LOC120556152 (LOC103374289,LOC104951771,LOC103354964)


Basic Information

Item Value
gene id LOC120556152
gene name LOC103374289,LOC104951771,LOC103354964
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 33353861 ~ 33360306 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795564.1
GTGACTCTCTCACAGCTTGTTGGAGTCCGGGGCGAGTATGGCGCTCGGTATAGTTTGGTTCATCAGCACCGTGTTTAGTTTAGTTCATTTAACGCCGTTAGATTTGTCCAAAGAGGAATATGGATTCAAACAGTGGATGTCACAGCACAACAAGGTTTATGACATTGAGGAGTATTACCACCGGCTCCACATATTCACTGAGAATAGGAGGGAAATTGATCATCATAATGCTGGGAATCATTCATTCACAATGGGACTGAATCAGTTCTCAGACATGACATTTGAGGAATTCAGGAAATTATTCCTCTTGACAGAGCCTCAGAACTGCTCAGCTACTACAGGGGGTCATGTCAACAGGGCTGGTTCTTATCCCGAGTTTGTAGACTGGAGGATGAAGGACAACGTTGTGACTCCCGTGAAAGACCAGGGTCACTGTGGAAGCTGTTGGACCTTCTCTACTACTGGTTGTTTGGAGTCTGTGAATGCTATCGTTACCGGGAAGCTAATACCTCTGTCTGAGCAGCAGCTGATAGACTGTGCCAGAGACTTCAACAATTATGGATGCATGGGTGGCCTCCCCAGCCAGGCATTTGAGTACATCAAATACAACAAGGGTCTTATGACAGAGGAGGACTATCCCTATAAAGGCcatGATGACAGTTGCCATTTTGACCCTACACTTGCAGCTGCTTTTGTCCTGGATGTTGTCAACATAACAAGTTATGATGAAAAGGCCATGGTTGATGCTGTGGCCCGGCTCAACCCTGTGTCTTTCGCCTTTCAAGTCACGGCTGATTTTAAGCACTACAAAGAAGGTGTTTACACAAGCACTCAGTGTAAGAACACAGCAGACATGGTGAATCATGCAGTCCTGGCTGTGGGTTACGGCGCTGAGGAGAGCGGCATGCCATATTGGATTGTGAAGAACTCTTGGGGCACAGCCTGGGGAATGGATGGATATTTTTTGATCGAGCGAGGGAAAAACATGTGTGGACTGGCTGCATGCTCTTCCTACCCTCTACTTTTAGTTTGAGGAGTAACATGGCAACAAAGTGGACGACTGATAAAACTCAGTAAAATGTCACCCAGTGACAATGTAGTGAACTCGATGGGAAGTTGGCCCTTCCATGTTCCCTGAAGTGTTTTATGTAGAGGTTTGATTTCTCAGCAATATGTACAATACTATCTGAAAttttaaactgttaaaaaaatgtaatctttgtgTGTCACACTCTCAACATTACTGTGTGgtgcatttgtttttgtattgatGTAACTATGGCTGGCTTGTTTTAGTGGAAGTTGTTACCTATTGTTCTTTTGTTTCATAATGTGGTTGTTGAGACAATTACTGCTGTTAATGACCacacaaagaaaatgtattaaatcaTATGTTGCCTACCCCTGTACAGAGGCTTGTACCATGCACTACCTTTTAAGTAACAGCATTGGAAAAACACACGAGAAGCAGCCACCTTACCAGTGGTAACATGATGTAACATGCATAGTGCTATACTGAGAAATAGACATCTCTTCAGACCAATGAGATCATGTTATGGCAGATCATGCATGGGTCATTTACTTAATTTGTCAGTGAGTGGTCTCTTTATGGCTTCATAACATCCACAGTTCTGTATCTCCTCTGCTCCGATTATGAAACTTTAGTCATGCACAAAAAGCCCAATGAGGAGTAAACTCTGATGTCAAGTCATTTGCTAAGTaaagtttgttttcatttgaacATGTTTTGTTAATAAACAATGTTTCCATCACG

Function

NR:

description
PREDICTED: pro-cathepsin H-like

GO: NA

KEGG:

id description
K01366 CTSH; cathepsin H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795564.1 True 1774 mRNA 0.43 12 33353861 33360306

Neighbor

gene id symbol gene type direction distance location
cry5 LOC103354946,LOC104961892 coding downstream 90928 33254629 ~ 33262933 (-)
alpk3b NA coding downstream 103255 33237294 ~ 33250606 (-)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 122878 33222310 ~ 33230983 (-)
nmbb nmb,LOC102778922 coding downstream 134005 33218994 ~ 33219856 (-)
tspan3b LOC103354951,LOC103379383,LOC100690696,LOC102779206 coding downstream 139162 33209144 ~ 33214699 (-)
LOC120556151 LOC103374288,LOC102776139,LOC100696842 coding upstream 2506 33362812 ~ 33390311 (-)
si:ch211-107o10.3 LOC103374877 coding upstream 52359 33412665 ~ 33418903 (-)
LOC120555331 NA coding upstream 269757 33630063 ~ 33635491 (-)
bcl2l10 bcl2l10,LOC102794833 coding upstream 363555 33723861 ~ 33728257 (-)
gnb5b gnb5,LOC104927313,LOC101156727,LOC108237408,LOC102225297 coding upstream 370828 33731134 ~ 33744672 (-)
G31707 NA non-coding downstream 18456 33333954 ~ 33335405 (-)
G31706 NA non-coding downstream 19923 33333098 ~ 33333938 (-)
G31705 NA non-coding downstream 20842 33329613 ~ 33333019 (-)
G31704 NA non-coding downstream 88186 33265318 ~ 33265675 (-)
LOC120556104 NA non-coding downstream 256883 33092815 ~ 33096978 (-)
G31820 NA non-coding upstream 353994 33714300 ~ 33715276 (-)
G31822 NA non-coding upstream 356413 33716719 ~ 33718580 (-)
G31862 NA non-coding upstream 495592 33855898 ~ 33856166 (-)
G31881 NA non-coding upstream 819599 34179905 ~ 34180494 (-)
G31906 NA non-coding upstream 925982 34286288 ~ 34287080 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other downstream 413 33342247 ~ 33353448 (-)
G31602 ddx28,LOC106597432 other downstream 459456 32891499 ~ 32894405 (-)
cdc42se2 cdc42se2,LOC103398548 other downstream 1236611 32108572 ~ 32117250 (-)
fam120b fam120b,LOC104944276 other downstream 2821719 30515255 ~ 30532142 (-)
LOC120556497 csmd1,LOC102783723 other downstream 3388114 29617320 ~ 29965747 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other upstream 76505 33436811 ~ 33471335 (-)
serf2 NA other upstream 206065 33566371 ~ 33569379 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other upstream 446612 33806918 ~ 33816388 (-)
G31955 NA other upstream 1130354 34490660 ~ 34599541 (-)
cylda cyld other upstream 3499241 36859547 ~ 36882795 (-)

Expression


Co-expression Network