pcdh17 (LOC104926281,LOC104949434)



Basic Information


Item Value
gene id pcdh17
gene name LOC104926281,LOC104949434
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 20920944 ~ 20990225 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039795143.1
TGCGCTGCACTGTAGCCTGCGTGTGCAGCGGACGCTTGTGGCTTCTCTTTCTGCACAGAGGAGGGAAAGAGGATACGGGTGGTACCTACTGAAGTGGTTAGGTGATGAAACTCCCTGAACCCTGCTGGAACTGACTGTTTAGATTTTTacagtaatattttttttgtgggggacTATTGCAGTGGTTTCTTTCGGTGGTTTGAGTGAACACTTACAATGACTATTCAGTTTGGCGACTGGATCGTGATTATTGCTCAGATGAGTCTGGGCGCTCCGCTGAATTTAAATTAGGTGTTCAGCACCACAGATTgctggaagaggaagagagagacagagcaaagACAATCCACAAAGACAAATGCCAAGGCCTCAGATGATGAACAGAACTCTTTATTTGATCCTGAATAATAGAAACGCCACATTTGAAGAAAATACCAACAGGTCGAAGGAAGCGTAAACAAGACAGATTATAGCAGCTTTTACGGAGTGGGGATGTatctttctattttctttttcctcctcttaTGGGCTCAAGCCCTGACATTAAAAAACTTGAATTACTCTGTCCCGGAGGAACAGGGTCCGGGTACAGTGATTGGGAACATTGCCAAAGATGCTAGACTCGGACTCGAACAAGTTGGGCAGGGAGGACAGGGTAAGAAAGCCAACTTCAGGGTGCTGGAGAACTCCGCTCCGCATCTCATTGATGTGGACCCCCAAAGTGGACTGCTGTACACAAAGCAGCGCATCGACAGGGAAACCTTGTGTAAGAGAAACCCCAAGTGCCAGCTCTCCATGGAGGTGTTTGCCAATGACAAGGAAATCTGCATGATCAAAATAGATATTCAGGACATTAACGACAACTCACCCATTTTCCCTTCGGATCAGATTGATATTGACATTTCTGAAAATGCATTGCCAGGGACACGCTTTCCCCTGACCAGCGCACATGACCCAGATGCAGGGGAGAACGGCCTGAAAACCTATCAAATAACACGCGATGACTACAATCTCTTTTCCTTGGAGGTAAAATCCCGTGGGGACGGGACTAAATTCCCAGAATTAGTTATTCAACGGCCATTGGATCGAGAAGAACGAAGCCATCACACACTTATTTTGTCAGCCACCGATGGGGGGGAATATCCTAGGTCAGGTACCATGCAGATAAATGTTAAAGTTATTGATTCCAATGATAACAGCCCGGTCTTTGATCAGCCCTCGTATGTTGTGGAAATTCCTGAAAATTCACCTCCTGGTAAAGTGCTGATTGATTTAAACGCCACTGATCCTGATGAGGGCAACAATGGACAAGTTGTCTATTCTTTTAGTGGATATGCCCCAGAGAGAATCCGGGAGCTCTTTTCTATAGATTCCAGAACAGGGGTCATAAAGATTCAGGGAGAAATTGACTACGAAGAGAGCCCAGTTATTGAGATTGACGTCCAGGCAAAGGATCTAGGTCCAAATCCAATCCCAGGCCATTGTAAAGTCACTGTTAAAGTGCTTGACAGGAATGATAACTGGCCATCTATAGGCTTTGTGTCCGTGAGACAGGGAGCGATCAGCGAGGCAGCACCTCCAGGCACTGTCATTGCTCTTGTCCGTGTCACAGACAAGGACTCGGGAAGGAATGGGCAGCTTCAGTGCAGAGTGCTGGGTAATGTCCCTTTTAAACTTGAGGAGAACTATGATAACTTCTATACTGTGGTGACAGACAGGCCCTTGGACAGAGAGGTGCAGGATGAGTTCAATGTCACCATTGTGGCCAAAGACAATGGCATTCCTCCTCTAAACTCCACAAAGTCATTCACTGTAAAGATTCTGGATGAGAATGACAATGTTCCTCGCTTTACCAAGTCAGTTTACCTTCTTCAAATACCTGAGAACAACATCCCTGGGGAGTACCTAGGTTCAGTTCTGGCACATGACCCAGACCTTGGCCAGAATGGCACAGTGTACTACAGCATAATCAACTCCAATGTGAGTGGGGGTGATGTCAACACCTATGTTAATGTGAACGCTGCTAATGGAGCCATCTATGCTGTGAGATCTTTTAACTATGAGCAAATAAAGTATTTTGACTTTAAGGTTCTTGCTAGAGATGCAGGATCTCCACACCTAGAGAGCAATGCTACAGTGCGCATCAGTGTTCTGGATGTCAATGACAACATCCCCGTCATAGTTCTGCCCCTGCTCTTAAACGACACGGCTGAGATACATGTGCCACGTAATGTTGGTGTTGGCTACATTGTGACCACAGTGAGGGCGGTGGATAATGACTATGGTGAGAGCGGGAGGCTCACATATGAGATCTCGGATGGAAATGAGGAGCGCCTCTTTGAGATTGATCCGGTGACTGGGGAGGTGCGAACAGCCCACCCATTCTGGGACGACGTGAACCCCATTGTGGAGCTGATCATCCGAGTATCGGATCATGGCAAGCCAACTCTCACTGCTGCCGCCAGGCTCATCGTCAAGGCCTCCAACGGCCGTCCTCCTGATGGACTGCCACGCACGAAGGACACTCAGAACTGggacatatccctgcctcttaTTGTAACTCTAAGCATCATATCTATCATGCTTCTGGCTGCCATGGTGACCATAGCGATCAAGTGCAAGCAAGAAAACAAGGAGATCCGTACCTATAATTGTCGCATTGCAGAGTACTCGCACCCTCAGCTGGGAAAaggcaagaagaagaagattaaCAAGAACGACATCATGCTGGTGCAGAGCGAGGTGGAGGAGCGGGATGCCATGAATGTGATGAATGTGGTAAGCAGCCCTTCCTTGGCCACCTCTCCCATGTACTTTGACTACCAGACACGCCTGCCACTCAGCTCACCAAGGTCAGAGGTTATGTACCTCAAACCCACTGCCAATAACCTCAGCGTGCCCCAAGGCCACGTGGGATGCCACAGCAGCTTCACAGGCCCAGTCACCAGCACTACAGACACACCTACTAACCGCATGTCCATCATACAGACGGACAATTTCCCCACTGAGCCTAATTATATGGGTAGCAGACAACAGTTTGTTCAAAGTAGTTCAACATTCAAAGACCCAGAGCGAGCCAGCCTCAGAGACAGTGGTCATGGTGACAGTGACCAGGCTGACAGCGACCAGGACACCAACAAAGGCTCCTGCTGCGATATGTCTGCAAAAGAAGCCCTAAAGTTGAAGGCTACAGGCGTGAAACCACCGCCTTTGGAGCAAGATGAGGATTGTGTGAATTGTACAGAGGAGTGCAGAGTACTGGGTCATTCTGACCGCTGCTGGATGCCCCAGTTCCCCGCTGGAGGAAACCAAGCAGAGGGTGTCGACTACCGCAATAATATGTTCGTGCCAGCGGGGATGGAGACTGTGCCAGAGACCGAGACCTACGAGACTGTAAACCCCAATGGCAAGAAGACGTTCTGTACCTTTGGAAAAGAGAGGCGTGACCACACCATCCTAGTAGCCAATGTCAAGCCCTACTTAAAAGCAAAACGTACCCTCAGTCCACTGCTCCAAGAGGTACCCTCAGCCTCTGGCAGTCCTACCAAGGGCTGCTCCACCATGTCTCCCTGCTCTTCAGTCAAAAGCCCAGCTGACGGAGCTGAAGGCAAACCTCCTCCTGCCACCTGCTCCGGCCACTACGGGCCTCCCGATGGCCAGTACCTGTCACCAACCAAACAAACCAGAGACCAGGGGGTCTATCCACCTTTGCCTCCCTCAGACCCAGTGGCCAAGGTGCTtgcagaggcccgttccaggaTCAGCCAAGAGGCAACTGGCGAAATGGAGTGTGTTCTGGAGCAGGTGGAGCCCGACGCGAACCGTGACAGAATGGACGCTGACCAGGTGGTGAGAGACATCGACAAACTATTGCAGGACTGCAGAGGAAGTGAGGCCACTGGCACActcaggaagtgacacaaatgaCTGCAACAAAAAGAAGtatagaggaagagagaggaatgTAATGCTATTCCAAAAACTCTCATGCCAAAACTGTCaccaaaacaaatcaaaaaggTTAAATGGCTCTTATGATGGGAGCTTTTTTCACTGTATTTGTTGTTGAAAATACCGACACTGGACAGACAATGGGAACATTTATTACGTCATTTGGCACCAGTTTAGGTGCTAGGATCCCTACCAACAAAAAAGTAACTGGGTAACAAACATCTGAATTCTGCTGAATTTAtaaactctttttgttttgGATTCTTAAGCAAATTGCAGAGGCTTATGCCTCTGGCACCTCGCAAGCTATTATCTAAGTGCCCACCAGCTCATAAGTGTGTTGTTCATGGTCTCTCGTGAAATCCTACATATCTAAGTGTGTGTAGGTGGATTTCTGTTATGTGTGACGGCCATAGAAACTGAATGAAAAAGGACTATTTATGGTCAGACATGACAATCGATGTGGATACAGTGAAACAAATTTGAATCTATTTGGGACAGTGAAAGACCGAAATACACAAAATAACCTTATCTTTCTTGACTTTAATATAGGTGTTTAATGTGTGATGGATCCCGTATCAACATGAAGAGATTGGTTAAtcaggtgtgtgtttgcaggggTTGGTTATGGACTTGGGGACGGAGGGGCTTAATTGCTACGCTGAAAGATAATTATTAACAGTGTAACCATGTTTCACCTGTCATTTGTAGCCACATGTGTAAGCTGTGTCTGTCTCGCGCCTCTATTTAAACATTCATGTTGCTGACTGGTGTAGTTGCATGCACCAATTTTACACATGTGCACTACACTTTGCGCATACACATGCTGACACACTAACATGCACTGATGCCcctacacacacgcaaacacacacacgtgcacactaATGCTTACACACAAATGGCCATCCGTGTAATTGTCTTATACATGAACATCATCAGCTTTCAGTCCCTTGTGTACAGTGAATTATCATGTGTGTGACTATGCCTTAAGGCAATCACAAGTTGTATAAAAAGGGACATTTTTTCCTCAACTGTGAAAAGATGATATCTATATCATTATATAGATGACTATGTAAGAATCCATGTATAGTGTCcaaatattaacaaaatatttatacattttataagaaaaaaagaaatgaggaATCTCAGCAAAAAGTGTCCTTGAGTTAAGGTCAAGTCCGGGGTATTAACTCAAAGAACTGCAAAGGACACTGCCATTGTTTCGAAGACAAATatccaaaaatataaataaacaagaaaATGTCCCTTCACATTATCACTATACATAATATCATTATATGTGTAAATGTATCCAATTTAGATGTGTTTACATCAAACTGAcatatttttattgattttactgCAATTTCTGTGCATTTGAGCCAAATTGTTATGTGTACAAAAGCtatattgtgtattttattaaattaatatataGTTGTGTTGCAATATACATGGGCTTATATTGTATTTGGCAAAGTTGCCTTAGTAGCTGTCGAACTCTGTGAGTTTGCTTTAGTTTGggtttttgttgatgtttttttcctctctatTCTGCGTCTTTGCAGGCTGGCTTCAGTGCTTTTGAGATGTCGCCTCTTTTTACCCGAAGGTCCAGCTGGATCAAATACAATAACTGTTAAAAGCTTAATGAGCCAGCTGATCTAGAATACAAATCaaaccaacaacaaaaagcaacaaccacaaacagtTTGAATATTTTTACTGAGCAGATTTTTACAGGGCAGCtattttctttaacaataaCTAGTATGCGTATCTTgtgttcattatgttttaacttTCTTTCCAAAAAAGAAACCTGCCATATGGAAAATGGAGTGGTTTCCTTGGCGATCATAAAACTGCCTTACTGTCTCTGCAGAGAGCTTGTTGTAtctgtggagcttgtgactgctTATAAAGCCCTGGTCCACCAGAATGTGCATTTTCTATTAAGGACCAACAGAGGTTCTTTTTCAGCagtctgtgtttatgtatgtactCCTTCTCGATACATGTTAGAATTCTCATACTTTGCAGAGAAACTTGACATCTAAAATTCTATCTGAAGTTACTTTGGATTTGATGTCTTAGCTGTTTAGGTACATGGTTTATATAACCAAGTGTCTTCACATTCAggctttcttaaaaaaaataattatacagacatttatttttgaaaattttGGCACATTTCGGCCACTCTCTGAAATAAGGGAGGTGCTTTTTCTAATATACTCTGACAGTAAAAAAAGCAGATCAGTAGGCTATTAGACTAGATGTGTTTTGGAAAATATGACCACAATCACCACATCTATGTAAGATGCAGCCATGAGAGGGAACAGTGACTTGCATTCATATGGCTCctgttgtgtttactttaaAGCATTTGTGAGCTGAGTTGGAATTTTGACAGCAGATATAACACATTTTATCCTGCAGACATGGAACATCTAAGTATTTGGGTATTTTTGtacttgtttcttttttttaatcgagaAACATGTATGGACATCCTCCTGTCATTCTGCCATTTTTCTGTATCTTTTGCCTTCTTGccatctttttttatatttcacgaTTCATTTGCTTACTTTTCTCCTCTTCAGCTGTTTGCTTTTTCGCCTCTAAGGAGCAAAGCAACTGTtagcttttctcctctctttcttctgtaAAATATTTGGTTTCGGTTTACCCTTGCTCTTTTACTGGGAGATGGCAGAGGCTGTTTTTAGAGAGGGCTTGAAAGATTTGATGGAGGAAAATATTGAtggttatttttaaatgagattttATTCGTTATCTCTCTCAAATACTTAGGTAAATCAAACAAGCGTGACATTCACATCATACACACAGTTAAAATGTGCTGTTCAAAGTGCGCACTGCAGCTATGATCCTGACAAAAATGCTGTTACACGTGCGCGCATGCAcacacctagacacacacacacacacaagcacccaGGCACTTAAGCAGCACACTGCTTTTCTAAATGCATAGTCCCTTAATGTTAATGCGAAGGCTGAAAGAGAGGGCAAAACACTACCCAGACAAATGTGACACTTCCACACTTGTCTTCgtggtttattttctttttatctcaTTGTGCTCAGTCTTCATGCTGGATCAAGCATTTtctactgtgtctgtgtgcatgtgcttgATTCGCTTTCATGCCCCTCATTGTTTGACAAAACAATTCCTTTCTTCTTATTTAATATATGTCACCTGTGTTCTAAAGATTTAAATTCCAACTCACACAAAACCGATACTGCTGtggtctctttttttatttgtgcattaATTTAAACAACGTGCAGAGGTCACCCCAGGATTCTGTCTTTTGCTCGGTTTGGCTGCCACAAACAGTCACTGTCACACTCCAGGCACATTAAAAGTGCTGTCCCCTTGAATGGTGTTCTCCTGGCCTGGCCACTGTCTGGACACTCACAAACTGTGGGCAGGAAATGAGCTGTGTGCAGTGTATGGAAGGTATTCTTTAAAGCCATGGTCCCTCTCTCAGGCTATATGCTGTCTTAATAGAGCAGAAGCTGTTGCTGAGGTCAACACATAATTGGAGACTAAGCATAATGCGAGGCCTCTCATTATTGTCTAATTACACACTGTTGGCATCATACACTGTTGGCAGTGCATTACTCAAATCTAGGTATTGAGTGGGTTATTTTTGCCCACTtgagacttggttttaggaagTGATTAGAACAGGGACTTGTTGAATGTGGCTATCTGCCTCTGGTCTCTGACTCACACTGATGCAGGTGCATACAGACTCAGACAGCCACTGGTTCCCACACATAGAGACAACATGCCATTTTGGTTAGTTAAAACAAGCACCCAATGTTTGTCAGTGTAGTCCCCTCACCCCTAAGCCCACACAGATAGCATAGGGCTCCACGCTACAATGGGCAACTGGTGAAAAGACCAGAGACATTCATTTGTATGGATTATTTCAACTGCTATTGTCTAAAGGCTGTGTTCATTGTGATCTAtctgaaaaaaaagatgaaatgatcaaataaataaaacaattactAATAA

