spg21 (spg21,LOC102788283)


Basic Information

Item Value
gene id spg21
gene name spg21,LOC102788283
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13252165 ~ 13271218 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795201.1
TCTGTACAATGTAACAAAGAGGTTCCAAACCATAGTTTAAACCGTCTTtgactgtagctagctaacctcCATGGTGTAATGTGCTAACGTTGGcttgtgacagacagacagacagacacgcagacaggcaggcagtcagacaggcaggcagctgtgtgttgtgttgtaggCGGTGGCAGATTTGCGGAAGTGTGTGAAGCTGTAGTCATATGACCAGGCAGGCAGCCGGAGGAAATGGTACCTAGATATGGATAAAATCCCTCGGACACGGTGACTAACATCCACAACGAACACGATGGACGAGATTAAAGTGTCTCCTGACTATAACTGGTTCAGAAGCACAGTGCCTCTGAAAAGAATTATTGTTGATGACGATGACAGTAAGGTGTGGTCGCTGTACGACGCCGGCCCAAAGAGCATCCGCTGCCCCATCATCTTGCTCCCTCCAGTCAGTGGGACAGCCGAGGTGTTCTTCCAGCAGGTGCTGGCTTTGACGGGATGGGGCTACCGAGTCATCTCGCTGCAGTATCCGGTGTACTGGGATCTCATGGAGTTCTGCGACGGCTTCAGGAAGCTTCTCGATCACTTGCAGTTGGAtaaaGTCCATCtgttcggtgcatccctggggGGATTCTTGGCTCAGAAGTTTGCAGAGTGCACACACAAGTCTCCCAGAGTGCACTCGCTGATACTGTGTAATTCCTTCAGtgatacctccatctttaatcaGACGTGGACAGCCAACAGTTTCTGGTTGATGCCAGCTTTCATGTTGAAGAAGATTGTTTTGGGGAACTTTGCTAAAGGACCCGTGGACCCTAAAATGGCAGATGCAATCGACTTCATGGTTGAcagaTTGGAGAGTCTGAACCAAAGTGAGTTAGCATCGCGGCTAACACTCAACTGTCAGAACTCTTACGTGGAGCCGCACAAAATCAAAGATGTTGCTGTGACCATTATAGATGTGTTTGATCAGAGTGCTCTGTCGCTGGAGGCCAAGGAGGAGATGTATAAACTGTATCCTAACGCCAGACGGGCTCATCTGAAAACAGGAGGCAACTTCCCGTACCTGTGCAGGAGTGCTGAGGTCAACCTCTACATACAGATTCACCTGCGTCAGTTCCACGGGACGAGATACGCTGCCATCAGTCCTGCCATGGTGAGTGCTGAGGAGCTGGAGGTGCAGGAGCAGGGATCTGACCCCGACCAATGACACCACACTTCCTCAACACTTTCTCTCGCTCTTCAGCATTTCACAGGACTTTCTTCAATTTTTTATGGACCTCAACAGTCAATCAGCGAGTCAACTgagaatatttttatttaacagatGAAGCAATATTTTGATAATGACCTGTACATGGATTGTACTTGGCCGCTTTGCTTTAAAAACACTTTGCCTTATGTGGAATGAATTTGATAATCGTTGCACTCATAAACTGCCTGAACTGTTTGCCTCAAGTGTTCATTTCTATGTGTAATATATATTGTGCTTAACATGGTTTCCTGTTAACAGAAAGATGAACACTGGTTATGGAGACGTATATCTGAAAGTTTTTGTGTAATTCAAAGAgatgaaattgcatttttttccccGTTTGTTTTTGAATACAGTACCTTATTTTAAAATATCACATGTTCAGTTGTTATTTCCACTCATGTCACAGTGGGGAGCTGTCCTAAGGTTACACGTTGTGCCTGTGAGCAGTGTCTTCGTGAAGCCGTCCATCTGTTGAACTGCCAAAGCCTCAGCCACTAAAACACTTTCCAATCATAGGTCCAAGTCCACTACAACTACAGCCTGGGGGTTCATTCAGAGCTCCAAATGCTCCTGTAGTGATAACTgatcacttttctttctctgcttCTGAACACTTGTAGAATACGTGGTGTCCTGTGTCTTTGTATAAGATATGATGAAAACATGCTCTACACTGTGAAACATAATAATttcatttaatgtcactttCTAGCAGATGAATGTTGAAATCTGCTGTGTATATATGTCATGTACAACCAAGGAGGAATAGCAGAATGTGCTGCAAA
