rhpn2 (rhpn2)


Basic Information

Item Value
gene id rhpn2
gene name rhpn2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1744192 ~ 1774421 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795405.1
ATGACGGACACTCTTTTACCAAACGGCATCAAAGACAGCGGAGGAGACAGCAGTTATTTCAAAAAAGGTTGTAACCCGTTTGCCCAGACTGGACGAAGCAAACTTCAGAATAAACGAGCCAATGTGAACCAGCAGATCATCAAACAGATGAGGATGAGGGCTGGAGCTGAGAACCTGCTGAAGGCTACATCTAACAACAAGGTTAAAGAGATGGTTCTGTTGGAGTTGAGCTATGTTAACTCCAACCTACAGCTACTGATGGGACAGCTTGAAGGACTCAACAGCTCAGTAGAGGTCTACCAGAACACCCAGGAAACAGCCAACATCCCCCTCATTGCTCTGGGTCTAAAGGAGACAAAAGACATTGACTTCTCCACTCTATTCAAGGACTTTATCTTGGAGCACTACAGTGAAGACGGGAACAGTTTTGAAGATGAGATTGCTGACCTGATGGACCTGCGACAGGCTTGCAGAACGCCAAGTCGAGATGAGGCTGGGGTGGAACTGCTGGCCAAATACTTCAGTCATCTTCCTCTGATGGAGAGCCGGTTCTTCTCCCCATCCCGCCAGACTGGCATCTTCTTCACCTGGTACGACTCTTTTACAGGAGTGCCGCTATGCCAACAGAACCTCTCACTGGAGAAAGCCAGTGTCCTCTTCAACATGGCCGCCCTCTACTCTCAAATCGGCACCCGTAGTGACCGACAGACAATAGCCGGCCTGGAGGAGGCCATCTCTTCCTTCCAGAAAAGTTCAGGTATCCTGAACCAcctgaaagagacacacacccacactcccAGCTACGACATGAGCCCAGCCATGCTCAGTATGTTGATTCGGATGATGCTTGCTCAGGCTCAGGAGTGCCTGTTTGAGAAGACTGCACTGCCTGGGATCCGAAACCAGTTCTATTCCCTGATGAAAATGGCCCAGGAGGCTGCAAAGGTCTCAGAAATCTATGACCAACTCCATCAGTCCATGATCCAGACGCCAATCAAAGACAATGTCCCGTTCTTCTGGTCCACCATGTCGCAAGTCAAAACCAACCACTACCGCTCCATGGCACACTATTTTGCAGCCTCAGCGCTCCTGGACCACCAGTTGAGTCTCCGTGATGATGAGGACCAGCAGGAGAAGACCTTGTCACAGGTCTATGATCGCCTTCCTGAAGGACGCTCTCCTCTTGACATCCTGAAAAGGAAAGATGAACGTGAACGCATTGGTAAAGCACACATTCGTCGGGCCATACTGGGTCATGAGGAGGCTCTAAGGATCTTTGGTTTGTGCCACCACTTAAACAAGCTGGAGGCCCTGCAGGAGATTTTAAAAGCCAGTCACCAGCGCTCGCTCAACAAGTGCAGTGAAAATGAAGATGAGGAAGAGTTCACAGACTACACGGAGGCCCCAGACATCATCTCTAAAACAGAGCACAAAGCAGAGATGGAGGTTCCCGCAACTACAAAGGTGAAAGTCACAGACTTCTTCCAGAGGCTGGGCCCTCTGTCAGTCTTCTCAGCCAAGCAGCGGTGGACAGCCCCACGGACATTACATCTTTGCCCAGAAGACAGAGACCTGGGCTTTACCCTGAAAGGGGAAACACCAGTCCAGGTGGTTTCGTTGGACCCCCTCTGCCGAGCTGCTGCTGACGGTCTGAAGGAGGGTGACTACATTGTTGCCGTGGGCAACACAGATTGCAAATGGATGGGCGTGAGCGATGTGATGCGGCTGCTGAAGGATGTGGATGAGAAGGGGATTGACATCCAGGTGATCAGCATTATGGACAGCAACCCACCAATGCCTACCAAGAGTGCCACCTTCTGTGGAAACCTGCCTAAAACCTACTCCATGATTTGTCTGGcctatgatgatgatgacaagaACCCCAAGTCCCGCAAAGTAACCAAGAAGTCGTCCTTCCTCAGCTGGGGTCTGAAGAACAGGCTGAAGAGCGCCAGCACCCTCAGCCTTCCCACTGCTGACCACTCCGGGGGCCTTCCTTGGAATAAACCCTGTCCCACGTTCCCCAGCTCCAGCACCTACAACAACGACAGTGCCCTCTACTGAGCCAGCTGCAGACTTCTTACTGTCTGCAAGCATCGTTTAGTATGCATATTAGGCCTAGTATGGCTGTATACAGTACTGTCTtgtagaggtcgaccgatatggGTTATTCTCTGGCAGATGCCGATCTTTAGAAATCAGGGTTAGCCGACGTCCGATAAATGCTGCCAATTTATTTTGGCCAATATGTGCTTGTTTTTAAACCTCcatttgaaagataaaatgtaacactaataattacttaagatacacaaaatttctcaacaaaacacttcaccaatctgcacttgtatacttaaattaaa
