si:ch211-107o10.3 (LOC103374877)


Basic Information

Item Value
gene id si:ch211-107o10.3
gene name LOC103374877
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 33412665 ~ 33418903 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795565.1
TCCGCACAGGGTATCGTCTTTAGAGAGAGGAGGAACCGAACACCCTTCTTACTGTCTATGGGAACACCTCGGCTTTGACAGCGTTTGACCTTTCGTCCAATGAACTGCGCAGTATTATTTGAAACCGGCAGAGTTTTTACTTACATTTTGTAATAATCTTACCACTGAAGTGATTTGAGTTGGTTAACAGGCTAAAATATGCAAAACTACGCAGAGTCAATCAAGAACTTTGTAGAGAGTCATGCGACCGGTCTCACTGTTGCTTTTGTTGCAGGGGCAGGCGTACTGGCCTTGCGCAGATGGATGGCTGGTGGAGTGTGTCGGAGCAAGGTCAGGCTGGATGGGAAAACAGTCCTGATCACAGGAGCCAACACTGGCATTGGGAAGGAGACGGCCCTGGATATGGCCCAGCGAGGAGCCAGAGTGATCCTAGCCTGCAGAGATATGACCAGAGCCCGCATTGCAGCTGATGATATCCGGCAACAAAGTGGAAACGGTAACGTGGTGGTAAAGAAACTGGATCTCGCCTCACTGCAGTCTGTTAGGGACCTGGCCAAAGATGTCCTGGAGAATGAAGAACGTTTGGACATCCTCATCAATAATGCAGGTATCATGATGTGTCCTAAGTGGAAGACTGAGGATGGCTTTGAAATGCAGTTTGGTGTCAACCACCTGGGACATTTTCTCCTCACCAACTGTCTTCTTGACCTGCTGAAGAAGTCAACTCCAAGTCGCATTGTCATCGTCTCCAGCCTGGCACACGAGAAAGGCCGTATACACTTTGATGACATCAACCTTGATAAAAACTATCAACGTGAGGTGAGCTATCGCCAAAGCAAGCTGGCCAATGTGCTCTTCTGCAGAGAACTGGCTTCAAGACTGCAAGACACTGGTGTGACAGTGTACAGTCTTCACCCTGGGGTCATTCGCACGGAATTAGGCCGCCACTTGTTCCCTACTTTAGCTCTGTGGCAGAGGATCATAGCCACGCCATTTTTCATGCTGATCAAAAGTCCCTGGGAAGGAGCTCAGACCAGCATCTACTGCGCTGTGGATGAGAGCCAGGCAAACGTCAGTGGCCTCTACTACAGTGACTGTGCCTCCAAAACGCCGGCACCGCAAGCCCTTGATGATGCTACGGCCAAGAAGCTGTGGGACTTCAGTGCTTCCATGGTTGGTCTAGCTTAAACACTAAATCACCTACTCTaactgctggagtcagctgccCTGTTTTCTCATGTGAATCAATAAGGGCAAATTAGGTTTATCATCTAATGGGTATAGGCATTGCATTATATGATGATTTTACCTGTTCAGATCTTTTAGACCTAGATGATGAGTATAACATTTTGCACTATTTAATCTTAGACCCCAGTTAGTTGATTGAATATTAATCTTAGGTATATTGCTTCATCTTTATGTTATCCAGATGCTGCATTATGATTTCTGCTTAATTGTATAGCTATGGTGTGCTGCTATATCCCTATCAAAATGAGGCAATACTTGCTTTTTAATTGACCATGTGATTGTTTGCATTCCAATGAGCAATTGCGAATTCTAAAATGCTTATGGGCCAAATTATCTGGCATTTTGTCATCATATGATTTGTGCTGCAAATTCGAAGAGACTTTTAAGGCCTCAAACTTCTGCTTTATTCATGGCATCTAACAACAATTGCCAACATACAGTAAAATGATTGTACAGTCTGTATAATCAATTCTGTGAAAAGATTATTGCACTTCAGAGGAGAGAGGATCCtccaacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgctcttTGTTGTATCACAATGTGTTGCTTTCATTCTTTAAGGTGAGAATTGGACTGTGTGCCTTTTGTTAACCAAACTTACCAAAAATGAACAAAGTATACAAAAGGGAATCACCAATGAAatgtttttggcaataaatttctgattaaaaatgtt

Function

NR:

description
PREDICTED: retinol dehydrogenase 12-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795565.1 True 2047 mRNA 0.44 7 33412665 33418903

Neighbor

gene id symbol gene type direction distance location
LOC120556151 LOC103374288,LOC102776139,LOC100696842 coding downstream 22354 33362812 ~ 33390311 (-)
LOC120556152 LOC103374289,LOC104951771,LOC103354964 coding downstream 52359 33353861 ~ 33360306 (-)
cry5 LOC103354946,LOC104961892 coding downstream 149732 33254629 ~ 33262933 (-)
alpk3b NA coding downstream 162059 33237294 ~ 33250606 (-)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 181682 33222310 ~ 33230983 (-)
LOC120555331 NA coding upstream 211160 33630063 ~ 33635491 (-)
bcl2l10 bcl2l10,LOC102794833 coding upstream 304958 33723861 ~ 33728257 (-)
gnb5b gnb5,LOC104927313,LOC101156727,LOC108237408,LOC102225297 coding upstream 312231 33731134 ~ 33744672 (-)
myo5aa LOC103358162,LOC107099439 coding upstream 326240 33745143 ~ 33806294 (-)
fam214a fam214a coding upstream 398428 33817331 ~ 33851630 (-)
G31707 NA non-coding downstream 77260 33333954 ~ 33335405 (-)
G31706 NA non-coding downstream 78727 33333098 ~ 33333938 (-)
G31705 NA non-coding downstream 79646 33329613 ~ 33333019 (-)
G31704 NA non-coding downstream 146990 33265318 ~ 33265675 (-)
LOC120556104 NA non-coding downstream 315687 33092815 ~ 33096978 (-)
G31820 NA non-coding upstream 295397 33714300 ~ 33715276 (-)
G31822 NA non-coding upstream 297816 33716719 ~ 33718580 (-)
G31862 NA non-coding upstream 436995 33855898 ~ 33856166 (-)
G31881 NA non-coding upstream 761002 34179905 ~ 34180494 (-)
G31906 NA non-coding upstream 867385 34286288 ~ 34287080 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other downstream 59217 33342247 ~ 33353448 (-)
G31602 ddx28,LOC106597432 other downstream 518260 32891499 ~ 32894405 (-)
cdc42se2 cdc42se2,LOC103398548 other downstream 1295415 32108572 ~ 32117250 (-)
fam120b fam120b,LOC104944276 other downstream 2880523 30515255 ~ 30532142 (-)
LOC120556497 csmd1,LOC102783723 other downstream 3446918 29617320 ~ 29965747 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other upstream 17908 33436811 ~ 33471335 (-)
serf2 NA other upstream 147468 33566371 ~ 33569379 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other upstream 388015 33806918 ~ 33816388 (-)
G31955 NA other upstream 1071757 34490660 ~ 34599541 (-)
cylda cyld other upstream 3440644 36859547 ~ 36882795 (-)

Expression


Co-expression Network