Function


NR:

description
PREDICTED: protocadherin-17 isoform X1

GO: NA

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039795143.1 True 8023 mRNA 0.44 5 20920944 20990225

Neighbor


gene id symbol gene type direction distance location
tdrd3 tdrd3 coding downstream 423219 20475627 ~ 20497725 (-)
LOC120556479 NA coding downstream 641758 20253713 ~ 20279186 (-)
gpalpp1 gpalpp1 coding downstream 1409231 19508685 ~ 19511713 (-)
gtf2f2a gtf2f2 coding downstream 1412412 19500529 ~ 19508532 (-)
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding downstream 1425531 19459171 ~ 19495413 (-)
LOC120556394 LOC104958904,LOC103352838,LOC105933796,LOC103378628,LOC107088303,LOC107687747 coding upstream 362306 21352531 ~ 21362696 (-)
txnl4b txnl4b coding upstream 378687 21368912 ~ 21371958 (-)
blzf1 blzf1 coding upstream 383989 21374214 ~ 21380699 (-)
LOC120556407 atp4b,LOC102779491 coding upstream 424982 21415207 ~ 21419254 (-)
gas6 gas6 coding upstream 464242 21454467 ~ 21472489 (-)
G28782 NA non-coding downstream 44658 20876032 ~ 20876286 (-)
G28774 NA non-coding downstream 156007 20764711 ~ 20764937 (-)
G28748 NA non-coding downstream 436930 20483441 ~ 20484014 (-)
G28747 NA non-coding downstream 440454 20479875 ~ 20480490 (-)
G28726 NA non-coding downstream 496205 20424419 ~ 20424739 (-)
G28793 NA non-coding upstream 83325 21073550 ~ 21073904 (-)
G28796 NA non-coding upstream 147824 21138049 ~ 21138377 (-)
G28797 NA non-coding upstream 230911 21221136 ~ 21221445 (-)
G28799 NA non-coding upstream 256126 21246351 ~ 21246566 (-)
G29022 NA non-coding upstream 1154028 22144253 ~ 22144464 (-)
LOC120555836 pcnp other downstream 1794533 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 1850948 19054091 ~ 19069996 (-)
G28345 NA other downstream 2200925 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 2262285 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 2500445 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 589743 21579968 ~ 21583558 (-)
G28933 NA other upstream 590817 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 896363 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 1280645 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 1558475 22548700 ~ 22601557 (-)

Expression



Co-expression Network