ext2 (ext2)


Basic Information

Item Value
gene id ext2
gene name ext2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24127460 ~ 24149905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795507.1
CAACAATTTTCCTTCCCGTAGCCCTATCGTTAGCTTGATGCTAGGTTAGCATTAACACTGTATTTACAAGTGTAGCCTGTTTTCTAACCGTTGTCATGAATTAACACCGAACCGTTGAACCCTGTTCCGTTTAACGTCTCGTGGCTGGTCGGAGAGAGGTGTCAGCCATGTATGCCTCTGGGAAATACAGCTCGCGGGGCCCTGCTCTCATCCCGCGGATGAAAACCAAGCACCGCATATACTACATAACCCTCTTTTCTGTGGTGCTGCTTGGACTCATTGCCACCGGGATGTTTCAGTTCTGGCCCCACTCCATTGAGTCCGCAGCTGACTGGACCCTTGATAAACGCAGTGTTCATGACGCACCTCTGGTCCGCCTGCCTGTCTCCAGTCCCATTCCTGAGAGGGGGGACCTCAGCTGTCGCATGCACACCTGTTTTGACGTGTACAGATGTGGCTACAATCCTAAAAACAGAATCAAGGTGTACATCTACCCTCTGCAGAAGTTTGTGGATGAATTGGGGGTTCCTATCAGCAGCACTGGACTGTCCCGAGAATACAATGACCTGCTCAGTGCCATATCTGACAGTGACTTTTACACTGACGATGTCACCAGGGCTTGTCTTTTTATTCCATCTATTGATGTGCTGAACCAGAACTCCCTGCGTATCAGAGAGACTGCCCAGGCTCTGACAATGCTACCCAGATGGGACAAAGGGATGAATCACCTACTTTTCAACATGTTACCTGGAGGTCCTCCAGACTACAATACTGCCTTGGATGTTCCCAGAGACAGAGCGCTGCTGGCTGGAGGTGGTTTCTCTACATGGACCTACAGACAAGGTTATGATGTCAGCATCCCAGTTTACAGCCCCCTCTCTGCGGATGTTGAGCTGCCTGAGAGACAGCCAGGGCCACGGCACTACTTTATTCTGTCCTCTCAAACTGCTATCCACCGAGAGTACCGTGCTGAACTGGAGCGCCTGAAGGAAGAAAATGGAGAAGCTCTGCTCCTCCTGGACAAGTGTAGCAACCTCTCTCAGGGTGTTGCCTCTGCACGTAAACGCTGCTACAAGGGACAGGTGTATGACTAcccacagatcctgcagGAGTCTTCATTCTGTGTGGTTTTGCGAGGGGCCCGTTTGGGTCAGGCTGCCCTCAGTGATGTGCTGCAGGCTGGCTGTGTCCCTGTTATCCTCGCTGACTCCTACATACTGCCTTTCTCTGAAGTTCTTGATTGGAAAAGGGCATCAGTGGTTATTCCAGAGGAGAAGCTATCAGAGATGTATACCATCCTAAAGAGTATTCCTCACAGACAAGTTGAAGAGATGCAAAGACAGGCACGCTGGTTCTGGGAGGCCTACTTCAGCTCCATGAAGGCTATTGGCTTGACAACGCTCCAGATCATCAATGACCGCATCTACCCATATGCTGCACGAACTTACGAGCAGTGGAACAATCCACCTGTGGTGAAGTGGTCCAGTGTGAACAGCCCTCTGTTCTTGCCACTAATCCCGCCAAGGGCACCTGGTTTCACAGCAGTGGTGCTGACCTACGATCGGGTTGAGAGTCTTTTCCGCGTCATCACAGAAATCTCCAAGGTGCCTAGCTTGGCTAAGCTGCTGGTGGTGTGGAATAACCAGAACAAGAGTCCTCCTGAGGAGTCTCTATGGCCAAAGATCGGTGTTCCTCTCAAAGTCGTGCGAACCAAAGAGAACAAGCTGAGTAACCGCTTCTTCCCCTACGACGAGATTGAGACAGAAGCTGTGTTAGCGattgatgatgacatcatcatgcTGACATCTGATGAACTGCAGTTTGGTTACGAGGTATGGAGGGAGTTCCCAGACAGGCTGGTGGGCTACCCCGGCCGGCTGCACCTTTGGGACCATGAAATGGGGAAGTGGAAGTACGAGTCGGAGTGGACCAACGAGGTCTCCATGGTCCTAACTGGAGCCGCCTTCTACCACAAGTACTTCAACTATTTGTACACATACAAGATGCCAGGAGACATCAAGAACTGGGTGGACGCTCACATGAACTGTGAAGATATTGCCATGAACTTCCTGGTGGCTAACATCACGGGAAAAGCCCCCATAAAGGTGACCCCCAGGAAGAAGTTCAAGTGCCCTGAGTGTACTGCCATTGATGGACTGTCCCTGGATCAGACACACATGGTGGAAAGATCTGAGTGCATCAACAAGTTTGCATCAGTTTTTGGTACAATGCCTCTGAAGGTGGTGGAACACCGTGCAGACCCGGTGCTTTATAAAGACGACTTTCCAGAGAAGCTCAAGAGCTTCCCCAACATCGGCAGCCTCTGACCAGCCTGTAACAGATGTTTGGATCCCGTTACAGCCTCAACACTTAAAACATGAAAGATGTCAATATTCAGACTAAAGTAATACATGCTTATGTCACCGCTCAGTTCAAGTGACTTTCACTTTGATTTTTAGATTAAATTTAAAAGGCAGAATTGTACTGGACATTAAGTTAATATCTTGAGGACCCTGGAATCTGGGGATGGTGATGAGTGTGTTTTAGAATGATTTGTTTATTTGGCTTAAAGTGAAAGATATTGtcaaacatttacaaatatgAATGATAACACTAATGTTGCATGAACTGCCATTGGAGGGTCACGCTGAGTCTCTCGTGTTTGATGGATTGGGGGCTTGTGGTACCTCACTGTTACTGTTTTTGGAGCTGGAAACTGTGAGCTCCAGCTGCTCTGGAATCAGcgtatacagtgtatatatttgtattttgcagCAGTGCTGTATAATAGTCATAATTTATGATGCCaactaggattttttttttctttatctcaaATGAGGACATTGACCTGGTTCTTTTAGCTATACTGTATTAAAGTAATGTTTAATTTACatgatatatactgtagtaaACAATTCAATGACATATCTTTGTAGGCTTTATCTAATGGTTAACTGAATGTGATAACACACAGCATACAACAACAGATGCTGTACAGTAAAGGTTTCACATACGTTCTGTTTTAATCAGATTAGACAAAGCTGGTACCATAAATCTAATATTTAGAGCGAGTAACTGCTGATTTTAAAAGATTGATACTGAGCtgattttttttactgcttGAGCAAGCCTTTCATGACACTTAGTTATTTTATGAGGGGAGTTATGTGTATGAACACTGCATAAACAAAGGAGTAATTATTTGTTTGCCATGCATTTGAAGACGCGTACTGTATAGTGAATGATAGACaatctccaaatccacactttCAAAAACCAGTGTGTATAAACTGTTCATGCaatgctttgtttttatttttccgaatacctgttgtgtgtgttttatatttttgtcctTTTCATCACTCGTTGTCCCAGCTCCAGTATTTAGGCTATAACATTGGGAGCAGTGCAGTATTTAATGTTAACATTTCCTTGTGGTGgtttcattttcctttttttattttcataatgtCAGTGAAATTGTTCTAAATGTTTTGACTGAGATTATGTGGCGTATATATGAGTTTGTAAAGTAAAGACCACGCTAATATCTCT

