ap1s2 (ap1s2,LOC101078094,LOC107095773,LOC103463884,LOC101477195)


Basic Information

Item Value
gene id ap1s2
gene name ap1s2,LOC101078094,LOC107095773,LOC103463884,LOC101477195
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18671352 ~ 18676489 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795195.1
CACAGCACCGCTGACCTAAACGTTGTCTCACCACAACCGCTGTCCGCTAGCTAGTTTAGCATCAGTCTGGATCGAGAAGCTAACCTAATATCTTTCTAGTCTCTTTGGTTATGTATTTCGCTTGAATTTACTGAAGTTACCAGTCGTCCAAGCGACTACATTGAAGATGCAGTTCATGCTGTTATTCAGCCGGCAGGGAAAGCTGCGGTTACAGAAATGGTATGTGCCTCTGTCTGacaaggagaggaagaagatcTCCAGAGACCTGGTCCAGACCATACTGGCCAGGAAGCCCAAGATGTGCAGCTTCTTGGAGTGGAGGGACCTCAAGATTGTGTACAAGAGATATGCGAGCCTGTATTTCTGCTGTGCAGTCGAGGATCAGGATAATGAGCTGATCACCCTGGAGATCATCCATAGATACGTGGAGCTGCTTGACAAATATTTTGGCAGTGTGTGCGAGTTGGATATTATCTTCAACTTTGAGAAGGCCTACTTTATTCTGGATGAGTTCCTGCTGGGCGGAGAGGCCCAGGAGACGTCCAAGAAGAACGTGCTGAAAGCCATCGAGCAAGCTGACCTGCTGCAGGAGGAGGCTGAGGCACCACGGAGCGTTTTAGAAGAAATTGGGCTGACATAAATCATCATGCTGCTGCCTCGCAGTTCCTTCTTCCAGATACCGATCTGGCAACCTTCTTGTCTCTATCCTGTGTCCTCATGTTCACTGTCAGTGTTGTATGTATATAATCACCATCTATCTATGTGCTGTATTACTCTGTACTGTATTATCCAGTAATGTCTTTAAATGTGGTGCCAACTGTGGTTTTTAATGTCTCCTATGTACTATCTTCTCACTGTATTCTGCAGTACTATTGTCATACTTTACACCCCTAACTTACAGTACAATGTAGCGACCACATAAAAACTCCAGCATCATAATAAGATCTTCTATCATCACCGATTGCAAAGGGGAGGGGGTGTTCTGTTTGGCTTAAAGTACTTTGGGTGCTGTCGTAGCTGCAGTCGGTGCTTCTTATGAATTACCATCACACTCGAGTCACAAAGCTAATCATCCGAattcatgaaaaataaatactggCTGATCTGTGAAAAACCCAGAGGGTAGTTTTAATAAAACTATTATTCTAAATATTCTGTCCGCTGCACAAAAGAAAGGATGTTTCACAAGGGCAAAATATTATTGcattattttgttaaatatataatacgGCAATGAACCataaatatataacaatataactAATAATTATGGTGTACAAATTGAGCAAGATTTGTCATTTCTAACAATCACTTTTGGATTATAAAGAGGCCCAACATGGGAAATAGgttaaacatcttttttttttttttaatcatgcagAGGATGGAATTCTTTTTTTAGCCAGATGGTTAAAGGTTTAGAGGTTAGTCTTTGAGGACTCTAGTCTAGAAATATCTTCACAACAACAGTAACTGTTGCTAAATGACCTGTTGACCAATGATCTAAGAAAAGATCATtgggcatttcttttttttaaagaatctgAAGGTCAGCTCTCCGACTCAAACGTAATGGTAATACATGAGCGGCACCGACGGGGCTTGTGCTGTTGTGGGAATCACTGACGCAGTTATAGTCACACGGGTAAGTTCAATCCACCAATTAAGGGAAATTAAACCATTACCCATTATCAATATCCGTGCATGTTAAGGTCTGTACGAGTATGTGTTTCAAGATTCCCCTCCACGAATCAACCAtttcatttttccttttcaatgCTTAACTGATTACCTTAGTTAAACATGAGCAGTTGTTGCGTGTAATTAGTCtgtttgttaaaattgtcaTCTTGTCTTTTTCTGACAATGGATTTATTGTCCtgataaaaacatgtttaacattCAATTTCATAACGGCCTCTGGAGGTAAATCTAAGGTCAGTCTCTCCCTTAGTCTTAGGTCAGGAAAGGATAGCGACCCAAATAAACTATTTGATGTATTATACTTTGGCTTAAAGACTAACATatgaccaaagaactgtgttttACCTTCTCAATGGTGTCTATGGAAAGCTAACCTGGCAGAAAAGGGATTTAGAACTGCAGGATGTTTGATAGAAGATGTATGTGGGGGTTATTTGGCCACAATATACCAGTGTTACGTAA

