scamp2l (scamp2,LOC106512987,LOC107381771)


Basic Information

Item Value
gene id scamp2l
gene name scamp2,LOC106512987,LOC107381771
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15872711 ~ 15884598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795208.1
GCGCAGTGGCCCAGTTTCACTAGCAGTGGCACCATCAGCAGGAGTAGCCACCGCCGCCGGGGAGACGGGAGCTGTCGTGTTGTTTATTTCACACAAGTTTATTTCTCTACAATGTCGGAATTTGACAGCAACCCCTTCGTGGACCCATTGGACATAAATCCCTTCCAGGATGCCTCAATCACTCAAGCCACCAGCGGAGCCCCTAAAAACGTTGGGGAGTTCAACCCATTCTCTGCAACTGAAATGGGAACCCACTCCGGCACGACCATCCCAATCTCTGCTGCCACCTCTCAACCCGCCATCCTACCGACTTCTGTGGAGCAGAGTGCACAACAGGCAAATGTAGCAGCTGGCCAGGCTAACCTGCTCAAAcagcaggaggagctggagaggAAAGCAGCTGAGCTGGAGCGGAAGGAGCAGGAGCTCCAGAACAGGACCGGAGGCAGAGCGCTCAACACTGGCGATAAAGAGAACAACTGGCCACCTCTTCCCAAATTCTTCCCTGTGAGGCCCTGCTTCTATCAGGACTTTGAGGGGGAAATCCCTGAGGAGTACCGCAGGATCTGCAAGAGAATGTACTACCTCTGGATGTTCCACAGTGCTACTCTCTTCCTCAACGTGCTGGCCTGCCTGGCTTACTTCACTGCAGACTCTCAGTACGGCGTCGACTTCGGTCTGTCCATCCTCTGGTTCATCCTCTTCACCCCAGTGTCCTTCGTCTGCTGGTACAGGCCCGTCTACAAGGCCTTCAGGTCTGACAGctccttcagcttcttcttcttcttttttgtctttttcttccaAGTGGCAGTGTACGTGATCCAGACTGTAGGGATTCCCAAGTGGGGAAATAGTGGATGGATCGCATCCATCAGCATGATCGGCACAAACTTGGCTGTGGCTGTGGTTATGATGGTGGTGGCCGGTTTTTTCACTGTAAACGCTGTCCTGGCTGTCATCCTACTGAAAATGGTCCACTCGAAGTACAGAAGGACAGGTGCCAGCTTCACCAAGGCCCAGCAGGAGTTCTCCACGGGAGTCCTGACCAACCGAACTGTCCAGACTGCTGCAGCCAGTGCTGCCCAGGGAGCCTTTGGCAATTAGAATGTTCCCCACATCCTTCGTGCTTCAGGCTAGTCTCTTCTCTGACCAACATAGCCATGACCCAACATACTTCAATGTGTTTAGGGGCTGGGGGTTTGATTATTTATTGAAAAGGGCCAAAAAAACAAGTAACTTATGAGGTGGCGATTTATTCTCACTACGTCAGCCGAGTGAAGTGTCTACATTCTCCACTTATAAACTTTTCAAGAGACTGTTGTATAATACAGAAGACGCGCTAGAGGTCTCATGCAAATGCGCAATGACTCTCGGTTGTTATTGAGTCTTTACCATCTTCATCAGTATACAGCAAAATGTATGCCATCAACAGTTATTCTGGGACATGTAGGAAGGAGTAAGAAAACTGAAGTTGAATAAAACAAGGCCAAGAAGGAGGCACAGTGGGTATGACAAAAATGAATTGACAACACCAATAATCACAATATAACTAACTGGAATACATTTAACATAGTAAACTGAAGTATGTGCGGCGCACCACTGAACAGGGCTGGGGTTTAGTGATaaagtacatttatttaaacccCGTCACTCTTAAATATGCTGGCTGAAAGTATTAGGATTTCTCTATTTCACAGTTCATGTAGAAATAACATACTGGGGCCTCGAAAATAAACACTGCGAAGAGTGGGGATTATATAAAAAGCATACTTGATATGAGAATGTTTTACCATCATTCAATGATGGATCCACGTAACGTGTGTatacatatttttgtcattACAGCAGCACGGAGAGCGTTACAGGGTTACCATTCTATCATTCTGCTTCATAAACATGTTTAATACATGCACTATTGGATGTCCTGTAAGAATCATCCATCCTACACTACTGATGAACACCGTTGCTGTTCGAATTTCGCTCTAAATTTGTTTTCATGTGCATATAACACTGTATAGGATGATGATTAATGAAGGTGACGGGATGGTGGAAGGTGTTTCTTTCTACTGGTTTCATCAGTTTACcgatttagatgaagtgagacAAAAAGCTCTTCTTCGGGCAATTGAAGACGTAGTTTAACAGCGacattttaatttatgtttAGTTAAGAATATGTTTTTAGGTATAGTATGGATCCTTGCTGTGATTAAAATGAAATGCAGGGTGCAGGTTTACTAATGTAAAGTTACTGACATAGTATAGAATGTAGACTTATTTACTTAGAAGTGTATTAATGAGCAGAAAGAACACAATATCTGTCGATTATCCAGTCTTGACTTTATATTCATGGTAATTATACTGCAGAACAAAGTCACGTGTTACTGAATAGTCGCAGAtagtttgtatttcttttttagcTGCTTTCTACCTACTTGTGTTTTGGTATtagcatttttttcacatatttacttgtgaatatatatatatgctgtccAATTCTGATCTTTTGTTACTGTAACACACTGAATCACTTTGTTTAGGTGTAACCTCACTCAGTGCCTTTCAGCAGATCGTAACCCACCGATTTTTACGCGGGGATTTAAGCACAAGGCTGTTGGTTAGTGTTTTGTCTGATTTCCTTTGTCTTAATAGAGAAACGTGTTTTATGGTGATGTTTCCCTTCGATGATCAATGAATGTATTAAGGTGTGTTGTACATATTGGTGacttatttaaaacataatttactggggggaggggggtattTGGGGGGAAAATTGGTTCTCAGTCTTAACataaataaactgtaatttttttcatcttttgaaAATGTACATCGTGTAAAGGATTGCCTGCTAAGTAAAGACATATattcatactgtacataccaAATGTCTTAGCTACATGATGTAAAATACACGTAGACACACGCCTATGATGTAGCTGTGTAAATGTGTAGCTAGAGAACAAGGAGGTTATGTTCCCTGTGAGTCAGCTACACTTGTTCTCTGTTGTTAGAAGCAACGTTATCATTATTCTCAATCGTGTTCCTAATGGACATGAATGGATCTGTTCACTGTGCAGAGGTACAAAACAATTGACTCCATAATCAGTATGAAGAAATTGGTGACTTAATtgcatgtatgttttaaaaatgtaagcagGAAGTATCAAA
>XM_039795209.1
TGCGCAGTGGCCCAGTTTCACTAGCAGTGGCACCATCAGCAGGAGTAGCCACCGCCGCCGGGGAGACGGGAGCTGTCGTGTTGTTTATTTCACACAAGTTTATTTCTCTACAATGTCGGAATTTGACAGCAACCCCTTCGTGGACCCATTGGACATAAATCCCTTCCAGGATGCCTCAATCACTCAAGCCACCAGCGGAGCCCCTAAAAACGTTGGGGAGTTCAACCCATTCTCTGCAACTGAAATGGGAACCCACTCCGGCACGACCATCCCAATCTCTGCTGCCACCTCTCAACCCGCCATCCTACCGACTTCTGTGGAGCAGAGTGCACAAGCAAATGTAGCAGCTGGCCAGGCTAACCTGCTCAAAcagcaggaggagctggagaggAAAGCAGCTGAGCTGGAGCGGAAGGAGCAGGAGCTCCAGAACAGGACCGGAGGCAGAGCGCTCAACACTGGCGATAAAGAGAACAACTGGCCACCTCTTCCCAAATTCTTCCCTGTGAGGCCCTGCTTCTATCAGGACTTTGAGGGGGAAATCCCTGAGGAGTACCGCAGGATCTGCAAGAGAATGTACTACCTCTGGATGTTCCACAGTGCTACTCTCTTCCTCAACGTGCTGGCCTGCCTGGCTTACTTCACTGCAGACTCTCAGTACGGCGTCGACTTCGGTCTGTCCATCCTCTGGTTCATCCTCTTCACCCCAGTGTCCTTCGTCTGCTGGTACAGGCCCGTCTACAAGGCCTTCAGGTCTGACAGctccttcagcttcttcttcttcttttttgtctttttcttccaAGTGGCAGTGTACGTGATCCAGACTGTAGGGATTCCCAAGTGGGGAAATAGTGGATGGATCGCATCCATCAGCATGATCGGCACAAACTTGGCTGTGGCTGTGGTTATGATGGTGGTGGCCGGTTTTTTCACTGTAAACGCTGTCCTGGCTGTCATCCTACTGAAAATGGTCCACTCGAAGTACAGAAGGACAGGTGCCAGCTTCACCAAGGCCCAGCAGGAGTTCTCCACGGGAGTCCTGACCAACCGAACTGTCCAGACTGCTGCAGCCAGTGCTGCCCAGGGAGCCTTTGGCAATTAGAATGTTCCCCACATCCTTCGTGCTTCAGGCTAGTCTCTTCTCTGACCAACATAGCCATGACCCAACATACTTCAATGTGTTTAGGGGCTGGGGGTTTGATTATTTATTGAAAAGGGCCAAAAAAACAAGTAACTTATGAGGTGGCGATTTATTCTCACTACGTCAGCCGAGTGAAGTGTCTACATTCTCCACTTATAAACTTTTCAAGAGACTGTTGTATAATACAGAAGACGCGCTAGAGGTCTCATGCAAATGCGCAATGACTCTCGGTTGTTATTGAGTCTTTACCATCTTCATCAGTATACAGCAAAATGTATGCCATCAACAGTTATTCTGGGACATGTAGGAAGGAGTAAGAAAACTGAAGTTGAATAAAACAAGGCCAAGAAGGAGGCACAGTGGGTATGACAAAAATGAATTGACAACACCAATAATCACAATATAACTAACTGGAATACATTTAACATAGTAAACTGAAGTATGTGCGGCGCACCACTGAACAGGGCTGGGGTTTAGTGATaaagtacatttatttaaacccCGTCACTCTTAAATATGCTGGCTGAAAGTATTAGGATTTCTCTATTTCACAGTTCATGTAGAAATAACATACTGGGGCCTCGAAAATAAACACTGCGAAGAGTGGGGATTATATAAAAAGCATACTTGATATGAGAATGTTTTACCATCATTCAATGATGGATCCACGTAACGTGTGTatacatatttttgtcattACAGCAGCACGGAGAGCGTTACAGGGTTACCATTCTATCATTCTGCTTCATAAACATGTTTAATACATGCACTATTGGATGTCCTGTAAGAATCATCCATCCTACACTACTGATGAACACCGTTGCTGTTCGAATTTCGCTCTAAATTTGTTTTCATGTGCATATAACACTGTATAGGATGATGATTAATGAAGGTGACGGGATGGTGGAAGGTGTTTCTTTCTACTGGTTTCATCAGTTTACcgatttagatgaagtgagacAAAAAGCTCTTCTTCGGGCAATTGAAGACGTAGTTTAACAGCGacattttaatttatgtttAGTTAAGAATATGTTTTTAGGTATAGTATGGATCCTTGCTGTGATTAAAATGAAATGCAGGGTGCAGGTTTACTAATGTAAAGTTACTGACATAGTATAGAATGTAGACTTATTTACTTAGAAGTGTATTAATGAGCAGAAAGAACACAATATCTGTCGATTATCCAGTCTTGACTTTATATTCATGGTAATTATACTGCAGAACAAAGTCACGTGTTACTGAATAGTCGCAGAtagtttgtatttcttttttagcTGCTTTCTACCTACTTGTGTTTTGGTATtagcatttttttcacatatttacttgtgaatatatatatatgctgtccAATTCTGATCTTTTGTTACTGTAACACACTGAATCACTTTGTTTAGGTGTAACCTCACTCAGTGCCTTTCAGCAGATCGTAACCCACCGATTTTTACGCGGGGATTTAAGCACAAGGCTGTTGGTTAGTGTTTTGTCTGATTTCCTTTGTCTTAATAGAGAAACGTGTTTTATGGTGATGTTTCCCTTCGATGATCAATGAATGTATTAAGGTGTGTTGTACATATTGGTGacttatttaaaacataatttactggggggaggggggtattTGGGGGGAAAATTGGTTCTCAGTCTTAACataaataaactgtaatttttttcatcttttgaaAATGTACATCGTGTAAAGGATTGCCTGCTAAGTAAAGACATATattcatactgtacataccaAATGTCTTAGCTACATGATGTAAAATACACGTAGACACACGCCTATGATGTAGCTGTGTAAATGTGTAGCTAGAGAACAAGGAGGTTATGTTCCCTGTGAGTCAGCTACACTTGTTCTCTGTTGTTAGAAGCAACGTTATCATTATTCTCAATCGTGTTCCTAATGGACATGAATGGATCTGTTCACTGTGCAGAGGTACAAAACAATTGACTCCATAATCAGTATGAAGAAATTGGTGACTTAATtgcatgtatgttttaaaaatgtaagcagGAAGTATCAAA

