LOC120556051


Basic Information

Item Value
gene id LOC120556051
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15374188 ~ 15392333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795407.1
GTAAACTGGTGTTATTCTTATCAGTTTCACTATGCCCTCCTCTTGAGGCGCAACTTTTTTACGTCTGGTCTAGCCAGTTAAACTCCATTCTGCCTAAATTCGGCTGAGCTCCACCTTCATCAGTCTTTCAGTCTTGTACGAGAACACATTTACTGAAGGCTCCATACAAAACCTGTCTATTAGGTGGGACTTTAAAGCTTTGGAAAGGAAGTGTGGCTTAAGGGTGGCTCACGTACATGCAGTGCAACTCCATACTCCTTCTCCAACATTGGTTTAGACTTCCTGTCTGACTGAGGAGGTGAGATGCTAGACACATTCAAACTGGGCATCCTGTTGCTGAGCCTGACTCTGGTCCTGTTAGGCCCAGCCTGCCAAGCCTCTTCTCTGGGACTGACGGTCAACGTTGTGCCCCTGGACATCGATGGAGGGAATACGGTGCGGGCTTATTTCAGTGCCATCGCTCCCATTCCTTGTCCAACTCTGTCTGGACTGTGTGCTGAGGGGGAGGACTGTCAGGTCTACACTACCTCATCACCTTTCACCGGCACTAAACCCAACCCTGGCTGGTGTGTCCGCCAGTGGCAGAAAACTGTCCCCAGCAATTACAACGCCACCATAACTTTAGGGTCCAACACAGAATTTTATGTGTCAATGAAAGCAGGACCACATCTCCGGGCAAACAGTGGGAGACTCAACCGACCTGCTTTTGTCGGTCTCCCTCCTCCACTTAGGGCCCGTGTGAACTGCCCTCACGATTTCCATTTGTCGGTCAAAGACCTGGATGGTGACAGGGTAAGATGTCGCTTTGCCCAGCCCGATCAGGGAGAGTGTCTCAACTGCACTCAGCACTCTTTCATAGAGCTGGACGAGGAGAAATGCATGTTGACATTCACTGGAAAAGCACCGGCAGGACAGTATTTCCTCTACCTGATGGCGGAGGACCGGATTCCTGTGCCCAAAAAAAGCCACATCACAGACAACAAACCCCTCAGCTCTGTCCCTgtgcagctctctctcactgTGGAGGAGTCGACTTCCAGCTGCAGTGATGAACCGGTGGCAACAGGTGCGACCCCCAAAGAGGACTCCATGCTGTTTGTCCTGCCGTACCAAGAGGTGCAATTCACCACCGACTTTATGTCACAGCTGGAGAGTGTTTTAGAGGTAGCAGTGGTTGGTCCCCCTGAACTCTTCAGGGTTGGTTTTAAATCAATTGGACCCCTGGCAACCATGACCATGGCCTGGGTCCGCTCTGAAAACAACCTGGCCCGCCTTTTGCCCATCTGCTTTGCTGTGAATACCATGAGTCTGCAGTCAGAGCCCAGATGCGTGTGGCTGTACCAAAGGGAGATGAGGAAACTACCTGCTGGAACAGAGCTGACGTGTGAGAAGACAGAAATGACCCTGGTGCTCCCTGTCACCTCCCTGAGTAACATCAACCTGGCCGAACTGCAGCTCAACAGCCCCACCTGTCCCGTCAcctacaacaacacacacctgACTGCACATATCTCCTTGACTGGCTGCGGCACCAAGACTGTGAGCTCTGGTTCAGAGCTGGTTTACACCAACACCTTGCAAAGTGTACGTCCCTACACTATGGTCAGCCGCCAGCCCTCCCTAGTCCTCCCTCTGGCCTGCCGGATCCCTGGAGCCCAGGTCAAGGGCCTGCAGTACAACGTCAGCATGCCCACAGAGAAGGAGACCTTCGGTGAGTTCAGCATTTGGATAGAATTTGACTTACCAGGAGAGGGGCCCCTGAGAGAATACACGGGCATACCCACACTTCGCTCCATCCAGATGCCGCCAGGACGACTGCGTCGAGAAGCGGAATCACCATCAGACAACTCGAAGAGCATCTCCACTAATACCAGCACTTCTACGGGAGGACCGAGGATCGGGTCCAGGATCGAGACACTGGACCTCCTGGTGTTGTCAAACTGCAGCATTGCTCAAGCAGAGATGGTAGTGAGCAGTTGTATTGAGTCTGAGACGGCAGACTTTGCAAAATCCTACCCCCTTCTGGAGCAAGGgTGTGCAACTTCCAACAGCACATTAGAGATTGTTACAAGACAAAGCAATTCCAAGGTTTACCGCCTTGATTTGAGCTCCATGAAGGCCGAAGGATCTACGATGTATGTCCAGTGCACAGTCAATCTGTGCATCGCCACCGGGCCCTCTCAGACGTGCCCTGATCTGTGTACCCGCTCCATCAATCCAAGCTCATTATTGGTTGGCAGTGTGTTTACCACCGCCTACACCGTTCGCTCAGGACCCGTTAGACTCGTGGTCACCCCAACCACACCAGCCACAGCAACCTTCACGACTACTACTACAACCACTACTGCACCAACTacaacaactaaaactactacTGTTACTGTTCCAAATACCACAGCGGCCCACAGCACCACCACATCACATTCTCTAGAACAGGCCTCAGCCATGGCAGCAGGAGTGATTTTGACTATCAGCATATTTCTTCAAAACATCGTCCTTTACTGAACATACTGCTGGATGATGATCTGTCAGGATATGAAGCACTACATTTGCCTGTTTTGGACATTTGAAGTTTTAATCCACACATGATTACACCGTACATATTAAGCTTTTCCAGAGAAGCGAATACAAGCGAGAGCACCTTACATTACtgtcaaaaaactaaaatatattgCTGAACTGCTCACATTGACTAATCATTATTACTGTATCTCAAATCACAAGTAGTTATAGGATGCTAAAGGATGTGACATAGACAAGGGGTCACACAATAAAATATTCTCCCTAACATGGggctttattttaaatttgctTATATGGGGAGCCCTCGAGTCGGTGGACTTTGTTGCATGTtattcttcctctctttcccctcACTTCctgtcaaaaaagaaaaatatatttttctataaTAAATTGTTTGTATAACATGAA
>XM_039795408.1
GTAAACTGGTGTTATTCTTATCAGTTTCACTATGCCCTCCTCTTGAGGCGCAACTTTTTTACGTCTGGTCTAGCCAGTTAAACTCCATTCTGCCTAAATTCGGCTGAGCTCCACCTTCATCAGTCTTTCAGTCTTGTACGAGAACACATTTACTGAAGGCTCCATACAAAACCTGTCTATTAGGTGGGACTTTAAAGCTTTGGAAAGGAAGTGTGGCTTAAGGGTGGCTCACGTACATGCAGTGCAACTCCATACTCCTTCTCCAACATTGACTTCCTGTCTGACTGAGGAGGTGAGATGCTAGACACATTCAAACTGGGCATCCTGTTGCTGAGCCTGACTCTGGTCCTGTTAGGCCCAGCCTGCCAAGCCTCTTCTCTGGGACTGACGGTCAACGTTGTGCCCCTGGACATCGATGGAGGGAATACGGTGCGGGCTTATTTCAGTGCCATCGCTCCCATTCCTTGTCCAACTCTGTCTGGACTGTGTGCTGAGGGGGAGGACTGTCAGGTCTACACTACCTCATCACCTTTCACCGGCACTAAACCCAACCCTGGCTGGTGTGTCCGCCAGTGGCAGAAAACTGTCCCCAGCAATTACAACGCCACCATAACTTTAGGGTCCAACACAGAATTTTATGTGTCAATGAAAGCAGGACCACATCTCCGGGCAAACAGTGGGAGACTCAACCGACCTGCTTTTGTCGGTCTCCCTCCTCCACTTAGGGCCCGTGTGAACTGCCCTCACGATTTCCATTTGTCGGTCAAAGACCTGGATGGTGACAGGGTAAGATGTCGCTTTGCCCAGCCCGATCAGGGAGAGTGTCTCAACTGCACTCAGCACTCTTTCATAGAGCTGGACGAGGAGAAATGCATGTTGACATTCACTGGAAAAGCACCGGCAGGACAGTATTTCCTCTACCTGATGGCGGAGGACCGGATTCCTGTGCCCAAAAAAAGCCACATCACAGACAACAAACCCCTCAGCTCTGTCCCTgtgcagctctctctcactgTGGAGGAGTCGACTTCCAGCTGCAGTGATGAACCGGTGGCAACAGGTGCGACCCCCAAAGAGGACTCCATGCTGTTTGTCCTGCCGTACCAAGAGGTGCAATTCACCACCGACTTTATGTCACAGCTGGAGAGTGTTTTAGAGGTAGCAGTGGTTGGTCCCCCTGAACTCTTCAGGGTTGGTTTTAAATCAATTGGACCCCTGGCAACCATGACCATGGCCTGGGTCCGCTCTGAAAACAACCTGGCCCGCCTTTTGCCCATCTGCTTTGCTGTGAATACCATGAGTCTGCAGTCAGAGCCCAGATGCGTGTGGCTGTACCAAAGGGAGATGAGGAAACTACCTGCTGGAACAGAGCTGACGTGTGAGAAGACAGAAATGACCCTGGTGCTCCCTGTCACCTCCCTGAGTAACATCAACCTGGCCGAACTGCAGCTCAACAGCCCCACCTGTCCCGTCAcctacaacaacacacacctgACTGCACATATCTCCTTGACTGGCTGCGGCACCAAGACTGTGAGCTCTGGTTCAGAGCTGGTTTACACCAACACCTTGCAAAGTGTACGTCCCTACACTATGGTCAGCCGCCAGCCCTCCCTAGTCCTCCCTCTGGCCTGCCGGATCCCTGGAGCCCAGGTCAAGGGCCTGCAGTACAACGTCAGCATGCCCACAGAGAAGGAGACCTTCGGTGAGTTCAGCATTTGGATAGAATTTGACTTACCAGGAGAGGGGCCCCTGAGAGAATACACGGGCATACCCACACTTCGCTCCATCCAGATGCCGCCAGGACGACTGCGTCGAGAAGCGGAATCACCATCAGACAACTCGAAGAGCATCTCCACTAATACCAGCACTTCTACGGGAGGACCGAGGATCGGGTCCAGGATCGAGACACTGGACCTCCTGGTGTTGTCAAACTGCAGCATTGCTCAAGCAGAGATGGTAGTGAGCAGTTGTATTGAGTCTGAGACGGCAGACTTTGCAAAATCCTACCCCCTTCTGGAGCAAGGgTGTGCAACTTCCAACAGCACATTAGAGATTGTTACAAGACAAAGCAATTCCAAGGTTTACCGCCTTGATTTGAGCTCCATGAAGGCCGAAGGATCTACGATGTATGTCCAGTGCACAGTCAATCTGTGCATCGCCACCGGGCCCTCTCAGACGTGCCCTGATCTGTGTACCCGCTCCATCAATCCAAGCTCATTATTGGTTGGCAGTGTGTTTACCACCGCCTACACCGTTCGCTCAGGACCCGTTAGACTCGTGGTCACCCCAACCACACCAGCCACAGCAACCTTCACGACTACTACTACAACCACTACTGCACCAACTacaacaactaaaactactacTGTTACTGTTCCAAATACCACAGCGGCCCACAGCACCACCACATCACATTCTCTAGAACAGGCCTCAGCCATGGCAGCAGGAGTGATTTTGACTATCAGCATATTTCTTCAAAACATCGTCCTTTACTGAACATACTGCTGGATGATGATCTGTCAGGATATGAAGCACTACATTTGCCTGTTTTGGACATTTGAAGTTTTAATCCACACATGATTACACCGTACATATTAAGCTTTTCCAGAGAAGCGAATACAAGCGAGAGCACCTTACATTACtgtcaaaaaactaaaatatattgCTGAACTGCTCACATTGACTAATCATTATTACTGTATCTCAAATCACAAGTAGTTATAGGATGCTAAAGGATGTGACATAGACAAGGGGTCACACAATAAAATATTCTCCCTAACATGGggctttattttaaatttgctTATATGGGGAGCCCTCGAGTCGGTGGACTTTGTTGCATGTtattcttcctctctttcccctcACTTCctgtcaaaaaagaaaaatatatttttctataaTAAATTGTTTGTATAACATGAA
>XM_039795409.1
GTAAACTGGTGTTATTCTTATCAGTTTCACTATGCCCTCCTCTTGAGGCGCAACTTTTTTACGTCTGGTCTAGCCAGTTAAACTCCATTCTGCCTAAATTCGGCTGAGCTCCACCTTCATCAGTCTTTCAGTCTTGTACGAGAACACATTTACTGAAGGCTCCATACAAAACCTGTCTATTAGGTGGGACTTTAAAGCTTTGGAAAGGAAGTGTGGCTTAAGGGTGGCTCACGTACATGCAGTGCAACTCCATACTCCTTCTCCAACATTGGCATGTTTAGACTTCCTGTCTGACTGAGGAGGTGAGATGCTAGACACATTCAAACTGGGCATCCTGTTGCTGAGCCTGACTCTGGTCCTGTTAGGCCCAGCCTGCCAAGCCTCTTCTCTGGGACTGACGGTCAACGTTGTGCCCCTGGACATCGATGGAGGGAATACGGTGCGGGCTTATTTCAGTGCCATCGCTCCCATTCCTTGTCCAACTCTGTCTGGACTGTGTGCTGAGGGGGAGGACTGTCAGGTCTACACTACCTCATCACCTTTCACCGGCACTAAACCCAACCCTGGCTGGTGTGTCCGCCAGTGGCAGAAAACTGTCCCCAGCAATTACAACGCCACCATAACTTTAGGGTCCAACACAGAATTTTATGTGTCAATGAAAGCAGGACCACATCTCCGGGCAAACAGTGGGAGACTCAACCGACCTGCTTTTGTCGGTCTCCCTCCTCCACTTAGGGCCCGTGTGAACTGCCCTCACGATTTCCATTTGTCGGTCAAAGACCTGGATGGTGACAGGGTAAGATGTCGCTTTGCCCAGCCCGATCAGGGAGAGTGTCTCAACTGCACTCAGCACTCTTTCATAGAGCTGGACGAGGAGAAATGCATGTTGACATTCACTGGAAAAGCACCGGCAGGACAGTATTTCCTCTACCTGATGGCGGAGGACCGGATTCCTGTGCCCAAAAAAAGCCACATCACAGACAACAAACCCCTCAGCTCTGTCCCTgtgcagctctctctcactgTGGAGGAGTCGACTTCCAGCTGCAGTGATGAACCGGTGGCAACAGGTGCGACCCCCAAAGAGGACTCCATGCTGTTTGTCCTGCCGTACCAAGAGGTGCAATTCACCACCGACTTTATGTCACAGCTGGAGAGTGTTTTAGAGGTAGCAGTGGTTGGTCCCCCTGAACTCTTCAGGGTTGGTTTTAAATCAATTGGACCCCTGGCAACCATGACCATGGCCTGGGTCCGCTCTGAAAACAACCTGGCCCGCCTTTTGCCCATCTGCTTTGCTGTGAATACCATGAGTCTGCAGTCAGAGCCCAGATGCGTGTGGCTGTACCAAAGGGAGATGAGGAAACTACCTGCTGGAACAGAGCTGACGTGTGAGAAGACAGAAATGACCCTGGTGCTCCCTGTCACCTCCCTGAGTAACATCAACCTGGCCGAACTGCAGCTCAACAGCCCCACCTGTCCCGTCAcctacaacaacacacacctgACTGCACATATCTCCTTGACTGGCTGCGGCACCAAGACTGTGAGCTCTGGTTCAGAGCTGGTTTACACCAACACCTTGCAAAGTGTACGTCCCTACACTATGGTCAGCCGCCAGCCCTCCCTAGTCCTCCCTCTGGCCTGCCGGATCCCTGGAGCCCAGGTCAAGGGCCTGCAGTACAACGTCAGCATGCCCACAGAGAAGGAGACCTTCGGTGAGTTCAGCATTTGGATAGAATTTGACTTACCAGGAGAGGGGCCCCTGAGAGAATACACGGGCATACCCACACTTCGCTCCATCCAGATGCCGCCAGGACGACTGCGTCGAGAAGCGGAATCACCATCAGACAACTCGAAGAGCATCTCCACTAATACCAGCACTTCTACGGGAGGACCGAGGATCGGGTCCAGGATCGAGACACTGGACCTCCTGGTGTTGTCAAACTGCAGCATTGCTCAAGCAGAGATGGTAGTGAGCAGTTGTATTGAGTCTGAGACGGCAGACTTTGCAAAATCCTACCCCCTTCTGGAGCAAGGgTGTGCAACTTCCAACAGCACATTAGAGATTGTTACAAGACAAAGCAATTCCAAGGTTTACCGCCTTGATTTGAGCTCCATGAAGGCCGAAGGATCTACGATGTATGTCCAGTGCACAGTCAATCTGTGCATCGCCACCGGGCCCTCTCAGACGTGCCCTGATCTGTGTACCCGCTCCATCAATCCAAGCTCATTATTGGTTGGCAGTGTGTTTACCACCGCCTACACCGTTCGCTCAGGACCCGTTAGACTCGTGGTCACCCCAACCACACCAGCCACAGCAACCTTCACGACTACTACTACAACCACTACTGCACCAACTacaacaactaaaactactacTGTTACTGTTCCAAATACCACAGCGGCCCACAGCACCACCACATCACATTCTCTAGAACAGGCCTCAGCCATGGCAGCAGGAGTGATTTTGACTATCAGCATATTTCTTCAAAACATCGTCCTTTACTGAACATACTGCTGGATGATGATCTGTCAGGATATGAAGCACTACATTTGCCTGTTTTGGACATTTGAAGTTTTAATCCACACATGATTACACCGTACATATTAAGCTTTTCCAGAGAAGCGAATACAAGCGAGAGCACCTTACATTACtgtcaaaaaactaaaatatattgCTGAACTGCTCACATTGACTAATCATTATTACTGTATCTCAAATCACAAGTAGTTATAGGATGCTAAAGGATGTGACATAGACAAGGGGTCACACAATAAAATATTCTCCCTAACATGGggctttattttaaatttgctTATATGGGGAGCCCTCGAGTCGGTGGACTTTGTTGCATGTtattcttcctctctttcccctcACTTCctgtcaaaaaagaaaaatatatttttctataaTAAATTGTTTGTATAACATGAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795407.1 False 2934 mRNA 0.50 16 15374188 15392333
XM_039795408.1 False 2928 mRNA 0.50 16 15374188 15392333