>XM_039795202.1
GCTCTGTACAATGTAACAAAGAGGTTCCAAACCATAGTTTAAACCGTCTTtgactgtagctagctaacctcCATGGTGTAATGTGCTAACGTTGGcttgtgacagacagacagacagacacgcagacaggcaggcagtcagacaggcaggcagctgtgtgttgtgttgtaggCGGTGGCAGATTTGCGGAAGTGTGTGAAGCTGTAGTCATATGACCAGGCAGGCAGCCGGAGGAAATGGTACCTAGATATGGATAAAATCCCTCGGACACGGTGACTAACATCCACAACGAACACGATGGACGAGATTAAAGTGTCTCCTGACTATAACTGTACAATGTGTGTGTCCCCAGATGGACGAGATTAAAGTGTCTCCTGACTATAACTGGTTCAGAAGCACAGTGCCTCTGAAAAGAATTATTGTTGATGACGATGACAGTAAGGTGTGGTCGCTGTACGACGCCGGCCCAAAGAGCATCCGCTGCCCCATCATCTTGCTCCCTCCAGTCAGTGGGACAGCCGAGGTGTTCTTCCAGCAGGTGCTGGCTTTGACGGGATGGGGCTACCGAGTCATCTCGCTGCAGTATCCGGTGTACTGGGATCTCATGGAGTTCTGCGACGGCTTCAGGAAGCTTCTCGATCACTTGCAGTTGGAtaaaGTCCATCtgttcggtgcatccctggggGGATTCTTGGCTCAGAAGTTTGCAGAGTGCACACACAAGTCTCCCAGAGTGCACTCGCTGATACTGTGTAATTCCTTCAGtgatacctccatctttaatcaGACGTGGACAGCCAACAGTTTCTGGTTGATGCCAGCTTTCATGTTGAAGAAGATTGTTTTGGGGAACTTTGCTAAAGGACCCGTGGACCCTAAAATGGCAGATGCAATCGACTTCATGGTTGAcagaTTGGAGAGTCTGAACCAAAGTGAGTTAGCATCGCGGCTAACACTCAACTGTCAGAACTCTTACGTGGAGCCGCACAAAATCAAAGATGTTGCTGTGACCATTATAGATGTGTTTGATCAGAGTGCTCTGTCGCTGGAGGCCAAGGAGGAGATGTATAAACTGTATCCTAACGCCAGACGGGCTCATCTGAAAACAGGAGGCAACTTCCCGTACCTGTGCAGGAGTGCTGAGGTCAACCTCTACATACAGATTCACCTGCGTCAGTTCCACGGGACGAGATACGCTGCCATCAGTCCTGCCATGGTGAGTGCTGAGGAGCTGGAGGTGCAGGAGCAGGGATCTGACCCCGACCAATGACACCACACTTCCTCAACACTTTCTCTCGCTCTTCAGCATTTCACAGGACTTTCTTCAATTTTTTATGGACCTCAACAGTCAATCAGCGAGTCAACTgagaatatttttatttaacagatGAAGCAATATTTTGATAATGACCTGTACATGGATTGTACTTGGCCGCTTTGCTTTAAAAACACTTTGCCTTATGTGGAATGAATTTGATAATCGTTGCACTCATAAACTGCCTGAACTGTTTGCCTCAAGTGTTCATTTCTATGTGTAATATATATTGTGCTTAACATGGTTTCCTGTTAACAGAAAGATGAACACTGGTTATGGAGACGTATATCTGAAAGTTTTTGTGTAATTCAAAGAgatgaaattgcatttttttccccGTTTGTTTTTGAATACAGTACCTTATTTTAAAATATCACATGTTCAGTTGTTATTTCCACTCATGTCACAGTGGGGAGCTGTCCTAAGGTTACACGTTGTGCCTGTGAGCAGTGTCTTCGTGAAGCCGTCCATCTGTTGAACTGCCAAAGCCTCAGCCACTAAAACACTTTCCAATCATAGGTCCAAGTCCACTACAACTACAGCCTGGGGGTTCATTCAGAGCTCCAAATGCTCCTGTAGTGATAACTgatcacttttctttctctgcttCTGAACACTTGTAGAATACGTGGTGTCCTGTGTCTTTGTATAAGATATGATGAAAACATGCTCTACACTGTGAAACATAATAATttcatttaatgtcactttCTAGCAGATGAATGTTGAAATCTGCTGTGTATATATGTCATGTACAACCAAGGAGGAATAGCAGAATGTGCTGCAAA
