foxf1 (foxf1)


Basic Information

Item Value
gene id foxf1
gene name foxf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28093058 ~ 28097147 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795268.1
ATGCGCTGATGGCAACAGATAAGTAAAAAGTGAGCTCCTCGGACGCAAGACAACACACCAACTGAAGTGGAAAGCGGCTCCTGTTCTGCTCCTTATCCCATTTCGGACGCAGCGTACAACGCGGTACGGCTTCAGACTGCTGCAGGActgaatcaaaaggaagaagtCAGAGTTAAGAAGACAGTCTCGCCTTTGCCTCGTGCGTTAAGTTTGCCTACACGGTTacttttttttgctctttatgTCAGCGAATTAGAATTCAACTTTGTAGTGTTTATAGCTGGAAAGGTGGAAAGCAACCTATTTCGTTTGCCATCTCGAAGACTAAATTTAACTAATGACGGCAGAGGTCCAGCAGCCCCCAGCGCAGACTCCTGCCCAGAGCAGCCCGATGTCTGCCCCGGAGAAGCCGCACGGACAGACCGCCGTGATGGAAACCGCCTCCTCCACTACGAAAACCAAAAAGACAAACGCAGGGATCCGAAGACCAGAGAAGCCCCCCTATTCATACATTGCTTTAATAGTCATGGCTATCCAGAGCTCTCCAACCAAGCGCCTGACGCTCAGTGAAATATACCAATTCCTGCAGAGCCGCTTCCCGTTTTTCAGGGGCTCATACCAGGGATGGAAGAACTCCGTGCGTCACAACTTGTCTCTGAACGAGTGCTTCATTAAGCTGCCCAAGGGCCTCGGCCGGCCAGGGAAGGGCCACTACTGGACTATCGACCCGGCTAGTGAGTTTATGTTTGAGGAAGGCTCCTTTAGAAGGAGACCCAGGGGTTTTAGGCGCAAGTGCCAGGCGCTGAAGCCCATGTACAGCATGATGAACGGCCTGGGATTCAACCATATCCCCGAGTCCTACAACTTCCAGGGGAGCGGCGGGGGCCTATCCTGTCCGCCCAACAGCTTGTCTCTGGACAGTGGGATTGGGATGATGAATGGACACTTGTCAGGTAACATGGAAGGGATGGGTCTGTCCGGGCACACCATGTCACACTTGTCGACCAACGGTGGACATTCCTACATGGGAAGTTGTACAGGATCCACTGGCAGTGATTACCCCCACCACGACAATTCCGCCTCCCCTCTGCTCACCAGCGGAGGAGTCATGGAGCCTCACCCCGTCTACTCGAGCTCAGCCTCGGCGTGGGCTCCGGCCCCCTCGGCGTCGCTGAATAACGGGGCATCCTACATAAAGCAGCAGCCTCTGTCTCCTTGTAATCCAGGGGCAAACTCGCTGCAGCCAAGCTTGCCCACACATTCACTAGACCAGTCTTACTTGCACCAGAACGGGCACAGTACTACAGATTTACAAGGTATTCCTCGGTACCATTCCCAGTCTCCAAGCATGTGTGACCGGAAGGAGTTCGTCTTCTCGTTCAACGCCATGACGTCCTCAGCGATGCACTCACCGAGCAGCAGCTCGTACTACCACCACCAACAGGTCTCCTACCAGGACATCAAGCCCTGCGTTATGTGATGCCCCCCACGGACAACCTGCAGACCAGAGGACGGTGTCACGGACTTGAGCCATGCAGCAGGGTGAACTGAAATGAGAACAAACGAGTAAATAACCACTGAGAGACATAAAGGCATGCCATGGAGAGCGCTCACTGCTTCAAGTAGACCGGACTACTTTTCTGTACGGTTTCACACTGCGACAAAGACAGGCCAATCACAAAGcaacaacataataataataataaaacaaactttttcatgCCATCAACATCGACCAGCGGGGTAAAGACTGGGTATATGAAACCCTGCTGCTGTCTGGTACTTAGTCCTGCAGAGCGGATGACTACCACTTCACACTTTAATGTTTATTCGTCTTGTTTAAGTAGGCCAATGTAAAAATGCACACGTCCATTTTCCCCGTCTGAAGTTTATACATACTTTTATTTCCTCTGACAAATTAGACTGAggctcctttttcttttttggactTTAATACCAGCGTTgaatttttaaatgaacaaTTATGGACATCACATAAACATGTCCATATATATGTAAAAACGATGAAGGCACTTTTTGAATAGCCTAGcgcatctttttatttattctgtaggcctacatattttaatttcagGCGAATTGGCCAAGGAGGTATATTCTGTATTGGCAATATTTGTCAGAACGCttgttgttttaaaatgaaattgaGGATATATTGTAAGCACTGTTATGTCGTCTGTGTTAGATATATGTAGACCATTACTTTCAGCACTGTATACTTATATGTTAGGAAAATTAGCAAGGTTCCATCAATGAGGGCTAATTTTTAGGTTTTATTACAACAAATCATttgtaagaaataaaatatatctGTTGGGCTGTTTAAGCCtaaatccacaaaaaaaaaaatcgatttcaTCACCCACCCATAATTCATGCCAATTTTTGGGGGACACTACAAATATCCCACCAAAACTGTAAATCTCATGTTGGTGATCACTATTACACAATCAACCCAAAATGTGTAGTATTTAAAGAATAGGTTTCTAACACATGGTTTGCAATTAATAATTCAAACTAAAAAGGTGGGTAAACTGAGTTCACATGGCTTTAATCTACTAAATATTTGGGgataatgaagaaaaaaaaaattaaaagcatAATATGCATATAAAAAGGTCCATACTAGTACTATAGTACTGCAACAGAAAAATGTTCCAGGAATATCACAGTGGTGTCTTGAATGCAGTTCATGATTGAGGCCAAAGTCGAACAGTTTAACTAACAGTCTGTTTTCATCTGGCAGGAGCAGGTCATGCCTGTTATTGTAAGATGACATTAAATGAACAAATCTGATTTTCCACAAAacaatgattaattgattatagattttaaataaatggttttaaagaa