XM_039795409.1 True 2938 mRNA 0.50 16 15374188 15392333

Neighbor

gene id symbol gene type direction distance location
taldo1 taldo1,LOC102780893 coding upstream 116 15362199 ~ 15374072 (+)
ddb1 ddb1 coding upstream 220073 15079794 ~ 15154115 (+)
LOC120555721 arl14ep,LOC102778030,LOC103375558 coding upstream 509399 14852285 ~ 14864789 (+)
fibinb fibin,LOC103373419,LOC106523552 coding upstream 667954 14702979 ~ 14706234 (+)
luzp2 luzp2 coding upstream 910895 14283159 ~ 14463293 (+)
LOC120555952 LOC103368873 coding downstream 1451 15393784 ~ 15418775 (+)
cpeb1b cpeb1 coding downstream 98066 15490399 ~ 15504450 (+)
senp8 senp8,LOC103374590,LOC103374606 coding downstream 625935 16018268 ~ 16021643 (+)
cln6a cln6,LOC100690854 coding downstream 909448 16301781 ~ 16312679 (+)
calml4a calml4 coding downstream 920390 16312723 ~ 16320946 (+)
G27459 NA non-coding upstream 308679 15062219 ~ 15065509 (+)
G27449 NA non-coding upstream 356683 15016584 ~ 15017505 (+)
LOC120556117 NA non-coding upstream 373901 14999704 ~ 15000287 (+)
G27432 NA non-coding upstream 416321 14957500 ~ 14957867 (+)
G27358 NA non-coding upstream 642542 14730817 ~ 14731646 (+)
G27565 rps17,LOC101480409,LOC100699764,LOC107389132 non-coding downstream 131641 15523974 ~ 15531915 (+)
G27566 NA non-coding downstream 141670 15534003 ~ 15535415 (+)
G27567 NA non-coding downstream 153158 15545491 ~ 15545779 (+)
G27568 NA non-coding downstream 154111 15546444 ~ 15546655 (+)
G27613 NA non-coding downstream 426275 15818608 ~ 15819369 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 320566 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 409126 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 639012 14708562 ~ 14735176 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other upstream 1517765 13809935 ~ 13856423 (+)
slc35c1 slc35c1 other upstream 1697575 13671477 ~ 13676613 (+)
LOC120556433 psma4,psa4,LOC106562664 other downstream 49122 15441455 ~ 15446492 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other downstream 82814 15475147 ~ 15486451 (+)
LOC120555788 NA other downstream 2332212 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 3169540 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 3681975 19074308 ~ 19087064 (+)

Expression


Co-expression Network