abhd17c (abhd17c,LOC102793890,LOC100694079)


Basic Information

Item Value
gene id abhd17c
gene name abhd17c,LOC102793890,LOC100694079
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9056333 ~ 9091510 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795212.1
TTGTCTACATTCTAGAGAAATGGCTATTCTCATTCGTACAACATTAGCAAGAAATCTTGATGTATAGCAACTAATGTGTTTCAAGGGCGGATTTGTTCTATCGAGACTCGTCGCTGCACTGTTTTGTGCTATAAAATAACATGAACTTAAAGGTTGCGTTTTAGTTGGTGTCTAATTTATATGTAACGTTAGTCTTAGTTTTGCTGTTAGCCAGCTACCTAACGTTAGCTGCCAGTTCGCTAGCGCGTTAGCTGCCAAGCCGAGAGACCGAGCCATCGGTCATCTAGCTGCTGTTCGTTAGAGTCTgttaatgagaaataaatagGACATCATACCAAAAGAGAAttgtctttttgtttcattAGAAGATAATTGGCCGGGTTAATTGACCCGCTCCTAAATGCCCGAACAAGGCCCTAGGATGAATGGGTTTTCTCTCGGCGAACTATGCTGGCTGTTCTGTTGTCCGCCTTGTCCGAGTCGCATCGCGTCCAAGCTAGCTTTCCTCCCACCGGAGCCCACGTACTCTGTGCACGCCGATGCTAACGGGGTAACTAGCTTACATTTAACCGAACGGGCGGACTGGCAGTACTCTCAGCGAGAGCTCGATGCAGTGGAAGTGTTTACCACCAGAAGCAGTCGGGGTAACCGGGTTGGGTGTATGTTTGTGCGTTGCGCCCCGAACAGTCGGTACACGCTGCTGTTTTCCCACGGTAACGCCGTGGACCTTGGGCAGATGTGCAGTTTTTACATCGGCCTCGGCTCCAGGATCAACTGCAACGTGTTCTCCTACGATTACTCAGGCTACGGAGTCAGCACCGGCAAGCCCTCTGAGAAGAACCTGTATGCGGACATCGAGGCGGCCTGGCAGGTCCTGAGAAACAAGTATGGTGTACCACCTGAGAACATCATCCTGTACGGTCAGAGTATCGGCACTGTGCCCACTATCGACCTGGCTGCTCGCTATGAATGTGCTGCTGTCATCCTCCACTCCCCACTCATGTCAGGGCTACGGGTGGCCTTCCCCGATACACGCAAGACCTACTGCTTTGATGCCTTCCccagTATTGACAAGGTGTCCAAAGTGGCGTCTCCAGTGCTTGTGATCCACGGCACGGAAGACGAGGTGATTGATTTCTCCCACGGCCTGGCCATGTACGAGCGCTGCCCCCGTGCCGTCGAGCCCCTGTGGGTTGAGGGAGCCGGCCACAACGACATTGAACTGTACGCCCAGTACCTGGAGAGACTCAAGCAGTTCATCTCCTTTGAGCTTCCCACATCCTGAGGGGAGCTCAGCACTCACAGGCCAGGGTTCATCTCAACACAGAAGCCGCCTCCTTATCATCTCCTAACTTCCTCTCTTAGCATAGGGGCAGGCGTGGAGTCAGCTCATCACTGTTCTGCCCTGTCCTCGGAGCCATTTCAGGGTGGAAATGTGTAGTGGACCGGAAGAGGAGGGGGGTTTAGATTGTTGAGGTGCAGCCGAGAGTCAGTGGCCATCACTGGCCAGGAGTGAAGCTTTGGCTTAACGTACTGTCCCCAAAAACCTGGCTGGTGCTTCTACACGTGGACACAGTTTGCCAATGAGCCAAGGCCTAGGCAGCGTTTGCACTCGCAGCTCAGTCTGGATTAATTTCTCAACTCCAgctctccttcccttcctctacTCACTCCGTCTCCCTGAGCTTTTTAGTGCCAGTGTCTCTCACTGTCATCTTCTGTCAcatttcctcctccttcttttcCTCTGTTTCGCCCACAATCCTTGCTTTTCTTTTGACCAAGTCTGCAATGTTGAAGCTtgatttttgtattcttttatACCAGGTGAAGAAGTATCAATTTTGCACCTTGAGATACACTTGaagttttttactttttctgtatttttaagtTAACATTCAGGGGTTACAAACCGATTGCACTTTTAATGTGCAGATATTTTCAGgtaatgatttttttctgtttggatATGTATATGTTGATTTAGTTTATCTGCATTCCATGTTTTTCTTAATTGCAGGTAGAActtttttcagtgtgtgtgtgtgtgtgtgtgtttagaagCTGTTAACCCAGAGTGCACCCCTGCACATCTGGCCTTTGTAGCTGTGATCTTTCTAGTCCTCATGCATGCTACTCTCTCATACAGGAAGACAATAATGCCAAACTTTGTTGAGAAATCGCAATTTACAAAATGCCTGGCACACTGGTGCAATACTGTAAGAAAATGACTCAAGTCCTTGAATACTTTGGAGCCAGTGGTAAATTCACCATACAGACAACACTTTCATTACTTACAGATTTTGCCTATTCACAATAATTGTACAGATGGTACACTTTGAAAGGCTGTGGTAAAGAGCAATGTGAACCTGAAGTGTTTATTAAAATACATTGTGATTGGTGGAACATCTATATGCAAAATCTAATGCTGAATTTACCAGAGGACCCCAACGATTTGTGAAATGCTTTAACAGGTCATTGAGTAAACAGATTTTATCAACCTATGTTGCATACTATAAAAACCCCTCTAGACATCTGGTGAAGCCaatgttgaagaaaaaaattgcCCCATAACCCACAGTCTAATTAGCGTGGTCATTTTGTGCACATTGTGTATGGATCAAAATTCTCACTTATCGTTTATGTAAATATTGTATCACACCAGGTGTGTACCTTGTCACTAAGCAACACACCAATGAATATCCCAAATGTTTGGTAATACAGAAGCTTACCTCAGTAGAAGAGAGCCGTGGGTTAACTGGAGATCATGTGGTAATAAGACTTGACAACTGATTCAAAGATAAACACATTTGACTCAGTACCGTAAAGTGAAGCCATGGAGCACAGGGCTGGATCTACCTATAGACCGAAGACACAGAACTTTGCTGTCGCTGGGTGTTATCAGTCACTTCACACTACAAATAAAGCCTTATGTAAACATTTCACCCAGTCCTGTTGACTACAGCAGAGCTTTGGTGGTCTTCACGGGGACTGATAACTGCTGCTATTCATCAGAGAAGTCAATcataggggtgtcacgattctccaaatccaagATTCGATTCATTTTCTATacccgttttttttatttagacttttttttccccaacagaGATGGCCGCAGTGCCACAATAAGAGCCACAGGAGGGACTTTgcaacaacagtttgagtttctcagagtttaTGAGGTGTAATTGAATGCACTGTTAGCGTAACAGGGTGCACATAAATGACTCATTGACTCCGGTCTGAGCCAGGCCCCGAGGAACAGTTCTCAGCCTTGCAGCCCCAAAATGGATTTTCCCCGATACGCCACCATTGTAAAAGAGAAGTCTGTATATCTGCGCCAGGACACCTGGAACTGCAAAAGGTTTATTATGACTTTCTTTACTGAATTTTTTAatccatgactttttttatttgaaaaacttCCCTATTACAATGTAAAGTCTATGGGCCGGGCGGGGCTAGCAGGAGAAACACTACTGCGCATTTTCAGTGGGCCGCAGATCACGGAAGTAAACCCAGAAGCTTAGAAATGTTTTTGGCATGAGTCAGGCGAGCAACTCTATTAAACTGAATAGGCAATCCAGTATCCAGttaatataatacatccatggtcgtAGCCCACATGCCTTACCTTCGTTGTTTGTTTCCATAACTCCCTTACAGGCAGCTGCAGGCAACCGCTAAGCTAACCTTACCccgtgtctttagctgcatgctaccagccgctAAGCTAaagttaccctgtgtctttagctgcatgctaccagcagctaagctaacgttaccccgTGTCTATAGCTGCATGCTACTAGCCGGTAAGCTAACATtgccctgtgtctttagctacaTGCTACCAGCTGGTAAGCTACAGTGTCTGTTTTTTCGCCAATCCTGCTTTTGATCTTGAAtcgaaatcgtgacaccccAAGTCAATCACTGTGAAAGCCAGACCGTTTGGGGAATACTGAAATGACAGCAAGGTACTAAAACCAAATTCAGCCTGACAACTCTCATGTCCTTTTGTCAGCCATGGGCTACTACCAACACTTGTCTGCTGAGCCCTGTGATAGTTTTGCTCTTATCCCAGCTCGAACTCCAAAGACAATCTGACAGAACCACGATGGGGAAACGGAATGCTGTGGAATTAAGCAACGCATGCAAATCACCTCTCATAGTTGTGGACATTTGAACTTCTATCAACtgtattttaataatttgttCTTTCCCCTCCTTGCAAAGTCAAACACTAAAAACTGTAGTAAAACACTAAAATTGTTAATCACATTtggataaaacacaaaaaaatgaagtAAATGCTTTTTCCAGAGAAGGGTTGTGTTTGAGGGTTATTTGTATAGCAATTTGTGATGATCATATGATTAATCCGTGTATTGCTGTAAAGTGGTTTGTCAGTGGAGTATTCGTGTTTTCTGATTATAGCTAATGCCGGGCCGATGTTTTTGGATAAAGATCCCTCGATCATCTTTAGTATTTTTTTCCTCTAGCTCCTCTTTTTAAAGGGAATGAAGACCCTGCTTTAGTCTTGATTATTGTTTTGATACTGACATTTTTTATGAGGTTTTCCAGTCTAAATATGATCGATTTACACTGTCTCTGAGGCTGGTTTGTACGATAATCCTCTGTAATGGTATACTCCAATATCTTCTCTCTAAATATGAGCTCTTACACAGGGCAGTCTAGTCTCATTGCTTTTAACACTGGAATCACAATATGCAAATGAAAGGCAGATGAAGCTAGTAGAATCAGATTTTGGTAATATTGTGTAAAGCAGATTAAATAAGCCTTAAACATGCCGTGAAACCGATTGTCATACATGTGGTAGTTGCAAGAAGGCAGCACAGTGGATGTTTTAATGATTATAACGGAATAAAGGATGCATGGAAGTGTC

