rbms1a (LOC104918252,LOC103359468,LOC103143540)


Basic Information

Item Value
gene id rbms1a
gene name LOC104918252,LOC103359468,LOC103143540
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19237245 ~ 19256129 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795467.1
GACGTTCCAACGTGCCTTTATCACAGAAACATAAACCGCCGGTGCGAGTTTGTTTGAGGCGACCACGCAGTTTATTTGATGTCAAACACCCTGCAGAGGCGGAGATGGTTTGGTCTGTAGTAGGTGGGACTGCCGAGCGGTCTGCAGCAGGACGTCGTAGATCAATGAACCGGACCGAAGGGTTGGTCCATCGCCTGGTGTGCATCTGACTGTATGAGTCAGTATACGCTACATATGCAGGACCgaggctttttttttgtactgttaAACAACCCGTTCAGTATGTTTTAAACCGACTGGCTATTTCATAGGCCCCCTACACCGCTTGGATTCCGTCTCTAGTGGCTCCTCGTTGcgattttcatttttcttttttgggaaataaaataaatctccaGGATGATCTTCGCAAACACAGGCAACCCGCTGAAGACAGCCAATCGTAAACAGTCCTACCCCATGACTCCGTCcagtcccagcagcagcagcaacagcagcagcacaggccTGGAGCAGCTCAGCAAAACCAACCTGTACATCCGCGGCCTGCCTCCTGCCACTACAGACCTGGACCTGGTCAAACTCTGTCACCAGTATGGCAAAATTCAGTCAGCAAAAGCAATCCTGGACAAGACAACCAACAAATGTAAAGGTTACGGCTTTGTGGACTTTGACAGCCCTGCGGCTGCTCTAAAGGCAGTACATGCTTTGAAAACCAGCGGCATACAGGCCCAGATGGCCAAGCAACAGGAGCAGGACCCCACTAATCTGTACATTTCCAACTTGCCTCTTTCTGTGGATGAGAAAGAGTTGGAGAACAtgctgcagcccttcggccaGGTTGTCTCCACCCGGATCCTCCGAGACTACAGCGGTAACAGCCGAGGCGTGGGCTTCGCCAGGATGGACACGACAGAGCAGTGTAATGCAGTCATCTCCCACTTCAATGGGAAGTTTATCAAGATAGCTTCTGGAACTCTGGCTCCCTCTCAGCCCTTGCTGTGTAAGTTTGCAGACAGTCAAAGGAAGAAACATGCTCACAGCGGATTTGTTCCCAATGGACATACAGGGGATCTGAGACTAGGTGCAATGACTCTTACCTATGACCCCTCCTCAGCGGCTATACAGAATGGGTACTATCCTTCTCCGTATCCAATGAACAACAGGATAATGACGATGCAGCCTGCGATGTCTCCCTACATGTCTCCAGTCTCTGCTTACCAGGTACAGAGTCATTCTTGGGTGGCACATCAACCATATATCATGCAACACCCGGGTGCTGTGATGTCTCCCTCTGTGGATCCCTCCATGTCAATGCACCCTTCAGCCATGATTACTCAGCAGATGGGCCAGCTGTCACTGGGAAACAATGGAGCGTATATTTCAGCCAACCCTGGTGTCCAGGGAGCTTACATGCCTCAGTATCCTCCCATGCAGGCAGCAGCTGAAAACGGCACGCCGCAACAAGTGGATTCTTCCAACAACTCGTCTCCTTATAGTCAACTCAGCAAGTAATCACAGTTTTGGGCTTGATTCCCGCTCTGTGAGCCTGAGGGCAGGTGGGCAGGTTGCCAATGACATCCCAGGGGTAACAGTCACCGACTTCTCTGATTGGACCAGATACATGAACTTTTTTGCACAGCCCCGATGTTTGTGGTGGAAAATGAGGACAGTGTAAATGGACTCAAGCAGTTGGCTAAtcacaggagagaaaaaaaaaaaaaaaaaaagatttattttgaTAAGAAACAACATGctctttttccccctcttttttcAAGGATTCTCAAACAAATTCCAGAggacccccacccctcccccagtATGATGTGATATTAAAATGCATGAGATTGAggtagtccccccccccccacctccaaGATTTCTATGATTTTATAGTTCCTTTATTTGTGATATATGAAAGAAAAATTTGCAAAACCTTGTTTGCACTGAAGTTTAAAGTTTCAGAATATCCTCATTTTGCTTTTCAAAGTCGCcacaaaatagcttaaaaaaTCAAATCATGTTCAACTGCAATCGACAGCTGATACAGGTGGCCATTTCATTAGGTAATTAATGCATTTATTATTGGAAAAGGTGCCTTCCTTACGTCACATCAAACATTCTCCCACATTTCTTTCATCGAACTTGATCAGGTGTCATATTTCATATCTGATTAATCAAACGTGTGTGTGAAATCATAGAGATTTCCATTGAGTGTTTCGCTATCTAGTCTTCTGGTAGCAATAAAGACAATGAGAGTCCCACGGCAATACTGAGAAAAAAGGTGACAGACTCAGAGCAAGGTAATTCCTTATTTtccctctttccttttttaaaaaatcttcaagacgtgacatgaaaaaaaagagCCGTACTTTTATGAAATTACAAGTTTTACACCCAATGGACATCTTTTAGGAggtttttttgttcttcttgtGGTCAGTTTGACCAATGATCTACCTCATTAGTTCTGCTGGAGTCTGCTGGTGTTATGGGGTTTGCAGGTAAAGCCCCCTTGTTCACCAGAATGGACGAAGCAGAACAAAAGCCACGCTCAGGAGCTGGCTAAATAGGACTTCTGCCCGTCTGTCTCCCACATGCAGCGTTTCTCTTCCTGATCTGTAAAGAAACATTGTGCTTTACTTCGTCTTTATTTGTCATTGCTTCTGTTCTggtgtttctttttctcactaTGATGAGCTTTGTGTGGTTGTGAGGCTCCATTTTAGAGATTCAATGTAAGTCAACTACTAGCTACTCCTTGAAATAGTTGGTTTACAATGTGCTTGAAACAAATGAATGCAGGCtatgtgcatttattttgtacatTCTTCTGCCTTTGCCATTTTAGACAAATCTTAGATGACTCACCACTTCCCCTaaccttttctctttttcctttaaTCTTGGGTTACACTGCTCTCCAAAAATAACGCTAGGATTTGGCCAAATTGTGGTCATTTGGTTATACAGCAGCTTAATTGTGTACATGCCAAACAATTTGGATCTCAAATCTTGcctcatgcaaaaaaaaatttaaaaaaatgcaacaatcaTGTATGAAGTACTTTAAAAGCAGCAGTATTTTACAAGAATTTGATGGAAGTTGAGGTTGGCTTGTTCAGAATAAGATTTGTAAAAATATATGCGTTCAGGGCCAAAAGTGAAGAATAAGTGAGTTGTATtgtttgctttgctttttttttttcttcaaattgatTATTTCTGATGTAAGAACTCTACACTACTATGAGACAAGAAAAATGGTTGAAGCTGTATGGTCGCGGTGCTTTTCCTCGATCAATAATACTGTAGCAGTAAACGCTCACCTTTGGAAAATACAACCAGTAACCTGCTTTTACTGAGTGTGCTTTCCCATTCTGAACTTTTGTTGctgcaaaaaaatttaaaaatgaaaaaaaaaaatcgtgtACATGTTATCCTCATTGCTTCCCCTGTCGCCTTCAACTAATTCTCAAGCAATCTTCTCCTTGCTCTTTCCTTTGAAAACATTGGAATAAAAACCGTGCTGAATAAAAGGCTCTTCTCTTTCTCA
>XM_039795468.1
AACACCAGACGTTCCAACGTGCCTTTATCACAGAAACATAAACCGCCGGTGCGAGTTTGTTTGAGGCGACCACGCAGTTTATTTGATGTCAAACACCCTGCAGAGGCGGAGATGGTTTGGTCTGTAGTAGGTGGGACTGCCGAGCGGTCTGCAGCAGGACGTCGTAGATCAATGAACCGGACCGAAGGGTTGGTCCATCGCCTGGTGTGCATCTGACTGTATGAGTCAGTATACGCTACATATGCAGGACCgaggctttttttttgtactgttaAACAACCCGTTCAGTATGTTTTAAACCGACTGGCTATTTCATAGGCCCCCTACACCGCTTGGATTCCGTCTCTAGTGGCTCCTCGTTGcgattttcatttttcttttttgggaaataaaataaatctccaGGATGATCTTCGCAAACACAGGCAACCCGCTGAAGACAGCCAATCGTAAACAGTCCTACCCCATGACTCCGTCcagtcccagcagcagcagcaacagcagcagcacaggccTGGAGCAGCTCAGCAAAACCAACCTGTACATCCGCGGCCTGCCTCCTGCCACTACAGACCTGGACCTGGTCAAACTCTGTCACCAGTATGGCAAAATTCAGTCAGCAAAAGCAATCCTGGACAAGACAACCAACAAATGTAAAGGTTACGGCTTTGTGGACTTTGACAGCCCTGCGGCTGCTCTAAAGGCAGTACATGCTTTGAAAACCAGCGGCATACAGGCCCAGATGGCCAAGCAACAGGAGCAGGACCCCACTAATCTGTACATTTCCAACTTGCCTCTTTCTGTGGATGAGAAAGAGTTGGAGAACAtgctgcagcccttcggccaGGTTGTCTCCACCCGGATCCTCCGAGACTACAGCGGTAACAGCCGAGGCGTGGGCTTCGCCAGGATGGACACGACAGAGCAGTGTAATGCAGTCATCTCCCACTTCAATGGGAAGTTTATCAAGATAGCTTCTGGAACTCTGGCTCCCTCTCAGCCCTTGCTGTGTAAGTTTGCAGACAGTCAAAGGAAGAAACATGCTCACAGCGGATTTGTTCCCAATGGACATACAGGGGATCTGAGACTAGGTGCAATGACTCTTACCTATGACCCCTCCTCAGCGGCTATACAGAATGGGTACTATCCTTCTCCGTATCCAATGAACAACAGGATAATGACGATGCAGCCTGCGATGTCTCCCTACATGTCTCCAGTCTCTGCTTACCAGGGTGCTGTGATGTCTCCCTCTGTGGATCCCTCCATGTCAATGCACCCTTCAGCCATGATTACTCAGCAGATGGGCCAGCTGTCACTGGGAAACAATGGAGCGTATATTTCAGCCAACCCTGGTGTCCAGGGAGCTTACATGCCTCAGTATCCTCCCATGCAGGCAGCAGCTGAAAACGGCACGCCGCAACAAGTGGATTCTTCCAACAACTCGTCTCCTTATAGTCAACTCAGCAAGTAATCACAGTTTTGGGCTTGATTCCCGCTCTGTGAGCCTGAGGGCAGGTGGGCAGGTTGCCAATGACATCCCAGGGGTAACAGTCACCGACTTCTCTGATTGGACCAGATACATGAACTTTTTTGCACAGCCCCGATGTTTGTGGTGGAAAATGAGGACAGTGTAAATGGACTCAAGCAGTTGGCTAAtcacaggagagaaaaaaaaaaaaaaaaaaagatttattttgaTAAGAAACAACATGctctttttccccctcttttttcAAGGATTCTCAAACAAATTCCAGAggacccccacccctcccccagtATGATGTGATATTAAAATGCATGAGATTGAggtagtccccccccccccacctccaaGATTTCTATGATTTTATAGTTCCTTTATTTGTGATATATGAAAGAAAAATTTGCAAAACCTTGTTTGCACTGAAGTTTAAAGTTTCAGAATATCCTCATTTTGCTTTTCAAAGTCGCcacaaaatagcttaaaaaaTCAAATCATGTTCAACTGCAATCGACAGCTGATACAGGTGGCCATTTCATTAGGTAATTAATGCATTTATTATTGGAAAAGGTGCCTTCCTTACGTCACATCAAACATTCTCCCACATTTCTTTCATCGAACTTGATCAGGTGTCATATTTCATATCTGATTAATCAAACGTGTGTGTGAAATCATAGAGATTTCCATTGAGTGTTTCGCTATCTAGTCTTCTGGTAGCAATAAAGACAATGAGAGTCCCACGGCAATACTGAGAAAAAAGGTGACAGACTCAGAGCAAGGTAATTCCTTATTTtccctctttccttttttaaaaaatcttcaagacgtgacatgaaaaaaaagagCCGTACTTTTATGAAATTACAAGTTTTACACCCAATGGACATCTTTTAGGAggtttttttgttcttcttgtGGTCAGTTTGACCAATGATCTACCTCATTAGTTCTGCTGGAGTCTGCTGGTGTTATGGGGTTTGCAGGTAAAGCCCCCTTGTTCACCAGAATGGACGAAGCAGAACAAAAGCCACGCTCAGGAGCTGGCTAAATAGGACTTCTGCCCGTCTGTCTCCCACATGCAGCGTTTCTCTTCCTGATCTGTAAAGAAACATTGTGCTTTACTTCGTCTTTATTTGTCATTGCTTCTGTTCTggtgtttctttttctcactaTGATGAGCTTTGTGTGGTTGTGAGGCTCCATTTTAGAGATTCAATGTAAGTCAACTACTAGCTACTCCTTGAAATAGTTGGTTTACAATGTGCTTGAAACAAATGAATGCAGGCtatgtgcatttattttgtacatTCTTCTGCCTTTGCCATTTTAGACAAATCTTAGATGACTCACCACTTCCCCTaaccttttctctttttcctttaaTCTTGGGTTACACTGCTCTCCAAAAATAACGCTAGGATTTGGCCAAATTGTGGTCATTTGGTTATACAGCAGCTTAATTGTGTACATGCCAAACAATTTGGATCTCAAATCTTGcctcatgcaaaaaaaaatttaaaaaaatgcaacaatcaTGTATGAAGTACTTTAAAAGCAGCAGTATTTTACAAGAATTTGATGGAAGTTGAGGTTGGCTTGTTCAGAATAAGATTTGTAAAAATATATGCGTTCAGGGCCAAAAGTGAAGAATAAGTGAGTTGTATtgtttgctttgctttttttttttcttcaaattgatTATTTCTGATGTAAGAACTCTACACTACTATGAGACAAGAAAAATGGTTGAAGCTGTATGGTCGCGGTGCTTTTCCTCGATCAATAATACTGTAGCAGTAAACGCTCACCTTTGGAAAATACAACCAGTAACCTGCTTTTACTGAGTGTGCTTTCCCATTCTGAACTTTTGTTGctgcaaaaaaatttaaaaatgaaaaaaaaaaatcgtgtACATGTTATCCTCATTGCTTCCCCTGTCGCCTTCAACTAATTCTCAAGCAATCTTCTCCTTGCTCTTTCCTTTGAAAACATTGGAATAAAAACCGTGCTGAATAAAAGGCTCTTCTCTTTCTCA

