LOC120555943 (LOC103372586)


Basic Information

Item Value
gene id LOC120555943
gene name LOC103372586
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10425163 ~ 10465554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795154.1
ATGGCGTCGGCGGTGGACAGCATGTGTTGTCGAGAGGTGGATGCCTACTGGGCACTAGTTGAGGGTTTAGTCCCGGCCACGGACATTACCTGCCTGACGCTCCATCCCGGCTTTGATGCCTGCTGCCTCAACCCGTTCTCGCTGCAGGTAGCATACCTCAACTTCAGACAGGAGTATGGCCCTCTCCAAGCCAACAGACCAGAAGTTTCTGTGGATCAGCAAATGGCTATGGCAAACGAGTGGCTGCTGTGGCTGACCCTGTCTGCCATCGCAGCTGCTTGGCACAGCGGTGTGAGTCTCATCCACAATGGCCAGGTTTGCAGTACGTGGGGTAACTTCCACTTCAAGACCTTTGAAGGAAATGTTTTCCAGTTGCACTCGACTTGCAACTACGTCCTGACCTCTTCATGCAGGAGCAGTTACAAGGACTTCAACATCCAGATAAGAAGACAGGAGGCTGGCAACCATCAcaccatcaaaaacataattatgaaGCTGGAGGGTtcagagctgtTAGTGGAGCTCTCAGAAGGCTCAGTGGTTATCGATGGAAAACCaGCCAACCTACCATTCAGTCAAGCAGGAGTGCTCATTGAGAAAACTCCCACCTACATCAAAATCAAAGCAAAGCTGGGTTTAGTTGCTATCTGGAATGAGAAGGACACTTTTATGGTGGAACTAGACCTTAAGTACAAGAACTAAACCTGCGTTCTTTGTGGAGACTTCAATGGGGTCCAGCTCTATGATGAGTTCTACAGCCATGGTGTAAAAATATCCCCCATGGATTTTGCTAACTTCTGGAAAATGGATGGTCCAACTGAAAGCTGCTCTGACTACACGCTGGAATCAACACAAAGCTGTAACAACATGAAACCTCTGTGTGAGCAGATCCTTACAGGGCCATCCTTCAACAGCTGTCACAGTCTGCTGGACATTGCCTCCTTTACTTCTGCCTGTGTTGCAGACCTCTGCAACTGTGACAATGGCATGAATGAACACGTTGACCCCTTCTGCCTGTGCAACACTGTGTCGGAGTTCTCCAGACAGCGTGGACATGCGGGTGGCAAACCCCAAAACTGGAGAACCAAAGAGATCTGCTGGAAGTCATGTCCCGACAAAATGGAGTACAAGGAGTGTGGGAGTCCCTGTGCTGATACCTGCCCCAACCCAGAGGCCAGCCACACCTGCTTCTGCCCTGCAGGCACTGTGCTGGATGATTTAAACGGAAAGGGTTGTGTCCGATTAAACGAGTACTCCTGCAGCTACAACAGCAAGATCTATGGACCGGGGGAGTCCTACTCCAGTAACTGCAAAAAATGtgtgtgtgcgagtgGCCAGTGGATGTGTATGGAGCAGAACTGTCCAGGAACCTGCGCTGTGGAGGGAGGAGCCCACATCAACACCTTCGATGAAAAAGTCTACACCTTCCATGGGGACTGCTCCTATGTGCTGGCTAAGgaCTGCAGTGGATCCCAGTTTGTGGTACAAGGAGAACTGGAGTAGTGTGGACTGACTGAGAGCGAGACCTGCCACAAGTCTGTTACCTTGGGTTTGTCTGGAGGGGTTAATGTGATCAAAATCCAGTCCAATGGCAAGGTTTTTGTGAATGGCATCTACGCTCAATTACCCTTCTCTGCTGCTGGGTTCTCCGCCTTCAGAGGGTCCTCTTACTACCTGCTGGTGCAAACGTCTGTTGGTGTTCTGTTGGAGGTGCAGCTCCAGCCAGTCATGCAGCTCTACGTCAAAGTGACTAGTGACTACCAGGTCAAGACCTGTGGTATTCTGTGTGGGAACTTCAATGGTAACCAAGCTGATGACTTTCTAAAGCTCAGTGGCGTTCCAGATGCCACAGCACCTGGTTTTGTCAACAGCTGGAAGACACATGCTGGTTGCCCTGATGTTAAGAGCAACTTTGAGAACCCCTGCAGTCTTAGTCTGGATAATGAGAAGTATGCCCATCACTGGTGCTCCATGCTGAGTGACCCTCAGGGAGTGTTTGCCTCCTGTCACTCAGAGATCAGCCCTGACAAAGAGAACTGCATGTATGATAGCTGTAACTGTGAGAAAAGTGAGGACTGTATGTGTGCAGCAGTCTCCTCCTATGTCCATGCATGTGCAGCTGCAGGAATCCAGCTCACCGGCTGGAGGGCGACCATCTGTGAGAAATATGCTAGCTCATGCCCCAGCAGCACGGTCTACTCCTACAACGTCACGTCCAGCAGTCGCACCTGCCGCTGCATCAGCACCACAGACCCCAGCTGCTCAGTGGTGCCTCCTGGACAGGTCGTCAACAAGGATGGGGTCATGTGCACCTGTAAAGAGGGCAAACTCAGCTGCATTGGAGAGGTTATTATACAGCCAATATCTGTTTACAGCACTTGTAAAGACAGGAAGTGGCACTGCACTACCAACCAGTGTGATGGAACCTGCTCTGTCTATGGTGATGGACACTACATGACTTTTGATCAGAAGCGCTTCACGTTTGATGGCACgtgtgtgtgtgtgtgtgtgcaggactACTGTGGCAGTGCTCAGAGTAATGGAACCTTCAGAGTGGTCACTGAGAATGTTCCCTGTGGAACCACAGGAACCACCTGCTCCAAGACCATCAAGATCTTCCTGGGGAGTGCAGAACTGATTCTAGCAGAGGGAAGCTACCAGCTGCTTTCAAGTGGAAATGAATAAACAGTTCCATTCAGTTACAGCACTATGGGCATCTACTTGGTAATTGAAGCCAACAATGGACTAATTTTCATGTGGGACAGGAAGACCACCTTGTTCATCAAGCTCAGCCCAAAATATAAGGGTtatgtgtgtggtctgtgtggcAACTATGATGACAATGCAAATAATGACTTCACCACAAGGTGCCATGCTGTGGTGGTAATCCCACTGGTGTTTGGGAACAGCTGGAAGGATTCACCAAGCTGCCCCGATGCTCACAGCATCACCAGCCCCTGCACAGCCAACCCATACAGACAGGCGTGGGCCCAGAAACAGTGCAGCATTATCCAGAGTAACGTCTTCTCTCCCTGCCACTCCATTGTGGATCCTGCTCCATACTATGAAGCATGTGTATTTGACTCCTGTGCTTGTGACACGGGTGGAGACTGTGAGTGTTTCTGCACTGCTGTGGCTGCTTATGCTGAATCCTGTAATCAAGCTGGCGCCTGTATACGATGGAGAACCCCAAAGATTTGTCcTATCTTCTGTGATTACAGTGTGTGTGGTGAATGTGAATGGCACTACATGCCATGCGGATCTCCATGTATGAAATCCTGCAGGAACCCCTCCGGCAGCTGCTCGTCACAGATGCCTCCTCTAGAAGGTTGCTATCCAAAATGTCTTCCTGCTCAGCCATACTTTGATGAGGATACAATGACAtgtgtgttaaaaaaacaatgtggcTGCTACGATAAAGAGGGGAAACACTACAATAATAGTGACAAAGTGCCAAcaactgaaaactgtcaaacatggtag

