LOC120556108 (cpsf7,LOC102795402)


Basic Information

Item Value
gene id LOC120556108
gene name cpsf7,LOC102795402
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24080649 ~ 24085815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795501.1
tttcagtAATTTAGTTATTGTATAATTAATTAAATCAGAATTTAAATAGACCTTGACTCTAGGAACCAAATgtagtttgttgttgttaacCGGTAGAATATTCCTGACGCACTGAAATGTTCACGTACTAAAGACGAACGTTAGCATCATTAGCATTACGTTAGCTGATCAGAGAGCGAGTTCATAGTAACGTTACTATATATAACTAGTTGTACGTTAACTCATACAAAACCGTGCATGTATTTTGAAAGTGttcatttaaatataatttctaGATTTATGTCCGCTTGTCGTATTCTCGGTTTATCGTCATATTTTgatgtagctaacggtagagtATCATATTGTGCGGactcgttagctaacgttaaatgcaaGGCGTAACGTCAACAAAAACGCCTGAATATTGATAGTGCACCTGTCGTCGGTATGCACTGATCATTTGCAAAGTGTGCGAACTACActgaaaacaacacaaacaacccaACTGGCTGCAGTGCCATCAACTGAATCACCGTAGGCCCACGGGATGGCTGCTGCAGGACCTGCAGCTGGACCCAGTACCTCGAAGGACCTCGTAGATCTTTACGGTGACCTGAATCAAAACGACGACGATTTGGACAGAATTGCTGAAGCAAATGAACTTTTTGATGCTGTTCTGACTGGCTCAGTTGATCAGGACAATAAAGTTAAGACACATGTGGTTCCACCATCTAACAAGGAGGCTAAATCAACAATAGTGAAAAGCCAAAAAGAAGGAAACTCACTGAGGAGACTGTCTTTATATATTGGAAATTTCCCCTGGTGGACATCTGATAAGGACATTACATGCATGGCTCAAACGTTGGGTGTGAGGGACATTAAAGAGATCAAATTTGCTGAGAACAAAGTTAATGGCCAGTCAAGAGGCTTTGCCGAAGTGGTGGTAACCTCAGAAGAATCATTAAAAGTAATGTTGGAGAAAATACCTCAATGTCAGCTCAATGGGGAAAGGATAGACTGCCGTTTTGCCACTCGCCAGAATCTCAATTTGTTTGAGGACTTGGCAAATAAACGTATACCCCTGCGTCTGAATTCCAAAGATCCTAAGGACTCCGATACTTTGGATAAGATTCCCTCATTATTATCACAGGAGCCCAGCCCTCCGCCTATACCTCCACTTTTTCCATCACATCCACTTGCAAACAGGTTTCCATCATTACCCACCCCTTACCCTAATCATCCCCCTCCTCCCTTCCCACATATGCCGCCAAACATCCCCCCGCCCATGCCACCCCATTTGTTCCCTCCTCATCCAGTACATGTTCCCATCCAACCACCTCCCAGTCTGCACGTAAATCCAGCATTCTTCACCCCTGCACAAGACGGGCACAGCAGCAAAGCTTACAGCCAACAAAAACACACCCCTCAAAGTACAGATCGAGACTTTGAGGAGCTAATGAACAGAAATAAAGCTGTTGCTAGCAGTGCCATCAGCAAGGCTGTGTCTGGAGCAACAGCTGGGGACTTGCGGGTGGCCATGGAGACTCTGTTAACTGCCATTGCCATCATTAAGCAGTCCAGAGTGTATGGAGATGAACGCTGCCAAGCCCTGGTTACTTCACTCAAAGACTGTCTAGTCTCTATTCAGGGCAACTACGGCTACAGGAGTAGCAGTCGTTCTGGAGACGAAGAAAGATGCCGGGACAGGGGTCGtgacagagagcgagagcgtGACAGGGAACGTGAAAGAGAAGATCCTTTTGGTTGGGAAGGTGCGGGAATGTCTCGAAGACAAAGAGAACATTCCCGGAGTGGGGAGAGGGACAAGGAACGCTCACGGGAACGGGAAAGGGAAAGGCACAGAGATCACAGAGATCATAGAGACCGATACCGCTAACTTGactgatGGCGTGCTGAAGCGTGAAGCCAGGCAGACTTTGTTTCTGCACCAACTTGTATACAAATCTGGTGGAATCTAAGGTGAGACTGAAGATGTATCTCCAAAAGTCTAAAGTGTACTTTTCTGTTCTTCACCAGTTGTCTGTAAATACTGGGACTTTTAcctgttgaaaaaaatgtggtTGTAGATTTGTTGCTTGGACATCAGATTCCAATGCTTGCATGCACAGGAACATCTCTTAAtaacttataaaaaaaacagtgtaacATTTATCACTTTCTTTTGTATTAAATCTaaagattaaaaacacattCCCTGAAAATA