Function

NR:

description
PREDICTED: RNA-binding motif, single-stranded-interacting protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795467.1 True 3562 mRNA 0.43 14 19237252 19256129
XM_039795468.1 False 3518 mRNA 0.43 13 19237245 19256129

Neighbor

gene id symbol gene type direction distance location
atic atic,LOC103365192,LOC102792413 coding upstream 55337 19174192 ~ 19181908 (+)
mnx2b LOC103365191,LOC104967070 coding upstream 68432 19164594 ~ 19168813 (+)
stk16 stk16 coding upstream 104433 19126880 ~ 19132812 (+)
LOC120555834 NA coding upstream 113705 19113966 ~ 19123540 (+)
LOC120555696 NA coding upstream 128182 19104266 ~ 19109063 (+)
itgb6 itgb6 coding downstream 5162 19261291 ~ 19275805 (+)
pla2r1 pla2r1 coding downstream 21024 19277153 ~ 19305912 (+)
ly75 NA coding downstream 52209 19308338 ~ 19342577 (+)
baz2ba baz2b coding downstream 117852 19373981 ~ 19444669 (+)
wdsub1 wdsub1 coding downstream 190041 19446170 ~ 19458999 (+)
G28492 psmd14,LOC107563735 non-coding upstream 6617 19229955 ~ 19230628 (+)
G28479 LOC103359471 non-coding upstream 39018 19196746 ~ 19198227 (+)
G28474 LOC103359471 non-coding upstream 43980 19191772 ~ 19193265 (+)
G28473 LOC103359471 non-coding upstream 46083 19190118 ~ 19191162 (+)
G28465 NA non-coding upstream 80432 19156597 ~ 19156813 (+)
G28526 NA non-coding downstream 66903 19323032 ~ 19344125 (+)
G28571 NA non-coding downstream 208081 19464210 ~ 19464532 (+)
G28572 NA non-coding downstream 208921 19465050 ~ 19465340 (+)
G28573 NA non-coding downstream 210183 19466312 ~ 19466524 (+)
G28574 NA non-coding downstream 210499 19466628 ~ 19468243 (+)
LOC120555697 NA other upstream 150181 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 661303 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1493797 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3750794 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3790753 15441455 ~ 15446492 (+)
G28581 NA other downstream 231117 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 256227 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 515990 19772119 ~ 19993954 (+)
G28770 NA other downstream 1454975 20711104 ~ 20761147 (+)
G28826 NA other downstream 2140084 21396213 ~ 21403450 (+)

Expression


Co-expression Network