zrsr2 (zrsr2)


Basic Information

Item Value
gene id zrsr2
gene name zrsr2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18664507 ~ 18670988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795194.1
ACTTTGTGTGCACACACCACCTCTTCCTCTTCCATTGGCAAAACAACTCCGCatgtagctaactagctaaaGTTTGCAACAAACAGAAAGTATTCATTTATATCACTTCTCTGACAAACCGAATCAACGTTTGAAATAGCTCGTCCAGTCAGATAATAGCTAgtcccatgttttttttaaactaaacgCGGATGAGAAGAAATAAcgaaggctaacgttagctgaacATGCTAACTAGTTAACgttaccattagctagctactgtTAGCTGTGATGGCAGCACCAACTCCTCCGATTTCTGCTACTGTGTTCAGTCAAAAGCAAAGGAGGGCTGCTctgaggaaagagagaagaaaacggAAACGCCAAGCTCTCGCCCAAGCCAGAGAACGTGGGTTAAAAATTGGAGCAAGCTGTAcacctgaagaagaagaagaagaagaaaaagaagaagaagaagaagaaaaaagaaatgatgaAGATGATAAGGATTATGATGTTGCGGAGCAGGAAAGACTGCGGCTACATGAAGAGTGGTTGGAAAGAGAGAGGCTTGCCCAGGAGGAGTTCAGGCTGAGGGCTGAGAGAGAGGAGTCtgcaaggaaaagaaaagaggaggaggagCGCATGATAAAAGAGGAATGGGAGGCCCAGCAGAAGAAAGAACAAGACGAAAAAGAGCAGAAGCAGCAGGACAAGCGAGACAGAGAGGAGGCCGTTCAGAAAATGTTGGATGAAGCTGAAAATCAGCTAGAAAATGGAGAACCGTGGATGAATCCCGAGGCTCCTGTGTCAAAGAACTCTGATAACTTTGGAACAGAGCGCGACGTagccaactgtccgttcttcctGAAGACTGGGGCATGTCGATTTGGAGACCGATGTTCTCGGAAGCACGTTTATCCCACAGCCAGCCCGACTCTGATGATTCGCGGTATGTTTACAACGTTTGGCATGGAGCAGTCACGCCGAGATGATTACGATATTGATGCTTGTTTGGAACACAGCGAGGAGGAGCTCCAGGAGTCTTTCCTCGAGTTCTACCATGACGTCCTGCCGGAGTTAAAGAGTGTCGGCAAGGTGGTGCAATTCAAGGTCAGCTGCAATTATGAACCACACCTGAGAGGAAACGTTTACATTCAGTTTGACACAGAGGAGCAGTGTAAAGAGGCCATCATCAAGTTCAATGGGAGGTGGTACGCAGGCCGGCAGCTTCATTGTGAGATGTGTCCAGTTACACGGTGGAAGAATGCTATATGCGGATTGTTTGACAGACAGAAGTGCCCCAAAGGGAAGCACTGTAATTTCCTGCATGTATTTCGAAACCCTGGCAACGAATTCTGGGAGGCCGACCGAGACCTGCACATGTCACCAGACCGCAGCGTCAGGGGGAGTCGCAGAGACGGGTGGCATTCAGAGCGATACGGAGACAGGTCGTGGCGGCAACGTCCCTGCAGCAGAAGCCCACCAAGATCTGAGAGATCCCACAGCAGACGAGAGGGCGACAGGAGaaggagcagagagaggagggCCTCCCAACAGCACAGAGAGGACAAACGGTCGTCCAGACACAGCGACAGGAGGACAGATTGGTATCGGAGCAGAAGTAGAGACAGGTCGAGGAGTCGAAGTAGAGACCGAGAGCAAGACAGGCCAAGAAACAGGAGTAGAGCTAAAGACAGGGAGCACAAGTATAAGAATAGAAGtgaagagagagacagtagaGACAAAGATACAGACACTCACGGAAGAGCAAGAGAGAGGTCAAAAAGCACAAGccgagaaagaaagaaacaaagtaGAGAAAGGAGCCCCAAGAAACCAGATACAAATGAGAAACCCACTAATGAGGATACCAACACACGCCGCCGCCACAAACAGTCCAAAAAGAGCAAGAAGAAGAGCAAGAAGAAGCATAAGAAGAAAAGCCATTTGCCAGAAGTGACCACCTCATCTGGAGAGTCAGAAAAGGAGAAGGAGTCAGAGGAAGAGACGGTGGAGAATCTCACTGTAACAAGTCCCGTTCAGGAGATAAAGGAAATAGAGCTAATTCAGAAAAACAACGATACGGATGAGAGTCCATGTGTTGACAGTGAAACGTTAGGTCCTGAGGTAAAAATTCAGCAATCTAACACAGAAATGCAATGAAATGAAGCTGCTGGAAAAACCTCTTAGGGGACACAAAATCTGTGAATTTATTCAGGCTTTTCTCCTTATAACTATGTGAATGTATGAGGAATACATTGCACGTTTTGAGCAGTGATGCAGTAAGGTAGCAGTCCTGTCACCaatatgtacatactgtatgtgaatatGTTGCTTTAATTATTGAACACTCGATCACCGGCGCTGCAGCACTTCAGTTATTGTTGCTGagtaaaaacaatattaaacaaGAGatcaacaaat

Function

symbol description
zrsr2 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to several human genes including ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2).

NR:

description
PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 isoform X1

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K24273 ZRSR; U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795194.1 True 2409 mRNA 0.47 11 18664507 18670988

Neighbor

gene id symbol gene type direction distance location
LOC120556269 tm6sf1 coding upstream 517 18659862 ~ 18663990 (+)
LOC120555930 NA coding upstream 21708 18639282 ~ 18642799 (+)
LOC120555641 whamm,LOC102778540 coding upstream 59537 18585773 ~ 18604970 (+)
pde8a pde8a,LOC100690151,LOC102210709,LOC101463592,LOC102780154 coding upstream 107172 18505528 ~ 18557335 (+)
gatm gatm,LOC102780634 coding upstream 173439 18486062 ~ 18491068 (+)
phka2 phka2 coding downstream 6353 18677341 ~ 18698498 (+)
rs1a rs1,LOC101067478 coding downstream 50381 18721369 ~ 18728722 (+)
scml2 scml2 coding downstream 99394 18770382 ~ 18797783 (+)
ace2 ace2 coding downstream 204964 18875952 ~ 18889502 (+)
zgc:113276 LOC104963547,LOC103365175 coding downstream 228459 18899447 ~ 18909277 (+)
G28195 homer2 non-coding upstream 48698 18607305 ~ 18615809 (+)
G28163 usp8,LOC102785891 non-coding upstream 219211 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 483306 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 745311 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 775290 17888761 ~ 17889217 (+)
LOC120556026 NA non-coding downstream 175281 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 383136 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 386558 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 400832 19071820 ~ 19072036 (+)
LOC120555698 NA non-coding downstream 416207 19087195 ~ 19091823 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 88565 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 921059 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3178056 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3218015 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3610885 15047877 ~ 15053622 (+)
LOC120555697 NA other downstream 403320 19074308 ~ 19087064 (+)
G28581 NA other downstream 816258 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 841368 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1101131 19772119 ~ 19993954 (+)
G28770 NA other downstream 2040116 20711104 ~ 20761147 (+)

Expression


Co-expression Network