>XM_039795406.1
TGTCCTGGGTGACTTGAGTGAgagcagacagaaagacagacgtCGTTGGAAGAGAGAGGATACACACCTGTTGAACAGCAGCGCTCTGGTtttatttcacttgtttttccTCACAGTTTCAGAGTCTGAGCCTTTAAGATGACGGACACTCTTTTACCAAACGGCATCAAAGACAGCGGAGGAGACAGCAGTTATTTCAAAAAAGGTTGTAACCCGTTTGCCCAGACTGGACGAAGCAAACTTCAGAATAAACGAGCCAATGTGAACCAGCAGATCATCAAACAGATGAGGATGAGGGCTGGAGCTGAGAACCTGCTGAAGGCTACATCTAACAACAAGGTTAAAGAGATGGTTCTGTTGGAGTTGAGCTATGTTAACTCCAACCTACAGCTACTGATGGGACAGCTTGAAGGACTCAACAGCTCAGTAGAGGTCTACCAGAACACCCAGGAAACAGCCAACATCCCCCTCATTGCTCTGGGTCTAAAGGAGACAAAAGACATTGACTTCTCCACTCTATTCAAGGACTTTATCTTGGAGCACTACAGTGAAGACGGGAACAGTTTTGAAGATGAGATTGCTGACCTGATGGACCTGCGACAGGCTTGCAGAACGCCAAGTCGAGATGAGGCTGGGGTGGAACTGCTGGCCAAATACTTCAGTCATCTTCCTCTGATGGAGAGCCGGTTCTTCTCCCCATCCCGCCAGACTGGCATCTTCTTCACCTGGTACGACTCTTTTACAGGAGTGCCGCTATGCCAACAGAACCTCTCACTGGAGAAAGCCAGTGTCCTCTTCAACATGGCCGCCCTCTACTCTCAAATCGGCACCCGTAGTGACCGACAGACAATAGCCGGCCTGGAGGAGGCCATCTCTTCCTTCCAGAAAAGTTCAGGTATCCTGAACCAcctgaaagagacacacacccacactcccAGCTACGACATGAGCCCAGCCATGCTCAGTATGTTGATTCGGATGATGCTTGCTCAGGCTCAGGAGTGCCTGTTTGAGAAGACTGCACTGCCTGGGATCCGAAACCAGTTCTATTCCCTGATGAAAATGGCCCAGGAGGCTGCAAAGGTCTCAGAAATCTATGACCAACTCCATCAGTCCATGATCCAGACGCCAATCAAAGACAATGTCCCGTTCTTCTGGTCCACCATGTCGCAAGTCAAAACCAACCACTACCGCTCCATGGCACACTATTTTGCAGCCTCAGCGCTCCTGGACCACCAGTTGAGTCTCCGTGATGATGAGGACCAGCAGGAGAAGACCTTGTCACAGGTCTATGATCGCCTTCCTGAAGGACGCTCTCCTCTTGACATCCTGAAAAGGAAAGATGAACGTGAACGCATTGGTAAAGCACACATTCGTCGGGCCATACTGGGTCATGAGGAGGCTCTAAGGATCTTTGGTTTGTGCCACCACTTAAACAAGCTGGAGGCCCTGCAGGAGATTTTAAAAGCCAGTCACCAGCGCTCGCTCAACAAGTGCAGTGAAAATGAAGATGAGGAAGAGTTCACAGACTACACGGAGGCCCCAGACATCATCTCTAAAACAGAGCACAAAGCAGAGATGGAGGTTCCCGCAACTACAAAGGGCCCTCTGTCAGTCTTCTCAGCCAAGCAGCGGTGGACAGCCCCACGGACATTACATCTTTGCCCAGAAGACAGAGACCTGGGCTTTACCCTGAAAGGGGAAACACCAGTCCAGGTGGTTTCGTTGGACCCCCTCTGCCGAGCTGCTGCTGACGGTCTGAAGGAGGGTGACTACATTGTTGCCGTGGGCAACACAGATTGCAAATGGATGGGCGTGAGCGATGTGATGCGGCTGCTGAAGGATGTGGATGAGAAGGGGATTGACATCCAGGTGATCAGCATTATGGACAGCAACCCACCAATGCCTACCAAGAGTGCCACCTTCTGTGGAAACCTGCCTAAAACCTACTCCATGATTTGTCTGGcctatgatgatgatgacaagaACCCCAAGTCCCGCAAAGTAACCAAGAAGTCGTCCTTCCTCAGCTGGGGTCTGAAGAACAGGCTGAAGAGCGCCAGCACCCTCAGCCTTCCCACTGCTGACCACTCCGGGGGCCTTCCTTGGAATAAACCCTGTCCCACGTTCCCCAGCTCCAGCACCTACAACAACGACAGTGCCCTCTACTGAGCCAGCTGCAGACTTCTTACTGTCTGCAAGCATCGTTTAGTATGCATATTAGGCCTAGTATGGCTGTATACAGTACTGTCTtgtagaggtcgaccgatatggGTTATTCTCTGGCAGATGCCGATCTTTAGAAATCAGGGTTAGCCGACGTCCGATAAATGCTGCCAATTTATTTTGGCCAATATGTGCTTGTTTTTAAACCTCcatttgaaagataaaatgtaacactaataattacttaagatacacaaaatttctcaacaaaacacttcaccaatctgcacttgtatacttaaattaa