Function

symbol description
ap1s2 Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in membrane. Predicted to be part of membrane coat. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 5. Orthologous to human AP1S2 (adaptor related protein complex 1 subunit sigma 2).

NR:

description
AP-1 complex subunit sigma-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795195.1 True 2166 mRNA 0.40 5 18671352 18676489

Neighbor

gene id symbol gene type direction distance location
homer2 homer2 coding downstream 32131 18607469 ~ 18639221 (-)
LOC120555642 fsd2 coding downstream 86758 18575060 ~ 18584594 (-)
LOC120556233 LOC104953026,LOC102209912,LOC102302305,LOC101469394 coding downstream 189329 18471714 ~ 18482023 (-)
LOC120555694 LOC101077645 coding downstream 205271 18456550 ~ 18466081 (-)
usp8 usp8,LOC102785891 coding downstream 220333 18439582 ~ 18451019 (-)
LOC120556226 LOC103360767 coding upstream 22856 18699345 ~ 18705558 (-)
ppef1 NA coding upstream 29801 18706290 ~ 18718603 (-)
cdkl5 LOC106914639,LOC103143564,LOC106952012,LOC105934466,LOC101067260,LOC102215627 coding upstream 52287 18728776 ~ 18767719 (-)
nhsb nhs,LOC101481021,LOC104963549,LOC100699658,LOC102307289 coding upstream 124358 18800847 ~ 18868686 (-)
LOC120556456 NA coding upstream 214073 18890562 ~ 18897697 (-)
G28309 NA non-coding downstream 102275 18568101 ~ 18569077 (-)
G28302 pde8a,LOC104953025,LOC106596071,LOC108251619,LOC102210709 non-coding downstream 113133 18542458 ~ 18558219 (-)
G28291 NA non-coding downstream 173263 18497849 ~ 18498089 (-)
G28284 NA non-coding downstream 199902 18469813 ~ 18471450 (-)
G28267 NA non-coding downstream 284744 18385531 ~ 18386608 (-)
G28429 NA non-coding upstream 329419 19005908 ~ 19008421 (-)
G28437 NA non-coding upstream 360359 19036848 ~ 19037059 (-)
G28438 NA non-coding upstream 376835 19053324 ~ 19053869 (-)
G28442 NA non-coding upstream 386839 19063328 ~ 19063839 (-)
G28447 NA non-coding upstream 407813 19084302 ~ 19087065 (-)
LOC120556268 btbd1 other downstream 12693 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 250853 18416069 ~ 18420499 (-)
G28265 NA other downstream 287710 18382705 ~ 18383642 (-)
G28121 NA other downstream 450802 18218122 ~ 18220550 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other downstream 1069962 17599750 ~ 17601390 (-)
G28345 NA other upstream 42883 18719372 ~ 18720019 (-)
LOC120555695 NA other upstream 377602 19054091 ~ 19069996 (-)
LOC120555836 pcnp other upstream 447052 19123541 ~ 19126411 (-)
LOC120555658 NA other upstream 2903479 21579968 ~ 21583558 (-)
G28933 NA other upstream 2904553 21581042 ~ 21583498 (-)

Expression


Co-expression Network