGTATAAGGCACAACGGTTGAGCTACCGgtatatatcaatataaataATGTACTGTCGATCATTGTAATTGTGTggaaccttctttttttttaatattgtgacagttttctttttgtcagaATTTAAAATACAAAGCCAATATGTATTCCAATCTTTGCCAGAATTATTTCTGAAATGTGACTGCAGAAGATAACCGATCCTGTTTGACTTCCACTTACCTTTTTACTATACCAAAATACAGCCATTCTTTCCCATATGTATTGCTCAGCCCTGTAATCATAATgcattttcattacatttttgtaaatgatAATAAGAACATACTTGCAGTTTTCAATACTGGCACTCATTACAAATGACAAAAGTAACACATTTCTCTTATAATATTTCAGGTATGTGGGCTGTTTTGATTATTACATTATATGTTGGACTTTTGTGTTCAGATAGTTTTGCAGCTACATCTTTACATGCTTTTTGGGTACAGTATTGTTGCAAAGAGTGAAtctgaatttccagagaaaatcTGTTtgtaatgcagctttattttttGTGTCACAACATTGTAGAAGGATACtgttaaactgtttttaatAAACATGTATTTTCTTAA
>XM_039795135.1
TATTGTAAAAATGATTTTTATTGTaacttttgtgttgtgtgtgctttagctaacattagctaatcgCGTCCAGATGTGTCTAGCTAGTACTCGTTGTTTCGCATGGGGGATTTTGGCTTGCAGCATAGGAAACACAAGACTCATCAAAACAGACCATGGCCGAGACCAATGAAAACCTGAAGAGCTACGAGGAGATGTTTGCCAACAGATTTTCATCGGACGACAAAGAATACCAGCAGTATCTGGATCGTCCAGCTGACATCCCACCCATCGTCGAGGACTGGAGGAGTCGTGGAGGTGGAAACCACAGAGGCAGGGACAGGTACCAGGACCGTCGAGGTCGTGGCTGGGGAGGAGGTCGAGGTTGGGGAGGGGAACATCGTGGGCAGCAACACTGGcatgacagagacagagacagagacaggcactGGGGGCATGGAAGTGGGTATCAGTCAGGCCCTCCAAGCTCCAACCAGGGATACAACTCCTATCATCAGAGACCACATTATGACCGCTGATCTACTCTAATCTCTCGGGTGTTAACAGTATTCAGTCTTACAACTTGCATTCTTGACTCTCCTTTCCAGTCTCATAAGCTGAGTATAAGGCACAACGGTTGAGCTACCGgtatatatcaatataaataATGTACTGTCGATCATTGTAATTGTGTggaaccttctttttttttaatattgtgacagttttctttttgtcagaATTTAAAATACAAAGCCAATATGTATTCCAATCTTTGCCAGAATTATTTCTGAAATGTGACTGCAGAAGATAACCGATCCTGTTTGACTTCCACTTACCTTTTTACTATACCAAAATACAGCCATTCTTTCCCATATGTATTGCTCAGCCCTGTAATCATAATgcattttcattacatttttgtaaatgatAATAAGAACATACTTGCAGTTTTCAATACTGGCACTCATTACAAATGACAAAAGTAACACATTTCTCTTATAATATTTCAGGTATGTGGGCTGTTTTGATTATTACATTATATGTTGGACTTTTGTGTTCAGATAGTTTTGCAGCTACATCTTTACATGCTTTTTGGGTACAGTATTGTTGCAAAGAGTGAAtctgaatttccagagaaaatcTGTTtgtaatgcagctttattttttGTGTCACAACATTGTAGAAGGATACtgttaaactgtttttaatAAACATGTATTTTCTTAA

Function

GO: NA

KEGG:

id description
K18708 FAM103A1; RNMT-activating mini protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795134.1 False 1190 mRNA 0.40 3 18639282 18642799
XM_039795135.1 True 1210 mRNA 0.40 3 18639431 18642799

Neighbor

gene id symbol gene type direction distance location
LOC120555641 whamm,LOC102778540 coding upstream 34312 18585773 ~ 18604970 (+)
pde8a pde8a,LOC100690151,LOC102210709,LOC101463592,LOC102780154 coding upstream 81947 18505528 ~ 18557335 (+)
gatm gatm,LOC102780634 coding upstream 148214 18486062 ~ 18491068 (+)
hdc hdc,LOC106587893,LOC103379072 coding upstream 180730 18454656 ~ 18458552 (+)
LOC120555692 LOC104956759 coding upstream 199842 18433272 ~ 18439440 (+)
LOC120556269 tm6sf1 coding downstream 17063 18659862 ~ 18663990 (+)
zrsr2 zrsr2 coding downstream 21708 18664507 ~ 18670988 (+)
phka2 phka2 coding downstream 34542 18677341 ~ 18698498 (+)
rs1a rs1,LOC101067478 coding downstream 78570 18721369 ~ 18728722 (+)
scml2 scml2 coding downstream 127583 18770382 ~ 18797783 (+)
G28195 homer2 non-coding upstream 23473 18607305 ~ 18615809 (+)
G28163 usp8,LOC102785891 non-coding upstream 193986 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 458081 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 720086 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 750065 17888761 ~ 17889217 (+)
LOC120556026 NA non-coding downstream 203470 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 411325 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 414747 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 429021 19071820 ~ 19072036 (+)
LOC120555698 NA non-coding downstream 444396 19087195 ~ 19091823 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 63340 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 895834 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3152831 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3192790 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3585660 15047877 ~ 15053622 (+)
LOC120555697 NA other downstream 431509 19074308 ~ 19087064 (+)
G28581 NA other downstream 844447 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 869557 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1129320 19772119 ~ 19993954 (+)
G28770 NA other downstream 2068305 20711104 ~ 20761147 (+)

Expression


Co-expression Network