cry5 (LOC103354946,LOC104961892)


Basic Information

Item Value
gene id cry5
gene name LOC103354946,LOC104961892
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 33254629 ~ 33262933 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795558.1
TGGCTGATTTTGCTAGTGACGTTGTGATTCAGCTTCCCGTTTTGTAACACAAGTCAACGTGCCACTGGTTACCAAACATCATCGACCAAGTGGTATTCTAACTGTTTATGGTTTTAAGGCACTATTAAGGTTCACAAGGCATGGCTCATACATGTATTCACTGGTTCCGCAAGGGACTCAGATTGCACGACAATCCAGCACTGATGGCTGCTTTGAGGGACTGTAAGGAACTGTACCCTGTGTTCATTCTGGACCCTTACCTCCATAACAACACCTGTGTGGGTATCAACCGCTGGAGGTTCCTCGTCGGAGCCCTCATAGATCTGGACTGCAGCCTCAGGAAACTCAACTCCAGGCTGTTTGTTGTGAGAGGGAAGCCCGAGGAAGTGTTCCCCAAGCTGTTCGACAAGTGGAAAGTAACAAAGTTGACCTATGAGTATGACACAGAGCCCTACAGCCTGAGCAGGGACAAAACAGTGACCACACTGGCCAAAGAACATGGAGTCGAAGTCATCTACAAGATCTCACACACTCTTTATGATATAGACAGGATAATTGAGGAAAACAATGGGAAGGCTCCCCTTACTTATAATCGAATGCGGGCAATAGTGAAGACTCTTGGTCCCCCTAAGAGACCCATCCCAGCTCCAATCATGGAAGATACAAAAGATGTGAAGACGCCTTGTTCAGAAAACAGTGAAGAAATGAAGAAATATGGAATCCCTACGCTTGAGGAGCTCGGCCAGGACACGGCAGCTCTTGGACAGGAGCAGTTCCCAGGAGGAGAACAGGAGGCTCTGAGGAGACTAGATGAACATATGCAAAGAACGGGATGGGTGTGTGGCTTTGAGAAGCCGCAGACTTCTCCGAACTCTTTGAGCCCCAGCACCACTGTCCTCAGTCCATACGTCACTTTTGGCTGTCTGTCTGCACGCACCTTCTGGTGGAGGCTGACCGATGTCTATCAGGGGAAGAAGCACTCAGATCCTCCAGTTTCCCTGCATGGCCAGCTACTGTGGAGAGAGTTCTTCTACACCGCTAGTGTGGGTATCCCTAACTTTGACAAGATGGAAGGCAACCCTGTGTGTACCCAGGTGGATTGGGACACAAACCCCGATTATCTGGCTTCGTGGAGAGAGGCTCGGACTGGTTTCCCCTTCATCGATGCCGTCATGACTCAGTTGAGACAGGAGGGCTGGATCCACCACCTGGCCAGACATGCTGTTGCTTGTTTTCTCACCAGAGGAGATATGTGGATCAGCTGGGAAGAAGGGCAGAAGGTGTTTGAGGAGCTTTTATTGGATGGCGACTGGGCTCTGAATGCTGGAAACtggcagtggctctcagcgaGTGCCTTCTTCCACCAGTTCTTCAGAGTCTACTCCCCTGTCGCATTTGGCAAGAAGACAGACAAAAATGGAGATTACATCAAAAAGTACCTTCCTCTTCTGAAGAAGTTCCCGGCCCAGTACATCTATGAGCCTTGGAAAGCTCCACGCAGTATCCAGCAGGCAGCAGGATGCATTGTGGGGCAAGACTACCCACATCCCATAGTTCAGCATGAAGTGATCAGCAAAAAGAACATCCAGAGGATGAAGTTAGCTTATGCCAAGAGAGCAGACCTTGCTGAATCACCCAACAAATCACCCAGCAAAAAACAAGGTGTAAAGCGCAAGGCTCCATCTGTCATTGACATGATGAAgaagaaagatagaaaaaagtaatagtacacAGATGAATGCAAAGCAATAGGGTTATTGTGTGATCTATGACTGTTCATCAGAAATCCCTGAATATATACGGTTTGTCTCATTTATGTGTGCCGGCAGTCTACAATGTCtactttttttattacacaCTTCATTaccattttatattttgaattctgtttttattttgcatattgtatttatttcaatGCTTAAAGTGATTGTTACAGGTTATACTTGAATGTTTCTTGCCTGGTGATTAAGTTAAAATGTATCAGGATTGATGGTCTCATCATGTTCAAGGCTGCAGTTTGTATTGAGACGAGGTTGTGTCTGCTTCAAGTTgacctttttattgttttctgtaACTAAAATGATATCTTGCCttactattttttttactatttacaTTATATGTCTGCTCCAGTGTTATCGAATCCGATTATTACAAATGCCTATTTTATCAA
