LOC120555990


Basic Information

Item Value
gene id LOC120555990
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 38610832 ~ 38613388 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795249.1
TCCCAATACCCGCACTACGCCCTAAGGTCTTCCTCGAAGTGGACACTTGTTGAAAGTGCACTTAGGGGAGTAAGTGCACAAGGGCTCGAAGCTGTGAAGAGCAGAATTGGGACAGTTTTGCACACGTCACTATATACGTCACCTCTACATCACTTCTGTTTACAGGAGAGCAAACATGGCGCTGGTCGCAGTTGCGGTATTCGCAGTACTCCTGCTAAAATTGATTAGAACTCACCACCAGTTTATTACAAGAAGAATTAGGATCCGCAGGAGAAGAAGGCTCCTACACCGGATCCAAACATGTATGCTGATGCCCGACCAACAGttTGGCAGACTGATCAGGTATGCCAGGCTGAATCATACCATGCCTGTCCTTCTGGTGTATTTTGATGTTGAGAGAGACCTTCGACCCGACTACCGCCTTTCAAGAAAATCAATGGATGGCTTGATGGATGTTCTGCACAGGCACCAGGACCATGGCTGGGGATCTTATTTGGAAGTCCTAATATTTGTGTATTGGCTTGCACATGGACTGTCTTACAGAGTCACTGCCCGGGCGTTCTCTGTGCCAAAATCCACTGTATGCCGTGTGGTGCACAGAATTGCTCACAAAATTATGGACATTGCAGGTAAAGTGATTTGCTATCCACATCATGATGAACTTGAAGAAGTCGGCCTGCGATTTGGACGCCTTGCTCGGCATACAGCATTTGACAAGGCTGTAGGGGCAATAGATGGATGCCATATTCGTATTAAGCCTCCAAATCATAACAAACAGGACTATTTTAATTACAAACAATTCTATTCTATCCAAATGCAAGCCATCTGTGACTCTCAGGGACGTTTCATCAACATCTTTGTTGGTTTTCCTGGCTCTGTACATGATACACGTGTTCTAAAAAACAGCCCACTTTATGTCAATTCTGAGTACCCCCCACCTGGCTTTTTTCTTCTTGGTGATGGAGGATATCCCTGCATACAGTCCCCCATAACCATCATCACACCCTACAAACTGCCACTTCAAGGAAGGGTCGAGGAACGCTTCAATCAAAGCCATGCACGTGCACGTTCAATTATCGAACGAGCCTTTGGTATGATGAAGGCACGCTGGAGGGCAACACTCTTCAAAGCCTTAGAAGTAAAGGTTGGCTTCTGCACAGAGGTGGTAACTGCCTGTGCCTTCTTACACAATGTCTGCCTTACCCATGGTGATGTCCTGGAACCAGAGCCAGCTTATGATGCCTTACCACAACCACCAATACCAGATTCTGGACAGGAGACAAGTGGCAACCAGCTCCGGGCGAGACTCGCGGCACATGTATCTGCACCCCTTAATGTTCAAGGGCACCTTTTGGAACATGACTACACAATTTAATTAAAAGTACCTCATactccaacacacacatttttgtcaGGAGTGTAGAACGTTAACAACTTAATTATTCCATTGCTCTGACATTGCACATCAACGTGTACCTACCTATTTTGCTTGAAATTGTTTACTTACAGTtctgtgtatatattttgtaaaatgaaaaatgttgtcAATTACCTAGCATCTGTAAATATCAAATGTATCTGTCCTGAATATGTTAATACATCTATGGTTATAAGCCTACACTTGTACCTGGCGGTATTGTTCTGCATTGTCAgctcatttattttgttataaacTTGTCTTCAAGTACTTTGTTtcagtaaaaaaagtcatttttctaAA

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795249.1 True 1720 mRNA 0.44 2 38610832 38613388

Neighbor

gene id symbol gene type direction distance location
LOC120556549 LOC101080058,LOC102311314,LOC102789927,LOC100707142,LOC101467933 coding downstream 341289 38261950 ~ 38269543 (-)
fam219b fam219b,LOC100706880,LOC107382042,LOC101467417 coding downstream 349852 38251110 ~ 38260980 (-)
LOC120555797 arid3b,LOC103462611 coding downstream 360713 38187575 ~ 38250119 (-)
LOC120556472 LOC103354314 coding downstream 466915 38131136 ~ 38143917 (-)
LOC120556171 LOC100695086,LOC102308943,LOC101465403 coding downstream 517225 38056451 ~ 38093607 (-)
LOC120555936 nell1 coding upstream 142537 38755925 ~ 39085464 (-)
LOC120555939 NA coding upstream 319557 38932945 ~ 38934607 (-)
prmt3 prmt3,LOC102792178,LOC102297811 coding upstream 629287 39242675 ~ 39305929 (-)
htatip2 htatip2,LOC102791710 coding upstream 694654 39308042 ~ 39315790 (-)
nav2a nav2,LOC102790384 coding upstream 749034 39362422 ~ 39480462 (-)
G32684 NA non-coding downstream 239760 38369083 ~ 38371072 (-)
G32568 NA non-coding downstream 622644 37987103 ~ 37988188 (-)
G32556 NA non-coding downstream 625058 37985368 ~ 37985774 (-)
G32539 NA non-coding downstream 767275 37842235 ~ 37843557 (-)
G32484 NA non-coding downstream 868064 37741614 ~ 37742768 (-)
G32742 NA non-coding upstream 514520 39127908 ~ 39128107 (-)
G32749 NA non-coding upstream 624419 39237807 ~ 39238018 (-)
G32751 NA non-coding upstream 628501 39241889 ~ 39242103 (-)
G32828 NA non-coding upstream 929783 39543171 ~ 39607321 (-)
LOC120556195 NA non-coding upstream 1034559 39647947 ~ 39653298 (-)
LOC120556344 lrrc49,LOC102795887 other downstream 783561 37788725 ~ 37827271 (-)
ss18l2 ss18l2 other downstream 1357406 37231141 ~ 37253426 (-)
nod2 nod2 other downstream 1719528 36883651 ~ 36891304 (-)
cylda cyld other downstream 1728037 36859547 ~ 36882795 (-)
G31955 NA other downstream 4011291 34490660 ~ 34599541 (-)
slc6a5 slc6a5 other upstream 591887 39205275 ~ 39235746 (-)
LOC120556511 LOC102208128,LOC101468289 other upstream 1436236 40049624 ~ 40142048 (-)
LOC120556146 NA other upstream 1950853 40564241 ~ 40589664 (-)
G33122 NA other upstream 2035288 40648676 ~ 40662621 (-)
LOC120556513 NA other upstream 2047976 40661364 ~ 40663657 (-)

Expression


Co-expression Network