Function

symbol description
abhd17c Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and regulation of postsynapse organization. Predicted to be located in dendritic spine; postsynaptic density membrane; and recycling endosome membrane. Predicted to be active in endosome membrane and plasma membrane. Orthologous to human ABHD17C (abhydrolase domain containing 17C, depalmitoylase).

NR:

description
PREDICTED: protein ABHD17C

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01076 ABHD17; abhydrolase domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795212.1 True 4921 mRNA 0.44 3 9056333 9091510

Neighbor

gene id symbol gene type direction distance location
mesd mesdc2 coding upstream 305453 8745162 ~ 8750880 (+)
stard5 stard5 coding upstream 434621 8604276 ~ 8621712 (+)
LOC120556467 tmc3 coding upstream 454655 8545261 ~ 8601678 (+)
mex3b mex3b coding upstream 909406 8140884 ~ 8146927 (+)
efl1 efl1 coding upstream 986666 7939212 ~ 8069667 (+)
LOC120556464 NA coding downstream 169701 9261211 ~ 9296717 (+)
lins1 NA coding downstream 540497 9632007 ~ 9642958 (+)
lrrk1 lrrk1 coding downstream 769642 9861152 ~ 10096639 (+)
LOC120555943 LOC103372586 coding downstream 1333653 10425163 ~ 10465554 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding downstream 1392953 10484463 ~ 10485311 (+)
G26218 NA non-coding upstream 235349 8820753 ~ 8820984 (+)
G26217 NA non-coding upstream 239717 8816407 ~ 8816616 (+)
G26216 NA non-coding upstream 243301 8812828 ~ 8813032 (+)
G26211 cemip,LOC103130034 non-coding upstream 280671 8775447 ~ 8775662 (+)
G26210 cemip non-coding upstream 283008 8773080 ~ 8773325 (+)
G26273 NA non-coding downstream 144842 9236352 ~ 9238565 (+)
G26276 NA non-coding downstream 149155 9240665 ~ 9244453 (+)
G26297 NA non-coding downstream 207978 9299488 ~ 9300207 (+)
G26335 NA non-coding downstream 369407 9460917 ~ 9473100 (+)
G26347 NA non-coding downstream 515233 9606743 ~ 9608997 (+)
G26205 NA other upstream 296032 8753701 ~ 8760301 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other upstream 2050655 6993956 ~ 7005678 (+)
rwdd3 rwdd3 other upstream 2660627 6382570 ~ 6395706 (+)
LOC120555541 NA other upstream 2766557 6262410 ~ 6289776 (+)
G25743 NA other upstream 2768256 6287048 ~ 6288077 (+)
cers3a cers3,LOC102798777 other downstream 241719 9333229 ~ 9378611 (+)
adamts17 adamts17 other downstream 299598 9391108 ~ 9604462 (+)
asb7 asb7,LOC102792420 other downstream 562068 9653578 ~ 9677027 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other downstream 723187 9814697 ~ 9860000 (+)
lto1 oraov1 other downstream 2811762 11903272 ~ 11912722 (+)

Expression


Co-expression Network