Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC120555947 |
| gene name | hnrnpab,LOC100707314,LOC102779500,LOC101480042 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053114.1 |
| NCBI id | CM020911.1 |
| chromosome length | 46923577 |
| location | 10484463 ~ 10485311 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| hnrnpab | Enables RNA binding activity. Predicted to be involved in epithelial to mesenchymal transition and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of ribonucleoprotein complex. Implicated in hepatocellular carcinoma. Biomarker of hepatocellular carcinoma. |
| description |
|---|
| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039795167.1 | True | 849 | mRNA | 0.48 | 1 | 10484463 | 10485311 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120555943 | LOC103372586 | coding | upstream | 18909 | 10425163 ~ 10465554 (+) |
| lrrk1 | lrrk1 | coding | upstream | 387824 | 9861152 ~ 10096639 (+) |
| lins1 | NA | coding | upstream | 841505 | 9632007 ~ 9642958 (+) |
| LOC120556464 | NA | coding | upstream | 1187746 | 9261211 ~ 9296717 (+) |
| abhd17c | abhd17c,LOC102793890,LOC100694079 | coding | upstream | 1392953 | 9056333 ~ 9091510 (+) |
| LOC120555948 | LOC103462314 | coding | downstream | 42527 | 10527838 ~ 10609081 (+) |
| LOC120555949 | NA | coding | downstream | 256399 | 10741710 ~ 10745326 (+) |
| shcbp1 | shcbp1,LOC104947898,LOC104967817 | coding | downstream | 304534 | 10789845 ~ 10840149 (+) |
| minar1 | kiaa1024,LOC107562943,LOC102799073 | coding | downstream | 449322 | 10934633 ~ 11138398 (+) |
| LOC120555826 | NA | coding | downstream | 644610 | 11129921 ~ 11131472 (+) |
| G26530 | NA | non-coding | upstream | 5102 | 10479022 ~ 10479361 (+) |
| G26526 | NA | non-coding | upstream | 28851 | 10455401 ~ 10455612 (+) |
| G26512 | NA | non-coding | upstream | 98822 | 10385230 ~ 10385641 (+) |
| G26508 | NA | non-coding | upstream | 148081 | 10330691 ~ 10336382 (+) |
| G26505 | NA | non-coding | upstream | 174460 | 10309674 ~ 10310003 (+) |
| LOC120556100 | NA | non-coding | downstream | 174258 | 10659569 ~ 10660575 (+) |
| G26605 | NA | non-coding | downstream | 285648 | 10770959 ~ 10771999 (+) |
| G26634 | NA | non-coding | downstream | 393631 | 10878942 ~ 10879304 (+) |
| G26636 | NA | non-coding | downstream | 415317 | 10900628 ~ 10900858 (+) |
| G26639 | NA | non-coding | downstream | 430401 | 10915712 ~ 10916142 (+) |
| aldh1a3 | aldh1a3,LOC106562593,LOC103357544,LOC104941118 | other | upstream | 624463 | 9814697 ~ 9860000 (+) |
| asb7 | asb7,LOC102792420 | other | upstream | 807436 | 9653578 ~ 9677027 (+) |
| adamts17 | adamts17 | other | upstream | 880001 | 9391108 ~ 9604462 (+) |
| cers3a | cers3,LOC102798777 | other | upstream | 1105852 | 9333229 ~ 9378611 (+) |
| G26236 | NA | other | upstream | 1329120 | 9068729 ~ 9155343 (+) |
| lto1 | oraov1 | other | downstream | 1417961 | 11903272 ~ 11912722 (+) |
| G27086 | NA | other | downstream | 2624446 | 13109757 ~ 13110339 (+) |
| LOC120556202 | NA | other | downstream | 2749924 | 13235235 ~ 13237819 (+) |
| slc35c1 | slc35c1 | other | downstream | 3186166 | 13671477 ~ 13676613 (+) |
| lrrc4cb | LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 | other | downstream | 3324624 | 13809935 ~ 13856423 (+) |