Function

symbol description
ext2 Predicted to enable N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity and acetylglucosaminyltransferase activity. Acts upstream of or within several processes, including animal organ development; axon guidance; and proteoglycan biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system and pectoral fin musculature. Used to study hereditary multiple exostoses. Orthologous to human EXT2 (exostosin glycosyltransferase 2).

NR:

description
PREDICTED: exostosin-2

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0042476 odontogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030516 regulation of axon extension biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K02367 EXT2; glucuronyl/N-acetylglucosaminyl transferase EXT2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795507.1 True 3561 mRNA 0.45 15 24127460 24149905

Neighbor

gene id symbol gene type direction distance location
dagla dagla coding upstream 1640 24093243 ~ 24125820 (+)
LOC120556108 cpsf7,LOC102795402 coding upstream 41645 24080649 ~ 24085815 (+)
syt7b syt7,LOC101476086,LOC102796193,LOC100697404,LOC108250198,LOC103462425 coding upstream 56311 23970698 ~ 24071149 (+)
sord sord coding upstream 251940 23871057 ~ 23875520 (+)
terb2 NA coding upstream 257239 23867954 ~ 23870221 (+)
caprin1a LOC103356992,LOC104943339 coding downstream 56806 24206711 ~ 24222446 (+)
LOC120556334 LOC104919371,LOC103363468,LOC104965174,LOC102308327 coding downstream 467651 24617556 ~ 24621883 (+)
copb1 copb1 coding downstream 538121 24688026 ~ 24700170 (+)
rras2 rras2 coding downstream 552952 24702857 ~ 24737053 (+)
tub tub,LOC102789439 coding downstream 588723 24738628 ~ 24787768 (+)
G29460 NA non-coding upstream 165128 23960107 ~ 23962332 (+)
G29441 NA non-coding upstream 248018 23816706 ~ 23879442 (+)
G29438 NA non-coding upstream 383571 23742705 ~ 23743889 (+)
G29432 NA non-coding upstream 404810 23721197 ~ 23722650 (+)
G29421 NA non-coding upstream 510514 23615596 ~ 23616946 (+)
G29477 NA non-coding downstream 605 24150510 ~ 24150755 (+)
G29535 nucb2,LOC103363466,LOC101472988,LOC102310665,LOC105916282,LOC101163155,LOC107085590 non-coding downstream 76946 24226851 ~ 24227916 (+)
G29579 NA non-coding downstream 453077 24602982 ~ 24605198 (+)
G29685 NA non-coding downstream 948265 25098170 ~ 25099593 (+)
G29747 NA non-coding downstream 1071141 25221046 ~ 25221437 (+)
G29433 NA other upstream 394989 23727012 ~ 23732471 (+)
igdcc3 igdcc3 other upstream 610197 23443149 ~ 23517263 (+)
G29292 NA other upstream 990433 23136732 ~ 23137027 (+)
LOC120555548 LOC103365626,LOC104942698 other upstream 1133296 22981783 ~ 22994164 (+)
ankrd11 ankrd11 other upstream 1232453 22764719 ~ 22895007 (+)
plekha7b NA other downstream 85818 24235723 ~ 24314645 (+)
sox6 sox6,LOC103363464 other downstream 170159 24320064 ~ 24455688 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other downstream 1705934 25855839 ~ 25883360 (+)
nfat5b nfat5 other downstream 1733549 25883454 ~ 25927726 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 3145852 27295757 ~ 27316181 (+)

Expression


Co-expression Network