cdhr5a (LOC104966020,LOC102208740,LOC102306030,LOC102082062,LOC107382057,LOC103155221)


Basic Information

Item Value
gene id cdhr5a
gene name LOC104966020,LOC102208740,LOC102306030,LOC102082062,LOC107382057,LOC103155221
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 41680273 ~ 41701675 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795317.1
GACGGGGCATTATGTGGACGAGTACCAGCTGGTACCACGggctcctcatcctcctctggGACTTCATTTGTTTAGTGCGTCTCAAATCAGGACATGGAACTGAAATCGAAGAGCAAACCTGCGAACGTTCTCCTCGGATGCGTCGCCGTCGTCGTCGTCTGCTTTTGTACAGTTTGTCCGGCTGAAAGACTCTGCACGGTTCCTCCGGGCCCCGTGGCGGTCCCAGAAAACAACACGGCCGACATCCAGGTGGTAAAAATCCTCTCCGGTAGTGATGTGATGCTGACGGTCACCGTGAACCCTGAAGACCTGTTCTACCTGAAAGGGAACGCCCTGATGGTAAAGAAAGGACTCGACTATGAGtCGTTCCACAGTGCAGCTCTGGTGGTGTGGGTGCAGTGCAGCAGAGATGGCTCCAAATCTGTGAGCGAGTCTGTTGAAGTTCTGGTTGAAAACGTGAACGATAACCCTCCAAATTTTGCACAAAGCCACTACGTACTGGAAGTGAATGAGCTCCTTCCTGTCAACTCCAGCGTGGGACTGATAGAAGCATCGGATATTGATTCAGAGCCGCTGTATTATCGCTTAGAGCCTGCAACAGACAAATATTTCCGCCTAGAAAACATCAACACTCCAAAGATAATTGTAAAAAGCATCCTGGACTACGATGTTGTTCAGAAGATCTCTCTGGTTCTCCACGTGCAGGACACGCTGGAGGGTTCGGCCTCCGACGAGCCCTTCTTCACATCCGTGGCCACCATCACGGTGCACGTCAAGGACGTTGACAACCGGCCTCCGTGGTTTCAGCCTTGTTTGAGGACCAACTTGGGAATCGCCAAACTGTGTGTGAGCACCGGCTACAGAGGCAAAGTCAACCTCACCGAGAAGGAGGACGGGCCGTTGGTGCTGGAGCCCGGTCCAGTGTTCGCCAAGGACGGAGACAAGAACCGGAGCGAGCAGATCAGCTACAGAATCCTCAGAGGGAATGAGGGAAATATTTTCCAGATTGatgaggaaacaggaaacatctcCATGGCTAAGGCTGCTGATATTGTCGGCCCAATAACTCTCACTGTTCTGGCGTCACAGGTGACCAACAGGGATCAGTTTGCGGTGACGCAGGTGACCATCAACGTGATGAAGAAGAGCAGGAACCCTCCTCGCTTTGAGAGGGAGCGATACGAAGGATTTATCTACAGCAACTCGATCCCTGAGAGCATGATCCTCCGAGACCGAAGCACCAACCGGCCCTTCAGGGTCCGAGCTCAGGACGAGGACTTCGCCGCTggtGCGAATCCAGATGTGAAGTATGAGGTCCAGTACAGCAGCTACGTCAACGTCACCTCGGACGGTTTTGTGATCCTGAAGAGAGTCGTTAAGACGGAGTCCTTCGCGCTTCAGCTCAGAGCCGTGGACACGACAACGGGGGAGTTTGGAACAGCTGCCCTCTCTGTTCAGGTCATACCAGCCGTGGCCACCCCGTCCCCCTCAAACGTCGGCTACCGTCCGGGCGACATGGCGCTTCTGGGTCTGGTCATGGCGGCCCTGCTGGTCCTCTGCCTCATTGTGATTGGCTTCTTGATTTCCCGCTTGTGGAAGGGAAATGCCAGCGTGGACAAAATATGTGAGTGCCTGGGCCCCTGCCTGAAGTCGGACCAGCCGCGGCCCGGCCACAGGGACTCCCTGCAGTATACCAACGACGGCTTCCAGAACGAGGGCGACCCGAGCCGCGGGGGTGGCAGACGCTGGACCAACGTTCTCCCCAGACGGAGCACCTTCCCCCAGGCACGAGGCCGGGTCATCCCCATGGAGAGACGGAGCCGCCACTGCTCCTCCTGCGGCGTCTACACCAACCACGTCCCCAAGGGGAGCCCCTCGGTGAGGCCGTCCCGCAGGGGGAGAGGCGACGGGGACGAGTACAGCCGGAGGTCCATCCTGGCCAagcagaggaggaaagagggccAGAAGACGGTGTGGTTCAAGGAGATCGAGGACTCGTCTGACATCGAGGTGGAGATTATCCCGGACACTGTAGGCCGGGTGGAGGAGGAGACGGAGGAGGAGCTGGATATGGAGGGGGTTGTCAGAGACCCGGCGGCCCCGCTGAGAGAGCCCGACGGCGGGCAGGAGAGCCAGAGCGCGGAGCCTAGTGAGGAGCGGGACCGTGGGAATACCAGCTCAGAAAAAGAGAAGGGAGGCCAGGAGCAGGAGGGCTGACAGCAGGGGGGGTCACAGGGGAAACTCCGGTCGGAGAATGAAACTGAGCTTTGTtttcttgtcactttttttggagACGCCAGCCTTCAGCAGGGAGGTCCCAGCAGACCAGGATGACTGGCTAACTGCCCAAACCTCAAGAATACATTCAAGGATCCAAAACGTATTTACTTTCTACTGTGAGTATCTTCAGAAGACTAGTGTCCAAGGTAATAACTTCATACAATATTTCAAAACATAAACCTgtccaacgcattctcatgaacgggtttgtatATCGCACAAAcacttatgcacaacaattcgtataatatcctacgaaattagggtAAAGGCCGGTCACATGACCACCTGTTAAGTTTAGTggtctttacagttacattCAGCTGAGAAAAGGTGACTATCATGCAGCGACGAGAGTTGACTTTGAGTTGAGACACCAAAACggctagttaagattagaaaaaaaagattgtagTTTGGATTAAAATGCCAGCccccttaaagggatacgccagcgtttgttgaaatagggcttatttttatttattttttaaatagggcttatcacggtc