>XM_039795203.1
CGTTACCAACGAACACCAACAGCTAGCAGTTCAGCTAATATAACTGCGCCAGGTGTTTGTCTTTCTCTAACGCCAACAGCGGAATTAGTCAAGAGATGGACGAGATTAAAGTGTCTCCTGACTATAACTGGTTCAGAAGCACAGTGCCTCTGAAAAGAATTATTGTTGATGACGATGACAGTAAGGTGTGGTCGCTGTACGACGCCGGCCCAAAGAGCATCCGCTGCCCCATCATCTTGCTCCCTCCAGTCAGTGGGACAGCCGAGGTGTTCTTCCAGCAGGTGCTGGCTTTGACGGGATGGGGCTACCGAGTCATCTCGCTGCAGTATCCGGTGTACTGGGATCTCATGGAGTTCTGCGACGGCTTCAGGAAGCTTCTCGATCACTTGCAGTTGGAtaaaGTCCATCtgttcggtgcatccctggggGGATTCTTGGCTCAGAAGTTTGCAGAGTGCACACACAAGTCTCCCAGAGTGCACTCGCTGATACTGTGTAATTCCTTCAGtgatacctccatctttaatcaGACGTGGACAGCCAACAGTTTCTGGTTGATGCCAGCTTTCATGTTGAAGAAGATTGTTTTGGGGAACTTTGCTAAAGGACCCGTGGACCCTAAAATGGCAGATGCAATCGACTTCATGGTTGAcagaTTGGAGAGTCTGAACCAAAGTGAGTTAGCATCGCGGCTAACACTCAACTGTCAGAACTCTTACGTGGAGCCGCACAAAATCAAAGATGTTGCTGTGACCATTATAGATGTGTTTGATCAGAGTGCTCTGTCGCTGGAGGCCAAGGAGGAGATGTATAAACTGTATCCTAACGCCAGACGGGCTCATCTGAAAACAGGAGGCAACTTCCCGTACCTGTGCAGGAGTGCTGAGGTCAACCTCTACATACAGATTCACCTGCGTCAGTTCCACGGGACGAGATACGCTGCCATCAGTCCTGCCATGGTGAGTGCTGAGGAGCTGGAGGTGCAGGAGCAGGGATCTGACCCCGACCAATGACACCACACTTCCTCAACACTTTCTCTCGCTCTTCAGCATTTCACAGGACTTTCTTCAATTTTTTATGGACCTCAACAGTCAATCAGCGAGTCAACTgagaatatttttatttaacagatGAAGCAATATTTTGATAATGACCTGTACATGGATTGTACTTGGCCGCTTTGCTTTAAAAACACTTTGCCTTATGTGGAATGAATTTGATAATCGTTGCACTCATAAACTGCCTGAACTGTTTGCCTCAAGTGTTCATTTCTATGTGTAATATATATTGTGCTTAACATGGTTTCCTGTTAACAGAAAGATGAACACTGGTTATGGAGACGTATATCTGAAAGTTTTTGTGTAATTCAAAGAgatgaaattgcatttttttccccGTTTGTTTTTGAATACAGTACCTTATTTTAAAATATCACATGTTCAGTTGTTATTTCCACTCATGTCACAGTGGGGAGCTGTCCTAAGGTTACACGTTGTGCCTGTGAGCAGTGTCTTCGTGAAGCCGTCCATCTGTTGAACTGCCAAAGCCTCAGCCACTAAAACACTTTCCAATCATAGGTCCAAGTCCACTACAACTACAGCCTGGGGGTTCATTCAGAGCTCCAAATGCTCCTGTAGTGATAACTgatcacttttctttctctgcttCTGAACACTTGTAGAATACGTGGTGTCCTGTGTCTTTGTATAAGATATGATGAAAACATGCTCTACACTGTGAAACATAATAATttcatttaatgtcactttCTAGCAGATGAATGTTGAAATCTGCTGTGTATATATGTCATGTACAACCAAGGAGGAATAGCAGAATGTGCTGCAAA

