chsy1 (chsy1)


Basic Information

Item Value
gene id chsy1
gene name chsy1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10127978 ~ 10231722 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795210.1
GCCCGTTGAGTCAAAACCACTGTTAAACCCTTCGCGATCAGCGATCTCGACAGTCAGACATTCTTCCAGTGGCGAGATAATGGCGAGAATGGGGCCGCTATTTAAGGCAAAGAAAGAAACTGCTGCATTTGTCGACCGGCGTTGAAGTTTGCCGATGGTCTATAGTGGGACAGTTTGATGAGCAGATGAAGCATCGGCAGAGAACGGTTCAGGTGGCAGTTTCAAGGAGACTGCTGTGATGCTACGTAGGCAACTGGAAGAAAAGCGCTTTTCTActatgagagagtgtgtgtgagcccGGTTTTTCTTGAGCCATAGGAGCCCAACTACCtatctgttttttgttgttttattcaatttttttaaatttttttttgttaatggtTATTTTTTAAGACGCGCTGACTTAGGATACAGCGAGGATACACAGTGTGCTGGTGAAGTTTTGGGGAATGGCAGGTCGAAGCCGAAGAGCATGGTTTAGTGTTCTGTTGGGACTGGTTGTCGGGTTCACTCTGGCTTCCAGACTCATCTTACCCAAGGCGACCGAGTTGAAGAAAGCTGGACAAAAACGAAAGGCAAACCCTGCCGGCTGTGGGTTAAACGGGGGTCACAGAGAGGAATACGGCGGAGTACTGTGGCCACCTCAAGATAACGGTTCACCGGCGACCGAGAAACCTGGCTCCAGGTCCAATAATTTCCTGTTCGTTGGTGTCATGACTGCCCAGAAGTACCTGAGTAGCCGAGCCGTAGCGGCACATAGgACATGGGCACAGACAATTCCAGGTCGCGTGGAGTTCTTCTCCAGCGAGGGCTCTGACACCTCCATACCCATTCCCATAGTGGCTCTGAGGAATGTGGATGACTCGTACCCACCACAGAAAAAGTCCTTCATGATGCTCAAGTACATGCATGACCATTATCTGGACAAGTACGAGTGGTTTATGAGGGCCGATGACGATGTCTACATCAAGAGTGACAGGCTAGAGAGCTTCCTGCGCAGCCTCAACAGTAGCGAGGCCATCTTCCTGGGCCAAACCGGCATGGGAGCTCGGGACGAGCTGGGGAAGCTGGCCCTGGAGCCTGGGGAGAACTTCTGCATGGGGGGCCCGGGGGTTATCATGAGCCGCGAGGTCCTCAAGAGGATGGTGCCCCACATACGAGAGTGTCTACAGGAGATGTACACCACCCATGAGGACGTGGAGGTGGGCCGGTGTGTCAGGAGGTTTGCCGGGGTGCAGTGTGTCTGGTCATATGAGATGCAGCAGCTCTTCTATGAGAACTATGAACCAAATAAGAAGGGCTACATACGAGATCTCCACAATAGCAAGATCCATCGAGCCATCACTCTCCACCCAAACAAGAACCCTCCTTACCAGTATCGCCTACACAGCTATATGCTCAGCCGGAAAATCGCAGACCTGCGCCACCGAACCATTCAGCTCCACCGGGAGATCGTTCAGATGGGGCGCTACGGAGCAAATGAGCCGAGTCGAGAGGATCTCCAGCTTGGCATGCCGCCTTCATTTATGCGCTTCCACCCACGGCAGAGAGAGGAGGTCCTGGAGTGGGAGTTCCTGACAGGGAAGTACCTGTTCTCATCGTCTGATGGTCAGCCGCCCCGCCGCGGGATGGATTCCTCCCAGAGACAAGCCCTGGATGACATCATCATGCAAGTGATGGAGATGATCAACGCCAATGCCAAGACACGGGGACGGGTCATTGACTTCAAAGAAATACAGTATGGCTACCGGAGAGTCAATCCTTTATACGGGGCAGAGTATGTGCTGGATCTACTGCTGCTGTACAAGAAGCACAAAGGAAAGACAATGACAGTCCCTGTGAGGAGGCATGCCTACCTGCAGCAGACCTTTAGCCAGATACAGTTCAGAGAGGAGGGGGAAATGGATGCCAGAGCTCTGGCCAGCCACATCAACAAGGACTCAGACTCTCTCTCATTTCTGTCCAATTCCCTTAAGATGCTGGTGCCCTTCAAGCTGGCCACCTCTGGCCAGGACCAAAGGGAACCGAAAGAGAAGAAAGTCAACATCTTGGTACCTCTGTCGGGACGCTATGACATCTTTGTGCGCTTCATGGCCAACTTTGAACGAGTCTGTCTGATCCCCAACCAGAATGTCAAGCTGCTGATCCTGCTTTTCAGCACAGACAACAACACAGAGCGGGTCAAGCAGGTGGAGCTGATGCGGGAGTATCACATGAAGTATCCCCGGGCCGAGATGGAGATAAAACCTGTCACCGGCTCCTTCTCCAGGGCTCTGGCTTTGGAAGTGGGTTCCTTGCACTTCTCTAACGATTCACTGCTCTTCTACTGTGACGTGGATCTGCTCTTCACCAGTGACTTTCTCAAGCGTTGTCGGACCAATACAGCCCTGGGGGAGCAAACCTACTTCCCCATCATCTTCAGCCAGTATGACCCAAAGGTGGTGTACGCTGGGAAGGTCCCTAGTAACAACCACTACGTCTTTACGTCCAAGACAGGTCTGTGGAGAAACTACGGCTTTGGGATTGTCTGTGTTTACAAGGGAGACTTGGTTCGAGCTGGAGGCTTTGATACCTCTATACAGGGGTGGGGATTGGAGGATGTGgacctttttaataaatttgtcCAGTCAGGGATCAAGTTGTTCAGAAGCACAGACACAGGGATAGTGCATGTTCATCACCCCGTCATATGTGACCCCAACCTGGAGGCAAAGCAATATAAGATGTGCCTGGGCTCCAAAGCCTCGTCGCACGGCTCCACCCAGCAGCTGGCTGAGCTCTGGCTGGAGAAGAATGACCATGGCTTCAGAAGACTGGCCAGCAATAACGGCTCAGTTAGGACAGCGTGAGAAAAGCCGGGCTACAGACTATCATAAACTGAAAACTGAACCCGGTCTGTGCTCACTGCGTGGTGTTTTCACTacctaatttattttttactgaaaTGAAAGATTTCACATGGATATATTTTGAAAATATGTCTACAGAAACGCCATGATAAACAATTCTTAGAGACCATCTGGGAAGTTCATGTTTTGATTAATGATCGGATGAATATCGACCAAAATTCTTTTGTGAGCCTGATTACAGCAGAGGCCAGAGGCTCCTTGTTACATTTTATCTGTCAGGACAGTGGGAGAAGTGCAGACAGGGGCTATTAATGTGTACCTCAATGAAGTACACCCTCGTGGTCATTAAATATACCATTTGTCCTGTGTGCAGAAAACAGACTGGTGTCCAGCAGCGCTCCAAACTGAACTCAACTTTTGATTGTGAATGTTTACAAAAGACTGATTGTCAACATTTCATCAATGGAAAAACTCCAATCACAGCTATCCCAATGATTACTAATTTCATTAGATATTTTAATTTACAGTGGTTTTCTTTTCCATTTGCTTTTATGGTTTTGGTAATATGACACAAcactgtttttgtatttttctttattattattttctgtgaaCCCAACTGCTGGATTTTATATCTGCAATTCATCTTTTGCTGTCTAATTTATTGAATTTGCAGGCTCCATTTTCTACTCTCTGACTCTTGAAATATGTATATTGGAAAGATTGTATAACCATGTCAGTTGTGggatgatatttttttttttttctttttttaactcattATCACCAAAGAGTTCTGCTTTAGGTATCAtgttgtgtgcgtgcgtgcgtgcgtgtgtgtgttttgtaggcACAAACATGAAACTGACTGTATTATTGAGAGAACACAAAAGCTTGATCTATCCCAGGCCTTTCTGATGGGTAAAGTGGGAACAAGTCTGGCCTGTATTCCAGTGGGTTGAAATGGGAGCAGCACTCTGGTCGGCCAGCTCAAGTCCCACGTTTCTTTTTATAAATGACTTTATTTTATGTTAATATAGAAAGTGTTGTGGCTGGTCCCAGTCTACAGAGGTGTGGCTGCAATGCTGACCTTATTGAGCTATGATGTGAAATCCCACATTGTCTGGTCCTTTTGTTACAGGTTTGAGGGCAGAACATTTCCTCATTGGCAGGCCTGAATCGCTGTCCTGCTCCTGCCTGTGTTGCGCACGGGCAGGTACTGTACGTTGTAGCACTCCGTCGGATTAATGCTCCTCTTTTAGCATTACAATATGAATGGCTGATTTTAAGACTGTTGTAACAGGATGAATGACTGTGTTGTCATAAtagtattttttaattttttttttctttccaactCTGTCCAACTGGGCAAGGTtttctatttaaaaataaataaaatggggGGAAAGGTTCAAAATC