Function

NR:

description
cadherin-related family member 5-like isoform X1

GO: NA

KEGG:

id description
K16505 CDHR5, MUCDHL; cadherin-related family member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795317.1 True 2792 mRNA 0.54 14 41680273 41701675

Neighbor

gene id symbol gene type direction distance location
ppip5k1a ppip5k1 coding downstream 179866 41453032 ~ 41500407 (-)
tp53bp1 tp53bp1,LOC104941490 coding downstream 287458 41361515 ~ 41392815 (-)
LOC120555591 cdkn2aip,LOC102799175,LOC108249214 coding downstream 335078 41342668 ~ 41345195 (-)
iqgap1 iqgap1 coding downstream 406914 41199741 ~ 41273359 (-)
crtc3 LOC103367860 coding downstream 488576 41146518 ~ 41191697 (-)
LOC120555595 kiaa0895l,LOC105940675,LOC102205198 coding upstream 144584 41846259 ~ 41865163 (-)
LOC120556217 NA coding upstream 203094 41904769 ~ 41910826 (-)
LOC120556548 LOC104961102,LOC105919414,LOC102215897 coding upstream 298554 42000229 ~ 42017731 (-)
pole3 pole3 coding upstream 341514 42043189 ~ 42050360 (-)
herc1 herc1 coding upstream 563818 42265493 ~ 42341342 (-)
G33383 LOC103462981,LOC106924557,LOC102221671,LOC103155220 non-coding downstream 7411 41670400 ~ 41672862 (-)
G33371 znf408,LOC104941494 non-coding downstream 109037 41571002 ~ 41571236 (-)
G33369 NA non-coding downstream 113853 41566215 ~ 41566420 (-)
G33368 NA non-coding downstream 114798 41560832 ~ 41565475 (-)
G33347 NA non-coding downstream 234531 41445529 ~ 41445742 (-)
G33431 NA non-coding upstream 56770 41758445 ~ 41810063 (-)
G33432 NA non-coding upstream 65491 41767166 ~ 41791971 (-)
G33454 NA non-coding upstream 138648 41840323 ~ 41848807 (-)
G33455 NA non-coding upstream 142407 41844082 ~ 41863265 (-)
G33457 NA non-coding upstream 146393 41848068 ~ 41848640 (-)
LOC120556513 NA other downstream 1016616 40661364 ~ 40663657 (-)
G33122 NA other downstream 1017652 40648676 ~ 40662621 (-)
LOC120556146 NA other downstream 1090609 40564241 ~ 40589664 (-)
LOC120556511 LOC102208128,LOC101468289 other downstream 1538225 40049624 ~ 40142048 (-)
slc6a5 slc6a5 other downstream 2444527 39205275 ~ 39235746 (-)
sirt3 sirt3 other upstream 55952 41757627 ~ 41764896 (-)
G33711 NA other upstream 697616 42399291 ~ 42402136 (-)
G33796 NA other upstream 1283548 42985223 ~ 42990770 (-)
G33847 NA other upstream 1512959 43214634 ~ 43214987 (-)
G33914 NA other upstream 1751037 43452712 ~ 43456847 (-)

Expression


Co-expression Network