Function

symbol description
spg21 Predicted to enable CD4 receptor binding activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol and trans-Golgi network transport vesicle. Human ortholog(s) of this gene implicated in Mast syndrome and hereditary spastic paraplegia. Orthologous to human SPG21 (SPG21 abhydrolase domain containing, maspardin).

NR:

description
PREDICTED: maspardin isoform X1

GO: NA

KEGG:

id description
K19367 SPG21; maspardin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795201.1 False 2046 mRNA 0.45 9 13252167 13271218
XM_039795202.1 True 2103 mRNA 0.45 9 13252165 13271218
XM_039795203.1 False 1846 mRNA 0.45 9 13252578 13271218

Neighbor

gene id symbol gene type direction distance location
kbtbd13 NA coding upstream 43830 13204839 ~ 13208335 (+)
si:cabz01068815.1 NA coding upstream 75762 13144507 ~ 13176403 (+)
LOC120556474 NA coding upstream 160730 13089535 ~ 13091435 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding upstream 180833 13065952 ~ 13071332 (+)
LOC120555527 NA coding upstream 689612 12556047 ~ 12562553 (+)
si:ch211-102l7.3 LOC102292170 coding downstream 406914 13678132 ~ 13696767 (+)
slc1a2a LOC104925837,LOC100698156,LOC102211357,LOC103366006,LOC104946114,LOC101471102 coding downstream 426428 13697646 ~ 13723065 (+)
LOC120556255 apip,LOC102794906 coding downstream 479198 13750416 ~ 13765627 (+)
traf6 LOC103361723 coding downstream 777073 14048291 ~ 14055494 (+)
cdkn1ca NA coding downstream 821646 14092864 ~ 14094321 (+)
G27129 NA non-coding upstream 4156 13246700 ~ 13248009 (+)
LOC120556095 NA non-coding upstream 49945 13201417 ~ 13202220 (+)
G27085 NA non-coding upstream 142975 13108962 ~ 13109190 (+)
G27081 NA non-coding upstream 155035 13096831 ~ 13097130 (+)
G27064 NA non-coding upstream 227349 13024501 ~ 13024816 (+)
G27161 NA non-coding downstream 107828 13379046 ~ 13381280 (+)
G27163 NA non-coding downstream 119938 13391156 ~ 13391364 (+)
G27164 NA non-coding downstream 130508 13401726 ~ 13401935 (+)
G27179 NA non-coding downstream 146719 13417937 ~ 13418154 (+)
G27190 NA non-coding downstream 379665 13650883 ~ 13651495 (+)
LOC120556202 NA other upstream 14346 13235235 ~ 13237819 (+)
G27086 NA other upstream 141826 13109757 ~ 13110339 (+)
lto1 oraov1 other upstream 1339443 11903272 ~ 11912722 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 3392165 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 3575138 9653578 ~ 9677027 (+)
slc35c1 slc35c1 other downstream 400259 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 538717 13809935 ~ 13856423 (+)
bbox1 bbox1,LOC102798250 other downstream 1437344 14708562 ~ 14735176 (+)
kcna4 kcna4 other downstream 1618172 14889390 ~ 14965062 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other downstream 1776659 15047877 ~ 15053622 (+)

Expression


Co-expression Network