Function

symbol description
chsy1 Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Acts upstream of or within several processes, including animal organ morphogenesis; chondroitin sulfate proteoglycan biosynthetic process; and pectoral fin development. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cranium; forerunner cell group; inner ear; optic primordium; and pectoral fin bud. Human ortholog(s) of this gene implicated in temtamy preaxial brachydactyly syndrome. Orthologous to human CHSY1 (chondroitin sulfate synthase 1).

NR:

description
PREDICTED: chondroitin sulfate synthase 1

GO: NA

KEGG:

id description
K13499 CHSY; chondroitin sulfate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795210.1 True 4274 mRNA 0.47 3 10127978 10231722

Neighbor

gene id symbol gene type direction distance location
fah fah coding downstream 802690 9308597 ~ 9325288 (-)
arnt2 arnt2 coding downstream 898401 9153242 ~ 9229577 (-)
LOC120555843 LOC104937892 coding downstream 2821648 7304084 ~ 7306330 (-)
LOC120555919 NA coding downstream 3075501 7045853 ~ 7052477 (-)
hdgfl3 LOC103366351,LOC102309090,LOC101465811,LOC100694012,LOC106907470 coding downstream 3085837 7028566 ~ 7042141 (-)
selenos NA coding upstream 1742 10233464 ~ 10241227 (-)
zgc:113274 NA coding upstream 12402 10244124 ~ 10245386 (-)
snrpa1 snrpa1 coding upstream 27509 10259231 ~ 10292924 (-)
ano9b ano9,LOC103369658,LOC100691858,LOC102197938 coding upstream 409216 10640938 ~ 10731901 (-)
LOC120555515 NA coding upstream 514139 10745861 ~ 10750166 (-)
G26467 NA non-coding downstream 788 10126830 ~ 10127190 (-)
G26461 NA non-coding downstream 5369 10122398 ~ 10122609 (-)
G26455 NA non-coding downstream 24813 10102920 ~ 10103165 (-)
G26454 NA non-coding downstream 26411 10100237 ~ 10101567 (-)
G26390 NA non-coding downstream 349256 9778274 ~ 9778722 (-)
G26506 NA non-coding upstream 83846 10315568 ~ 10316079 (-)
G26507 NA non-coding upstream 85026 10316748 ~ 10317126 (-)
G26510 NA non-coding upstream 133098 10364820 ~ 10365176 (-)
G26515 NA non-coding upstream 155206 10386928 ~ 10387201 (-)
LOC120556222 NA non-coding upstream 159254 10390976 ~ 10402234 (-)
G26298 NA other downstream 831232 9295068 ~ 9296746 (-)
LOC120555589 cemip other downstream 1148834 8759601 ~ 8979144 (-)
tlnrd1 mesdc1 other downstream 1369170 8733419 ~ 8758808 (-)
il16 LOC102796330 other downstream 1430356 8630608 ~ 8697622 (-)
LOC120555934 NA other downstream 1631343 8494353 ~ 8496635 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other upstream 1244784 11476506 ~ 11510300 (-)
LOC120555651 NA other upstream 1411509 11643231 ~ 11669269 (-)
G26891 NA other upstream 1728979 11960701 ~ 11961772 (-)
G26924 LOC108281047 other upstream 2072817 12304539 ~ 12304824 (-)
G27075 LOC104939823,LOC100707594 other upstream 2838274 13069996 ~ 13095766 (-)

Expression


Co-expression Network