Function

symbol description
scamp2 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP2 (secretory carrier membrane protein 2).

NR:

description
PREDICTED: secretory carrier-associated membrane protein 2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795208.1 True 3180 mRNA 0.43 9 15872711 15884597
XM_039795209.1 False 3178 mRNA 0.43 9 15872711 15884598

Neighbor

gene id symbol gene type direction distance location
bbs4 bbs4,LOC102786181 coding downstream 270 15856715 ~ 15872441 (-)
neo1a NA coding downstream 85343 15599975 ~ 15787368 (-)
LOC120556584 NA coding downstream 232751 15639769 ~ 15639960 (-)
LOC120555812 snx1,LOC102784823 coding downstream 280855 15580040 ~ 15591856 (-)
csnk1g1 csnk1g1,LOC103370372 coding downstream 294619 15536974 ~ 15578092 (-)
myo9aa myo9a coding upstream 2413 15887011 ~ 16017712 (-)
gramd2aa gramd2,LOC102079700,LOC101472756 coding upstream 147072 16031670 ~ 16068535 (-)
trip4 trip4,LOC102789106 coding upstream 283877 16168475 ~ 16254605 (-)
LOC120556157 chrna7 coding upstream 376296 16260894 ~ 16294060 (-)
itga11a itga11 coding upstream 535265 16419863 ~ 16492643 (-)
LOC120555431 NA non-coding downstream 24012 15818610 ~ 15848699 (-)
G27594 NA non-coding downstream 275844 15596613 ~ 15596867 (-)
G27587 NA non-coding downstream 325920 15546578 ~ 15546791 (-)
G27582 NA non-coding downstream 337374 15534000 ~ 15535337 (-)
G27554 NA non-coding downstream 386246 15483110 ~ 15486465 (-)
G27659 NA non-coding upstream 144289 16028887 ~ 16029172 (-)
G27698 NA non-coding upstream 282361 16166959 ~ 16168421 (-)
G27725 NA non-coding upstream 502298 16386896 ~ 16387172 (-)
G27729 NA non-coding upstream 524872 16409470 ~ 16409936 (-)
G27767 NA non-coding upstream 672935 16557533 ~ 16558521 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 793881 15050662 ~ 15078830 (-)
G27420 NA other downstream 1028806 14842713 ~ 14843905 (-)
LOC120556476 NA other downstream 1292700 14578027 ~ 14580011 (-)
G27321 NA other downstream 1402366 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 2776945 13069996 ~ 13095766 (-)
LOC120556162 znf609 other upstream 186971 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 437365 16321963 ~ 16408868 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other upstream 1308915 17193513 ~ 17284509 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 1623525 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 1715152 17599750 ~ 17601390 (-)

Expression


Co-expression Network