Function

symbol description
foxf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in nucleus. Is expressed in gut; head; swim bladder; and swim bladder bud. Human ortholog(s) of this gene implicated in persistent fetal circulation syndrome. Orthologous to human FOXF1 (forkhead box F1).

NR:

description
PREDICTED: forkhead box protein F1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795268.1 True 2874 mRNA 0.45 2 28093058 28097147

Neighbor

gene id symbol gene type direction distance location
trnal-uaa_2 NA coding downstream 212845 27880131 ~ 27880213 (-)
LOC120556190 LOC104927843,LOC104965371,LOC100704236 coding downstream 221801 27863663 ~ 27871257 (-)
kif7 kif7 coding downstream 237471 27841587 ~ 27855587 (-)
si:ch211-122f10.4 LOC104945215,LOC102776050,LOC102212265,LOC101480742 coding downstream 438650 27649504 ~ 27654408 (-)
gfod2 gfod2,LOC102778057 coding downstream 546254 27541636 ~ 27546804 (-)
irf8 irf8 coding upstream 101963 28199110 ~ 28203878 (-)
dusp22a LOC104927513,LOC103374648 coding upstream 108579 28205726 ~ 28224206 (-)
LOC120555377 LOC101062555,LOC102216107,LOC102302772,LOC101473643 coding upstream 128477 28225624 ~ 28227538 (-)
gse1 gse1 coding upstream 142383 28239530 ~ 28420256 (-)
atmin atmin,LOC102791907 coding upstream 360253 28457400 ~ 28464778 (-)
G30586 NA non-coding downstream 54851 28037134 ~ 28038207 (-)
G30579 NA non-coding downstream 73983 28011000 ~ 28019075 (-)
G30576 mc1r non-coding downstream 91630 28001197 ~ 28001428 (-)
G30551 LOC102797876,LOC102077336,LOC101469017,LOC102307906,LOC103372225 non-coding downstream 135434 27956247 ~ 27957624 (-)
G30519 NA non-coding downstream 194673 27897943 ~ 27898385 (-)
G30634 NA non-coding upstream 127946 28225093 ~ 28225447 (-)
G30644 NA non-coding upstream 245553 28342700 ~ 28392518 (-)
G30691 NA non-coding upstream 571451 28668598 ~ 28668964 (-)
G30759 NA non-coding upstream 1043207 29140354 ~ 29140638 (-)
G30852 pax6 non-coding upstream 1289610 29386757 ~ 29396683 (-)
dbndd1 dbndd1,LOC103136566 other downstream 19579 28046759 ~ 28073479 (-)
G30577 mc1r other downstream 90588 28001640 ~ 28002470 (-)
G30465 furin,LOC102777676 other downstream 321248 27766831 ~ 27771810 (-)
G30422 got2 other downstream 459436 27626893 ~ 27633622 (-)
G30319 NA other downstream 776900 27310171 ~ 27316158 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other upstream 350809 28447956 ~ 28550000 (-)
G30693 NA other upstream 572044 28669191 ~ 28669868 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other upstream 672854 28770001 ~ 28846965 (-)
LOC120555471 hipk3 other upstream 1120706 29217853 ~ 29269183 (-)
prrg4 NA other upstream 1213403 29310550 ~ 29314709 (-)

Expression


Co-expression Network