Function

symbol description
rhpn2 Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Is expressed in several structures, including EVL; axis; nervous system; periderm; and pronephric duct. Orthologous to several human genes including RHPN2 (rhophilin Rho GTPase binding protein 2).

NR:

description
rhophilin-2-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795405.1 False 2366 mRNA 0.50 15 1744192 1774283
XM_039795406.1 True 2473 mRNA 0.50 15 1744193 1774421

Neighbor

gene id symbol gene type direction distance location
LOC120555617 NA coding downstream 236284 1459164 ~ 1507908 (-)
tdp1 tdp1 coding downstream 541110 1193040 ~ 1203082 (-)
LOC120556384 LOC104919714 coding downstream 553306 1176462 ~ 1190886 (-)
pdpr pdpr coding downstream 687898 1037755 ~ 1056294 (-)
mrpl46 mrpl46 coding downstream 714137 1021963 ~ 1030055 (-)
lrp3 lrp3 coding upstream 44010 1818431 ~ 1831946 (-)
trnat-agu_3 NA coding upstream 58900 1833321 ~ 1833394 (-)
dnaja2a dnaja2 coding upstream 60667 1835088 ~ 1846922 (-)
LOC120556324 neto2 coding upstream 74433 1848854 ~ 1871276 (-)
itfg1 itfg1 coding upstream 98410 1872831 ~ 2039002 (-)
G25113 NA non-coding downstream 81706 1661728 ~ 1662486 (-)
G25112 NA non-coding downstream 82495 1661359 ~ 1661697 (-)
G25111 NA non-coding downstream 82839 1660832 ~ 1661353 (-)
G25110 NA non-coding downstream 83457 1660494 ~ 1660735 (-)
G25039 NA non-coding downstream 285650 1458037 ~ 1458542 (-)
G25246 NA non-coding upstream 674006 2448427 ~ 2449619 (-)
G25256 NA non-coding upstream 874807 2649228 ~ 2649449 (-)
G25275 NA non-coding upstream 1055116 2829537 ~ 2829747 (-)
G25276 NA non-coding upstream 1120294 2894715 ~ 2895109 (-)
G25277 NA non-coding upstream 1142491 2916912 ~ 2917542 (-)
cep89 NA other downstream 3353 1664770 ~ 1740839 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other downstream 101844 1587544 ~ 1642348 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other downstream 188546 1510165 ~ 1555646 (-)
LOC120555898 mctp2 other downstream 287084 1410674 ~ 1457108 (-)
pnoca NA other downstream 639025 1061104 ~ 1105167 (-)
G25228 NA other upstream 501054 2275475 ~ 2277091 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other upstream 3905621 5680042 ~ 5717433 (-)
LOC120555534 LOC103369663 other upstream 4381801 6156222 ~ 6167529 (-)
ankdd1a ankdd1a other upstream 4548856 6323277 ~ 6346561 (-)
pop4 pop4,LOC105418436,LOC104960843 other upstream 4734838 6509259 ~ 6524355 (-)

Expression


Co-expression Network