Function

symbol description
cpsf7 Enables RNA binding activity. Involved in mRNA alternative polyadenylation; pre-mRNA cleavage required for polyadenylation; and protein-containing complex assembly. Located in cytoplasm and nucleus. Part of mRNA cleavage and polyadenylation specificity factor complex.

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795501.1 True 2206 mRNA 0.44 9 24080649 24085815

Neighbor

gene id symbol gene type direction distance location
syt7b syt7,LOC101476086,LOC102796193,LOC100697404,LOC108250198,LOC103462425 coding upstream 9500 23970698 ~ 24071149 (+)
sord sord coding upstream 205129 23871057 ~ 23875520 (+)
terb2 NA coding upstream 210428 23867954 ~ 23870221 (+)
LOC120556218 cilp coding upstream 512099 23550192 ~ 23568550 (+)
tmem276b LOC104919254,LOC101064922,LOC103364365,LOC104940771,LOC103378694 coding upstream 726448 23345487 ~ 23354201 (+)
dagla dagla coding downstream 7428 24093243 ~ 24125820 (+)
ext2 ext2 coding downstream 41645 24127460 ~ 24149905 (+)
caprin1a LOC103356992,LOC104943339 coding downstream 120896 24206711 ~ 24222446 (+)
LOC120556334 LOC104919371,LOC103363468,LOC104965174,LOC102308327 coding downstream 531741 24617556 ~ 24621883 (+)
copb1 copb1 coding downstream 602211 24688026 ~ 24700170 (+)
G29460 NA non-coding upstream 118317 23960107 ~ 23962332 (+)
G29441 NA non-coding upstream 201207 23816706 ~ 23879442 (+)
G29438 NA non-coding upstream 336760 23742705 ~ 23743889 (+)
G29432 NA non-coding upstream 357999 23721197 ~ 23722650 (+)
G29421 NA non-coding upstream 463703 23615596 ~ 23616946 (+)
G29477 NA non-coding downstream 64695 24150510 ~ 24150755 (+)
G29535 nucb2,LOC103363466,LOC101472988,LOC102310665,LOC105916282,LOC101163155,LOC107085590 non-coding downstream 141036 24226851 ~ 24227916 (+)
G29579 NA non-coding downstream 517167 24602982 ~ 24605198 (+)
G29685 NA non-coding downstream 1012355 25098170 ~ 25099593 (+)
G29747 NA non-coding downstream 1135231 25221046 ~ 25221437 (+)
G29433 NA other upstream 348178 23727012 ~ 23732471 (+)
igdcc3 igdcc3 other upstream 563386 23443149 ~ 23517263 (+)
G29292 NA other upstream 943622 23136732 ~ 23137027 (+)
LOC120555548 LOC103365626,LOC104942698 other upstream 1086485 22981783 ~ 22994164 (+)
ankrd11 ankrd11 other upstream 1185642 22764719 ~ 22895007 (+)
plekha7b NA other downstream 149908 24235723 ~ 24314645 (+)
sox6 sox6,LOC103363464 other downstream 234249 24320064 ~ 24455688 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other downstream 1770024 25855839 ~ 25883360 (+)
nfat5b nfat5 other downstream 1797639 25883454 ~ 25927726 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 3209942 27295757 ~ 27316181 (+)

Expression


Co-expression Network