XLOC_005076 (fam20a)


Basic Information

Item Value
gene id XLOC_005076
gene name fam20a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2906610 ~ 2940070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009874
GAGCCGCTGAAAGGAGCAACACATGTCTCCAATGAATGGATTATAACAACCGGAAACTGGACGTCGTTTACAGTCATTCAATCCTGAAGGGCCATGAGGAGGGACCGGCTGCTGGTGGCCGTCACTTTGGTCACTCTTCTAGCAGCTGATCTCCATTTCATCCTCCTCCCCAGACTCAAATCCTGGTATTTTCTGCCCAGAGAGAGCTGCTCCTGCGGGGACTCCAATGGGAGTGTGGATGCGATGTGGATGTGGAGTCAGAATTGGACAGCGGTTTCCATTGAGAAAGGCTCTAAGCTGGAGCGGCTCTTCAGGCATCCGCTTTACAACATCCGTCTGCCGGATCTGAGGGCCGATGAGCTCCTGCTGGAGCGCCAGGAGCTCATCAACTACTACCAGAGGAAAGTGAGCCGCTGGGAGAGGATGAAGAAGTTCTACATGGAGGCGGCCGCAGCTTCAAACATCTCCATCTCTGACCATCCGGTGAGTTTTAAACCGGACGCCAGCTGGCTTCAGTTCCACCTGGGGATCAACAGATACGCGCTGTATAACCGAGAGGACAGCAGCGTGGACACACTCCTGCAGGACATGCAGACGGACACTGTCATTAACGCAGATTTCACTCAGGATGAGAAAGCACTGAAGGGCGCATGCGACTGCTCACAAGTGGTCAAACCGAGCGGCCTTCACCTGAAATTGGCCCTGAAGCTCCAAGACTTTGGCAAAGCTATGTTTAAACCAATGAGACAGGAGCGGCACGAAGAGACACCAGAGAACTTCTTTTACTTTGTGGACTTTCAGAGACATAATGCCGAGATCGCAGCTTTCCATCTCGACAGagtgctGGATTTCCGGAGAGTTCCTCCAGTAGCAGGACGATTTGTCAACGTGACGAGTGAGATCTTGCACATCACCCACAATGAGGAGCTGCGCAGCGTTTTCTTCACCTCGCCAGCCAACAACACGTGTTTCTTTGCCAAGTGTTTGTACGTCTGTAAGTCGGAGTATGCGGTGTGTGGTCACCCTGACCTGCTGGAGGGCTCCATGTCTGCGTATTTGCCAGGTTTGAGCATCGCGCCCCGAATCTCCATCCCCAACCCTTGGATTCGTTCCTACAGCTTCACCGGGACAGAAGAGTGGGAGGTCAATCCTTCATACTGCGACACGGTCAGGAAGCATTATCCCTACAACTCTGGAAACAGACTGCTCAATATGATCGACATGGCAGTTTTTGACTTCCTCACAGGAAACATGGACAGACACCATTATGAAATTTTCACAAAGTTTGGAGATGAAGGTTTCCTGCTCCACTTAGACAACGCCAGAGGATTTGGACGCCATTCCCATGATGAGCTGTCCATTCTCGCACCGCTGACCCAATGCTGCATATCTGCAGATGGAGTAATAATGTGTTCGTCCAGGATCAAGCGCTCGACTCTGTTCCGACTGAAGCTGCTGTCGAGCTCTGAGTACCTGCTGAGTGACGTGATGAGGGAGTCTCTGTCCCGGGACGCTCTGAGTCCAGTGCTGACGGAGGAGCACCTGCAGGCCCTGGACCGTCGGCTCAAACACACACTCCTCGCCGTGGACACGTGTGTGGACAAACACGGAGAAGCTCAGGTGGTCTTTACTGACTTTGAGGAAGCAGACAGAGTTACTGCAGGACAGCAGAGGTGACAGCGGGAGCAGAGcggattacacacacacacacacacacacacacaaacacaaacacacaactgagGATATATGTGCACAATACCCCTGAACAAATCCATGGA

Function

symbol description
fam20a Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in enamel mineralization. Predicted to colocalize with Golgi apparatus. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1G. Orthologous to human FAM20A (FAM20A golgi associated secretory pathway pseudokinase).

GO:

id name namespace
GO:0070166 enamel mineralization biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-081022-117 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in enamel mineralization. Predicted to colocalize with Golgi apparatus. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1G. Orthologous to human FAM20A (FAM20A golgi associated secretory pathway pseudokinase).

Ensembl:

ensembl_id ENSDARG00000079486

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009874 True 1781 mRNA 0.52 11 2906610 2940070

Neighbor

gene id symbol gene type direction distance location
XLOC_005075 zdhhc16b coding downstream 37026 2849584 ~ 2869584 (-)
XLOC_005074 ubtd1b coding downstream 105751 2780190 ~ 2800859 (-)
XLOC_005073 NA coding downstream 161969 2703355 ~ 2744641 (-)
XLOC_005072 NA coding downstream 237110 2625669 ~ 2669500 (-)
XLOC_005071 CU929359.1 coding downstream 289100 2579237 ~ 2617510 (-)
XLOC_005077 si:dkey-202c14.3 coding upstream 11116 2951186 ~ 2993095 (-)
XLOC_005078 dcxr coding upstream 103238 3043308 ~ 3053882 (-)
XLOC_005079 rfng coding upstream 114372 3054442 ~ 3077395 (-)
XLOC_005080 col1a1b coding upstream 155629 3095699 ~ 3133483 (-)
XLOC_005081 si:ch1073-13h15.3 coding upstream 280215 3220285 ~ 3237561 (-)
XLOC_005069 NA non-coding downstream 426679 2067963 ~ 2479931 (-)
XLOC_005068 NA non-coding downstream 904786 2000636 ~ 2001824 (-)
XLOC_005083 NA non-coding upstream 341686 3281756 ~ 3284909 (-)
XLOC_005086 NA non-coding upstream 579098 3519168 ~ 3544016 (-)
XLOC_005087 NA non-coding upstream 629677 3569747 ~ 3570081 (-)
XLOC_005092 NA non-coding upstream 842551 3782621 ~ 3786382 (-)
XLOC_005094 NA non-coding upstream 920394 3860464 ~ 3865234 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_06216778_06234561 FAM20A coding CI01000047 null 6215626 ~ 6235272 (-)