Function

NR:

description
PREDICTED: mucin-5AC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795154.1 True 3483 mRNA 0.50 28 10425163 10465554

Neighbor

gene id symbol gene type direction distance location
lrrk1 lrrk1 coding upstream 328524 9861152 ~ 10096639 (+)
lins1 NA coding upstream 782205 9632007 ~ 9642958 (+)
LOC120556464 NA coding upstream 1128446 9261211 ~ 9296717 (+)
abhd17c abhd17c,LOC102793890,LOC100694079 coding upstream 1333653 9056333 ~ 9091510 (+)
mesd mesdc2 coding upstream 1674283 8745162 ~ 8750880 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding downstream 18909 10484463 ~ 10485311 (+)
LOC120555948 LOC103462314 coding downstream 62284 10527838 ~ 10609081 (+)
LOC120555949 NA coding downstream 276156 10741710 ~ 10745326 (+)
shcbp1 shcbp1,LOC104947898,LOC104967817 coding downstream 324291 10789845 ~ 10840149 (+)
minar1 kiaa1024,LOC107562943,LOC102799073 coding downstream 469079 10934633 ~ 11138398 (+)
G26512 NA non-coding upstream 39522 10385230 ~ 10385641 (+)
G26508 NA non-coding upstream 88781 10330691 ~ 10336382 (+)
G26505 NA non-coding upstream 115160 10309674 ~ 10310003 (+)
G26504 NA non-coding upstream 131035 10293775 ~ 10294128 (+)
G26494 NA non-coding upstream 149726 10259072 ~ 10275437 (+)
G26530 NA non-coding downstream 13468 10479022 ~ 10479361 (+)
LOC120556100 NA non-coding downstream 194015 10659569 ~ 10660575 (+)
G26605 NA non-coding downstream 305405 10770959 ~ 10771999 (+)
G26634 NA non-coding downstream 413388 10878942 ~ 10879304 (+)
G26636 NA non-coding downstream 435074 10900628 ~ 10900858 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 565163 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 748136 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 820701 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 1046552 9333229 ~ 9378611 (+)
G26236 NA other upstream 1269820 9068729 ~ 9155343 (+)
lto1 oraov1 other downstream 1437718 11903272 ~ 11912722 (+)
G27086 NA other downstream 2644203 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 2769681 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 3205923 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 3344381 13809935 ~ 13856423 (+)

Expression


Co-expression Network