aldh1a2 (aldh1a2)


Basic Information

Item Value
gene id aldh1a2
gene name aldh1a2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27039505 ~ 27065888 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795480.1
ATAAACCCAGGAAGAAACCCAAAGTCCTAATCAGAAATCTGTTGAAAAAACCCCGAGAGGCGCAGCAGGCAGACTAGTGGAGAGACGGCCGCGATGACTTCCAGTAAGATCGAGATCCCCGGAGAGGTGAAGAGCGACCCCGCTACTCTCATGGCATCCCTCCAGCTGATGCCTTCACCGGTGCCCAACCCGGAGATCAAGTACACCAAGATTTTCATCAACAATGAGTGGCATGACTCTGTTAGTGGGAAGGTCTTTCCTGCCTACAACCCAGCTACTGGAGAGCAGATCTGTGAGGTCCAGGAAGCAGAAAAGgCTGATGTTGATAAAGCGGTGCAGGCGGCTCGCCTTGCCTTTTCTTTGGGCTCCGTATGGCGAAGGATGGACGCATCTGAGAGGGGGCGTCTTCTGTCCAAACTGGCTGACCTCGTGGAGAGAGACAGTGTCAATTTAGCAACTATTGAGTCACTGAACAGTGGGAAGCCTTTCCTGCCCACCCTGTTTGTGGACCTCCAAGGAACCATAAAGACACTGAGATACTTTGCTGGATATGCAGACAAGATCCACGGCACTTCAATTCCAATGGATGGAGAGTATCTGACATTTACCAGATATGAGCCAATTGGAGTTTGTGGACAAATTATCCCTTGGAACTTCCCTCTGATGATGACAGCATGGAAGCTGGGTCCAGCAATCGCATGTGGAAACACTGTTGTCCTTAAACCTGCTGAGCAGACACCGCTTACCTGCCTCTACATAGCAGCTCTCATCAAGGAGGCCGGGTTTCCACCGGGAGTCATCAATATTTTGCCAGGATTCGGGCCAACGGCAGGAGCTGCGATTGCTTCGCACATGGGCATAGACAAAGTGGCTTTCACAGGATCAACCAAGGTTGGCAAGCTGATCCAAGAAGCAGCTGGGAAGAGTAACCTAAAGAGAGTGACGCTGGAGCTGGGAGGAAAGAACCCCAACATCATCTTTGCAGATGCTGATTTGGATCTAGCTGTAGAACAGGCCCATCAGGGCGTGTTTTTCAACGCAGGCCAGTGCTGCACGGCAGGCTCTCGCATCTTTGTGGAGGAGCCCATATATGATGAGTTTGTTCGGAGGAGTGTGGAGAGAGCCAAGAGGAGGATAGTTGGCAGCCCCTTTGATCCCACCACTGAGCAGGGTCCACAGATCAGTCGGGAGCAGCAGAATCGTGTGTTGGAATTTATCCAGAGTGGTATCAGTGAAGGAGCCAAGATGGAGTGTGGAGGCAAAGCTCTGGGCTTGAAAGGGTTCTACATTGAGCCCACTGTTTTCTCTAACGTGAGGGATGACATGCGCATTGCCAGAGAGGAGATTTTCGGTCCAGTCCAGCAGATCATGAAGTTCAAAACTATCGAGGAAGTGATAGAAAGAGCCAACAACACAGATTACGGTTTGGTTGCTGCTGTATTCACCAACGACATCAACAAAGCCATGACCATATCCACAGCCGTGCAGGCTGGCACTGTCTGGATAAACTGCTTCAATGCTCTCAGCACACAGTGTCCATTTGGAGGATATAAAATGTCTGGCAATGGACGTGAATTgGGAGAAAGCGGCTTGAAGGAGTACTCAGAAGTGAAGACCATCACGATGAAGATGGTCGCCAAGAACTCTTAAGGCAGCCACACTTTCTTGGGGAGGAGGTAGCGTCTTCCTCATCACTGACCCGCCTCTTGTCAGTCCGTCCACGGTGGCAAACGACAATTACTATCAAAACTAGTTATCTCCACGGTAACTACAGGCTGTGTGTGACCACTCACTGCCCTCCCAGTTCCTCCATCAACTCTGCAATGCTCGCAATGGACAGTCAGCTAATCCCTGTCCAGCTATCTCCACCTGCCTTGAGTTTGTGGACTCTCTCCAGTCTAACTGAGTACCACTGAACTACCCCCATAATGTATACCTCCTCCACTAACTACACTAAAGCACTCACAGAGACGATGGGGAGGCTGTTCTGACTGCAAACCCCAATAacaacaccccccacccccacccccgaaATGCTGGATGCTCAGAGACTCAGTCGCCCGCACTTGCAATCAACCCTTTACTAGCAACTTGTCATGTGTTGGGAGGCAGTTATTCTTTGTACTGTGCGGTATGATTGTCAAAAAACCTCATGTTTCATTTTCTTGGTAGAATTTATGCAAGCATGTCAGCTCATTCAAGAACACTGATGTTGTCAGCCTCAGATatgaatggatgaaatgttTATTCAGAATTAAAATGGATTTCTAATTGtctttgtttatattttagcTTGTATGACTTAACACTGTATGTCAACCTTTGACTGATGTAAACGTGAAGATTTTAATCTCTTAAAAGCATTTTACTCTCACCTGCTAAAAGAGGAGTAGATGTATTTTCAACATTATGTAACTGATTTTCATTGATGTCCAtctatgtttatgtttatactATCATATGctataaaattataaaatgac