>XM_039795559.1
AGAGTACTAACCACTATACGATCACGGCGAGCTACGATGGGCTggtaggtttctcattgcgacAACGCCATATGTTGAATAGCACAAGATCTCAGCGTGTTGTGGTTCACAAGGCATGGCTCATACATGTATTCACTGGTTCCGCAAGGGACTCAGATTGCACGACAATCCAGCACTGATGGCTGCTTTGAGGGACTGTAAGGAACTGTACCCTGTGTTCATTCTGGACCCTTACCTCCATAACAACACCTGTGTGGGTATCAACCGCTGGAGGTTCCTCGTCGGAGCCCTCATAGATCTGGACTGCAGCCTCAGGAAACTCAACTCCAGGCTGTTTGTTGTGAGAGGGAAGCCCGAGGAAGTGTTCCCCAAGCTGTTCGACAAGTGGAAAGTAACAAAGTTGACCTATGAGTATGACACAGAGCCCTACAGCCTGAGCAGGGACAAAACAGTGACCACACTGGCCAAAGAACATGGAGTCGAAGTCATCTACAAGATCTCACACACTCTTTATGATATAGACAGGATAATTGAGGAAAACAATGGGAAGGCTCCCCTTACTTATAATCGAATGCGGGCAATAGTGAAGACTCTTGGTCCCCCTAAGAGACCCATCCCAGCTCCAATCATGGAAGATACAAAAGATGTGAAGACGCCTTGTTCAGAAAACAGTGAAGAAATGAAGAAATATGGAATCCCTACGCTTGAGGAGCTCGGCCAGGACACGGCAGCTCTTGGACAGGAGCAGTTCCCAGGAGGAGAACAGGAGGCTCTGAGGAGACTAGATGAACATATGCAAAGAACGGGATGGGTGTGTGGCTTTGAGAAGCCGCAGACTTCTCCGAACTCTTTGAGCCCCAGCACCACTGTCCTCAGTCCATACGTCACTTTTGGCTGTCTGTCTGCACGCACCTTCTGGTGGAGGCTGACCGATGTCTATCAGGGGAAGAAGCACTCAGATCCTCCAGTTTCCCTGCATGGCCAGCTACTGTGGAGAGAGTTCTTCTACACCGCTAGTGTGGGTATCCCTAACTTTGACAAGATGGAAGGCAACCCTGTGTGTACCCAGGTGGATTGGGACACAAACCCCGATTATCTGGCTTCGTGGAGAGAGGCTCGGACTGGTTTCCCCTTCATCGATGCCGTCATGACTCAGTTGAGACAGGAGGGCTGGATCCACCACCTGGCCAGACATGCTGTTGCTTGTTTTCTCACCAGAGGAGATATGTGGATCAGCTGGGAAGAAGGGCAGAAGGTGTTTGAGGAGCTTTTATTGGATGGCGACTGGGCTCTGAATGCTGGAAACtggcagtggctctcagcgaGTGCCTTCTTCCACCAGTTCTTCAGAGTCTACTCCCCTGTCGCATTTGGCAAGAAGACAGACAAAAATGGAGATTACATCAAAAAGTACCTTCCTCTTCTGAAGAAGTTCCCGGCCCAGTACATCTATGAGCCTTGGAAAGCTCCACGCAGTATCCAGCAGGCAGCAGGATGCATTGTGGGGCAAGACTACCCACATCCCATAGTTCAGCATGAAGTGATCAGCAAAAAGAACATCCAGAGGATGAAGTTAGCTTATGCCAAGAGAGCAGACCTTGCTGAATCACCCAACAAATCACCCAGCAAAAAACAAGGTGTAAAGCGCAAGGCTCCATCTGTCATTGACATGATGAAgaagaaagatagaaaaaagtaatagtacacAGATGAATGCAAAGCAATAGGGTTATTGTGTGATCTATGACTGTTCATCAGAAATCCCTGAATATATACGGTTTGTCTCATTTATGTGTGCCGGCAGTCTACAATGTCtactttttttattacacaCTTCATTaccattttatattttgaattctgtttttattttgcatattgtatttatttcaatGCTTAAAGTGATTGTTACAGGTTATACTTGAATGTTTCTTGCCTGGTGATTAAGTTAAAATGTATCAGGATTGATGGTCTCATCATGTTCAAGGCTGCAGTTTGTATTGAGACGAGGTTGTGTCTGCTTCAAGTTgacctttttattgttttctgtaACTAAAATGATATCTTGCCttactattttttttactatttacaTTATATGTCTGCTCCAGTGTTATCGAATCCGATTATTACAAATGCCTATTTTATCAA

