snrpa1 (snrpa1)


Basic Information

Item Value
gene id snrpa1
gene name snrpa1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10259231 ~ 10292924 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795220.1
GGAAGCTTTTGTTCCGGTCGGACAGCAGCGTGTTTTGTTTGCAGCATTCCACGCACATCCGTGATTGCACGCCTCAGAACATTTAGTTGCAAAAATAATTTTCGCTAACCTCTGTTCTTTACCTCAACATGGTGAAACTATCTGCGGAGCTAATTGAGCAAGCTGCTCAATATACCAACcctgtgagagacagagagctggATTTACGAGGTTATAAAATCCCAGTGCTTGAAAATCTCGGAGCTACTCTGGACCAGTTTGACACTATTGACTTCTCTGATAATGAAGTCAGAAAACTGGACGGCTTTCCTCTGCTCAAAAGACTGAAAACATTGCTAATGAACAACAACAGGATTTGTCGCATAGGTGAGAACCTGGAGCAATCTCTGCAGAGTCTGACAGAACTGGTTCTCACAAGCAACAACATTCAGGAGCTGGGTGACTTGGACCCACTGGCCTCAGTGAAGACATTGACTCTTCTCAGCTTGTTAAGGAATCCAGTGACAAACAAGAAGCATTACAGGCTCTATGTCATCAACAAAATCCCACAGATCCGTGTGCTTGACTTCCAGAAGGTAAAGCTCAAGGAACGCCAGGAAGCAGAGAAAATGTTCAAGGGCAAACGAGGTGCTCAGCTTGCAAAGGATATTGCCAGGCGAACAAAAACATTCACTCCTGGAGTGGCAGCACAGCTTGAGAAAAAGAGGACAGGGCCATCTCAAGCAGACGTGGAAGCCATCAAGAATGCTATCGCTAATGCTTCATCGTTGGCAGAGGTGGAGAGGTTGAAAGGGATGCTGCAGGCTGGTCAGATCCCAGGACGAGATCTGAGACAAGGTCCAGCTGATATggtagaggaggaagaagaagaggacgaCACTGCACAGATGGAGTCACATATGGGTGGAGGTCCTGGAGAAGAGATGAATGAGGGTGAccaggaggaggatgaagaagacATGGATGAAGAGCCACAAGTTAATGGCTCCTGAGTTCCTGGAaataagttgttgtttttttgtattttctgtgtagATTTCTTGTGTTGGACATACATCTTACCAgggctgttttattttgtataacgACATACATTAAACTGATTTCTTATA

Function

symbol description
snrpa1 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP. Is expressed in female organism. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA1 (small nuclear ribonucleoprotein polypeptide A').

NR:

description
PREDICTED: U2 small nuclear ribonucleoprotein A'

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0008430 selenium binding molecular_function

KEGG:

id description
K11092 SNRPA1; U2 small nuclear ribonucleoprotein A'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795220.1 True 1112 mRNA 0.45 9 10259231 10292924

Neighbor

gene id symbol gene type direction distance location
zgc:113274 NA coding downstream 13845 10244124 ~ 10245386 (-)
selenos NA coding downstream 18004 10233464 ~ 10241227 (-)
chsy1 chsy1 coding downstream 27509 10127978 ~ 10231722 (-)
fah fah coding downstream 933943 9308597 ~ 9325288 (-)
arnt2 arnt2 coding downstream 1029654 9153242 ~ 9229577 (-)
ano9b ano9,LOC103369658,LOC100691858,LOC102197938 coding upstream 348014 10640938 ~ 10731901 (-)
LOC120555515 NA coding upstream 452937 10745861 ~ 10750166 (-)
tssc4 NA coding upstream 473249 10766173 ~ 10789770 (-)
LOC120555500 LOC107373152,LOC106943100,LOC106904307 coding upstream 914616 11207540 ~ 11220942 (-)
LOC120556010 tollip coding upstream 952828 11245752 ~ 11291530 (-)
G26467 NA non-coding downstream 132041 10126830 ~ 10127190 (-)
G26461 NA non-coding downstream 136622 10122398 ~ 10122609 (-)
G26455 NA non-coding downstream 156066 10102920 ~ 10103165 (-)
G26454 NA non-coding downstream 157664 10100237 ~ 10101567 (-)
G26390 NA non-coding downstream 480509 9778274 ~ 9778722 (-)
G26506 NA non-coding upstream 22644 10315568 ~ 10316079 (-)
G26507 NA non-coding upstream 23824 10316748 ~ 10317126 (-)
G26510 NA non-coding upstream 71896 10364820 ~ 10365176 (-)
G26515 NA non-coding upstream 94004 10386928 ~ 10387201 (-)
LOC120556222 NA non-coding upstream 98052 10390976 ~ 10402234 (-)
G26298 NA other downstream 962485 9295068 ~ 9296746 (-)
LOC120555589 cemip other downstream 1280087 8759601 ~ 8979144 (-)
tlnrd1 mesdc1 other downstream 1500423 8733419 ~ 8758808 (-)
il16 LOC102796330 other downstream 1561609 8630608 ~ 8697622 (-)
LOC120555934 NA other downstream 1762596 8494353 ~ 8496635 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other upstream 1183582 11476506 ~ 11510300 (-)
LOC120555651 NA other upstream 1350307 11643231 ~ 11669269 (-)
G26891 NA other upstream 1667777 11960701 ~ 11961772 (-)
G26924 LOC108281047 other upstream 2011615 12304539 ~ 12304824 (-)
G27075 LOC104939823,LOC100707594 other upstream 2777072 13069996 ~ 13095766 (-)

Expression


Co-expression Network