Function

symbol description
aldh1a2 Predicted to enable aldehyde dehydrogenase (NAD+) activity. Acts upstream of or within several processes, including animal organ development; face morphogenesis; and myelination. Is expressed in several structures, including head; heart; immature eye; mesoderm; and pleuroperitoneal region. Orthologous to human ALDH1A2 (aldehyde dehydrogenase 1 family member A2).

NR:

description
retinal dehydrogenase 2-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K07249 ALDH1A; retinal dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795480.1 True 2483 mRNA 0.48 13 27039505 27065888

Neighbor

gene id symbol gene type direction distance location
adam10a adam10 coding upstream 38069 26969366 ~ 27001436 (+)
sltm sltm coding upstream 94911 26930828 ~ 26944594 (+)
myo1ea myo1e,LOC103362848 coding upstream 148243 26841121 ~ 26891262 (+)
LOC120555610 znf821 coding upstream 241914 26779634 ~ 26797591 (+)
marveld3 marveld3,LOC103375894 coding upstream 337149 26699839 ~ 26702356 (+)
LOC120556070 NA coding downstream 186793 27252681 ~ 27260955 (+)
znf280d znf280d coding downstream 195667 27261555 ~ 27279401 (+)
mns1 mns1,LOC102786898 coding downstream 215524 27281412 ~ 27287556 (+)
prtga prtg,LOC102785529 coding downstream 290380 27356268 ~ 27389367 (+)
ccpg1 NA coding downstream 325234 27391122 ~ 27403314 (+)
G30148 aqp9 non-coding upstream 9951 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 146940 26891684 ~ 26892565 (+)
G30023 NA non-coding upstream 810513 26228729 ~ 26228992 (+)
G30022 NA non-coding upstream 810842 26228430 ~ 26228663 (+)
G30020 NA non-coding upstream 813703 26225565 ~ 26225802 (+)
G30235 cgnl1 non-coding downstream 64288 27130176 ~ 27131908 (+)
G30280 NA non-coding downstream 232941 27298829 ~ 27299567 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding downstream 385450 27451338 ~ 27455971 (+)
G30364 NA non-coding downstream 420916 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 570971 27636859 ~ 27637082 (+)
nfat5b nfat5 other upstream 1111779 25883454 ~ 25927726 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other upstream 1156145 25855839 ~ 25883360 (+)
sox6 sox6,LOC103363464 other upstream 2583817 24320064 ~ 24455688 (+)
plekha7b NA other upstream 2724860 24235723 ~ 24314645 (+)
G29433 NA other upstream 3307034 23727012 ~ 23732471 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 229869 27295757 ~ 27316181 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other downstream 252482 27318370 ~ 27351837 (+)
LOC120555577 NA other downstream 343152 27409040 ~ 27410250 (+)
vrk3 NA other downstream 360400 27426288 ~ 27440414 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other downstream 390528 27456416 ~ 27464759 (+)

Expression


Co-expression Network