Function

NR:

description
cryptochrome-1-like isoform X1

GO:

id name namespace
GO:0009416 response to light stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0003914 DNA (6-4) photolyase activity molecular_function

KEGG:

id description
K02295 CRY; cryptochrome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795558.1 True 2176 mRNA 0.45 11 33254629 33262581
XM_039795559.1 False 2151 mRNA 0.46 11 33254629 33262933

Neighbor

gene id symbol gene type direction distance location
alpk3b NA coding downstream 4023 33237294 ~ 33250606 (-)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 23646 33222310 ~ 33230983 (-)
nmbb nmb,LOC102778922 coding downstream 34773 33218994 ~ 33219856 (-)
tspan3b LOC103354951,LOC103379383,LOC100690696,LOC102779206 coding downstream 39930 33209144 ~ 33214699 (-)
nfatc3a nfatc3 coding downstream 368760 32817597 ~ 32885869 (-)
LOC120556152 LOC103374289,LOC104951771,LOC103354964 coding upstream 90928 33353861 ~ 33360306 (-)
LOC120556151 LOC103374288,LOC102776139,LOC100696842 coding upstream 99879 33362812 ~ 33390311 (-)
si:ch211-107o10.3 LOC103374877 coding upstream 149732 33412665 ~ 33418903 (-)
LOC120555331 NA coding upstream 367130 33630063 ~ 33635491 (-)
bcl2l10 bcl2l10,LOC102794833 coding upstream 460928 33723861 ~ 33728257 (-)
LOC120556104 NA non-coding downstream 157651 33092815 ~ 33096978 (-)
G31650 LOC103354965,LOC101471800,LOC102779778,LOC100700520,LOC108237345 non-coding downstream 170149 33081722 ~ 33084480 (-)
G31636 LOC105930492 non-coding downstream 235887 33012880 ~ 33018742 (-)
G31624 NA non-coding downstream 257208 32934711 ~ 32997421 (-)
G31704 NA non-coding upstream 2385 33265318 ~ 33265675 (-)
G31705 NA non-coding upstream 66680 33329613 ~ 33333019 (-)
G31706 NA non-coding upstream 70165 33333098 ~ 33333938 (-)
G31707 NA non-coding upstream 71021 33333954 ~ 33335405 (-)
G31820 NA non-coding upstream 451367 33714300 ~ 33715276 (-)
G31602 ddx28,LOC106597432 other downstream 360224 32891499 ~ 32894405 (-)
cdc42se2 cdc42se2,LOC103398548 other downstream 1137379 32108572 ~ 32117250 (-)
fam120b fam120b,LOC104944276 other downstream 2722487 30515255 ~ 30532142 (-)
LOC120556497 csmd1,LOC102783723 other downstream 3288882 29617320 ~ 29965747 (-)
elp4 elp4,LOC103373817 other downstream 3793393 29402035 ~ 29461236 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other upstream 79314 33342247 ~ 33353448 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other upstream 173878 33436811 ~ 33471335 (-)
serf2 NA other upstream 303438 33566371 ~ 33569379 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other upstream 543985 33806918 ~ 33816388 (-)
G31955 NA other upstream 1227727 34490660 ~ 34599541 (-)

Expression


Co-expression Network