LOC120555985


Basic Information

Item Value
gene id LOC120555985
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18958969 ~ 18969478 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795225.1
ATCGGTTGCAATTTACAAGTCGCTCTAGGGTTTCGGTGGAAACACGCACCAGGCGGCTGGTTCCCTGTTTCATTTGAAAGAAAACTCAGACACAAAAGAATCAGTGAGTTAGTTTAAGGAAATAAAAGTGTTGACCATGGAGAGGAGGATTGCTACCTTGACTCTGCTGTCTCTGGTGCTGTCAGGTGTTGGTGCCATCCTTGTGACCATCCCGCAGGTGTTATATGAGGTTGCCAGGGGTAAGAATGTCACACTGCCCTGCAGCATTAAATTCCAAGGTACTGGTACCCCCAAACAAGTCATCGTCACATGGTCTGCTGTGGCTGACACACCAGGCACTCAAGAGGATGCTGTCCTCACTTATTATTCTACTGAACAAATTACTGACATCGGTACGCTGTATGAAGGCCGGGTGTCCCTGGATGTAGATGCTGCCACGGCAAATGCCAACCTGAAACTGTCCTCAACCACACTAAATGACAACAGGGTGTTTAAGTGCCATGCCCTGATTCCAAGTGACGTTAAGGGCACGCCGACCGCCACTACACGTCTGGTGGTTCTAGTGGCTCCAACTACGCCCATCTGTACGATCCAGGGAAAGGCAGAGTACGGCCAGAACATCAACCTGACCTGTTTGTCAGCGGAAGGCTCCCCGCCACCCACTTATACGTGGCAAAGTCTAGATGCCATGAACAAACCTCGTGATCTACCCCCCAGAGCCACCGCCCAGGGAGGCATCCTGTCTCTATACAATATCTCCAAAGATACATCAGGATTCTTCATCTGCACCTCAAAAAACAAGATCGGCTCTGCTTCCTACAACCTCACCCTCGCAGTAATGCCGCCTTCCATGAACATTGCCTCCACTGCAGGAATCATTGGTGGAGTAATCGCTGCGTTGATCGTGCTCATCATCGTCATCTactgctgctgttgtcggaagaagaaaaaggacgAAGAATACGCCATGGGAGTtcgtgaggaggaagaggaggaggagagggaaacttTCAAAGAGCCGGTTAGAAACGGTGTGAGTCCCCGTGCCGATGGGCAGGAGGACGCCCGGGGCTCTGACTCCAGTGTGAGGAACCCTGTTGAACTAAGTGAACGCGACTACAAGAACCGCAAGGATCTTGGCAGCGACTACGACGACCGCCGCAGCGACTACGACGACCGCCGCAGCGACTACAACGACCGCCGCAGCGATTACGACGACCGCCGCAGCGACTATGATGACCGCCGTGAAAGGTACAGTGACCGCAATGAGCGCTACGATGACGATCGCCGCTACGATGACCGCAGAGACCGTCGTATTAATGATGACGACCGCTATGATGATCGCAATCGTGACAGACCAGCTGTGCCAGCCAATAAGCCACCGAGGAGGAACTACGACGACTAAAGCCTCCAACCTGTATCGGCCATCTTCTGTCTTCTCCATCGACTTTACTCCAATGGCAGCCAGATAAATCTCACTCAAGGTGTGGCCTGGTTGGCTCAAACAACATTTTTCCCTCCATGGCTCTTGTTTTGAAATAATTGGCTCAAACGCCACAAATATACTAGAATTAAGAGGAAGCATAGTCTGTCCGAGAGGTTGAACAGTTTTGAGGAAAGATTAGTTTGTTTTAGAGAGCTGTGTGATACAGAAGTTAGGTGGTATTTTAGCTTTAAACTCACATTGTTGGCATTGTTACATAAGAATGCAAGGCCTTGTCGTCTGTCTTGATTTGAGATGTATTCTGCTGTTGGGTGTAACTAGTGGTAGTTGGGTTTTTTAGGATGCTACCTCCACACTAAAAAGGgctttaattttttgtttttttttttacgcttactaggattatttctgtttatttgacTAATGTCTAATGTCTCTTTTTATAGAAACATATTTAACCAGTTTTAATGTCCTCTATttggtgcattttttttttcttcctctgatTGTTGGGATTATTAATTTCACCACAGAtctatttttaaatgaataaataaatgtctaaattTGGAATGTAAATAATCTGTTTTATCTTGAATTATTTTGTAAAGAGATGTATGTTGAAATGCAATGAAATTAgacaatttacattacaaatGGTATTATTTTTATCTCAGCAATGGTAATGTTACCAGTTTTACATTTGGATTTGTGTTGTGAAACATTGTGTGTACTCTCAATCAtgaaatatactgtaaaaataaagctgaaataaaattaacaaaaca

Function

GO: NA

KEGG:

id description
K06790 GPA33; cell surface A33 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795225.1 True 2232 mRNA 0.45 8 18958969 18969478

Neighbor

gene id symbol gene type direction distance location
vegfd vegfd coding upstream 25145 18926038 ~ 18933824 (+)
pir pir coding upstream 33341 18910086 ~ 18925628 (+)
zgc:113276 LOC104963547,LOC103365175 coding upstream 49692 18899447 ~ 18909277 (+)
ace2 ace2 coding upstream 69467 18875952 ~ 18889502 (+)
scml2 scml2 coding upstream 161186 18770382 ~ 18797783 (+)
LOC120555986 LOC103365180,LOC104967792 coding downstream 1108 18970586 ~ 18995278 (+)
LOC120556409 LOC104967794 coding downstream 30050 18999528 ~ 19008386 (+)
tmem39a tmem39a coding downstream 40999 19010477 ~ 19023972 (+)
LOC120555696 NA coding downstream 134788 19104266 ~ 19109063 (+)
LOC120555834 NA coding downstream 144488 19113966 ~ 19123540 (+)
LOC120556026 NA non-coding upstream 111563 18846269 ~ 18847406 (+)
G28195 homer2 non-coding upstream 343160 18607305 ~ 18615809 (+)
G28163 usp8,LOC102785891 non-coding upstream 513673 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 777768 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 1039773 17918900 ~ 17919196 (+)
G28393 NA non-coding downstream 84646 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 88068 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 102342 19071820 ~ 19072036 (+)
LOC120555698 NA non-coding downstream 117717 19087195 ~ 19091823 (+)
G28398 NA non-coding downstream 125207 19094685 ~ 19094900 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 383027 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1215521 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3472518 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3512477 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3905347 15047877 ~ 15053622 (+)
LOC120555697 NA other downstream 104830 19074308 ~ 19087064 (+)
G28581 NA other downstream 517768 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 542878 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 802641 19772119 ~ 19993954 (+)
G28770 NA other downstream 1741626 20711104 ~ 20761147 (+)

Expression


Co-expression Network