LOC120556176 (LOC103362610,LOC100695157,LOC102311338,LOC102206832)


Basic Information

Item Value
gene id LOC120556176
gene name LOC103362610,LOC100695157,LOC102311338,LOC102206832
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 44533423 ~ 44650930 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795598.1
GTTTTCGGTGCATGGATGGAGTCTTCCCCGCAGGATTCGGCGAGCGACCCAGGCAGCAGTGGCTCTGAGCCCGCTACGCTGCTCACAGAGACGCCGGCGAGACTGGAGACTCTGCGGGGCGGAGAGCACCCGACTCCGGCCAGGAGACACAGCAGCTCCGGCTCCAGCAAAGGTTTGTCAGCAACTGTgaagaagacacacacatctcAGATTGAAATCATTCCCTGTAAGATCTGTGGAGATAAGTCATCAGGGATACACTACGGGGTGATCACCTGCGAGGGCTGTAAGGGTTTCTTCAGGCGGAGTCAGCAGAGTAACGCCGCCTACTCGTGTCCTCGCCAGAAAAACTGTCTGATCGACCGAACGAGCCGCAACCGCTGCCAACACTGCCGTCTGCAAAAATGTCTGGCTTTGGGCATGTCCCGAGACGCTGTGAAGTTTGGTCGCATGTCCAAGAAGCAGCGGGATAGTTTGTACGCTGAGGTGCAGAAACATcgcctccagcagcagcagcagcagcaacagggTCCCCTCCTCCTGTCCCACCCCAGCCTCAGCAGCCCGAGCCCGGGCGAGACGGAGCCGCTGTCCCCTCACTTCGGCCTCACGGAGCTGTCAGAAGAGCTGGGAGGCTACGTGAAACACAACTCACCTGAAGGAGGATCTGTATCGTCCAAGGCGGACTCTGGAGGGGGAGGAGAAGGTCGGGGGTTCTACCTGGATATCCAGCCGTCCCCGGATCAGTCTGGACTCGATATTAATGGCATCAAACCGGAGCCGTTGTGTGACAATGGATCCAATAACGGCTTCTTCCCATACTGCTCCTTCAGCGACGGAGACACTTCACCCACAGTGTCCATGGCTGAACTCGATCATCTGGTTCAGACCATCTCAAAGTCTCACCTGGAGACGTGTCAGTACCTgagggaggagctgcagcagatgAGCTGGCAGAACTTCCCGCAGGACGAGGTGGAGAGCTACCAGAGCAAGCCGCGGGAGGTGATGTGGCAGCTGTGTGCCGTAAAGATCACCGAGGCCATACAGTACGTGGTGGAGTTCGCCAAACGTATCGACGGCTTCATGGATCTCTGTCAAAACGACCAGATCGTTCTGCTGAAAGCCGGCTCTCTGGAGGTCGTCTTGGTCCGAATGTGTCGCCTGTTTGACTCGCAGAACAACAGCGTCTACTTCGACGGGAAGTTCGCAGGTCCGGACGTCTTCAGGGCGCTCGgttGTGATGACTTGATCACATCAGTGTTTGACTTTGCCAGCAGCATGTGTTCGCTGCGTCTGTCGGAGGACGAGCTCGCCGTGTTCTCAGCGTTCCTGCTGCTGTCTGCAGaccgGTCTTGGCTGCAGGAGAAGCTGCAGGtggagaagctgcagcagaAGACTCAGCTGGCTCTGCAGCACGTCCTGCAGAAGAACCAGAGAGAGGATGGAGCGCTGAACAagCTCAGATGTAAGGTGTCAGCGTTGCGCTCCCTGTGCACCCGTCACACGGAGACGCTGTCGGCGTTCCGAGCTGTCTACCCCGACGTGGTGCGGACACACTTCCCCCCGCTCTATAAGGAGCTGTTCGGGGCCGACCTCGAGCTGACGCTGCACAGCGGCGACTAAAACGCCGACTGGTCGTCTTGCAGGATCGGGACGCACCACGGCCACGAacgtcggggggggggggcggtgaCTCACAGCGCGGACGCTGAACAGGACGGAGAGATTTGGATTCCTCAAAGTTTGTCTTTTcttcacctctcctcctcttcctcctctcgcTGGCTCTGGCTTTTCGGACGCAGCGCTGGACTCGGGCGGTCTCCCTTCACGTCTCGTGTCCCGGGAACTTTTTGATCTGGATTCACCTCTGACACACTGAAACCTGCCTCTTGTTTGTCACACCCTTTTCTAACAGTTACTTCACACAGCGTGTTCTCAtcaaccattcgtacatatagctacgaaagACAATCACCGTTATTGGTATGTATTCCtcatgtatttattactgtctaagtctccatccacttgtcaatcgaattatctgaagttcggtaaaaaagctcatgcgaataaagctgagtgtgaaagtgtgtttcca
>XM_039795599.1
GCCGAGGATGACAGAGCTGAGAGAGAGCTGCAGCTGAACACACACGCGCACTGTTACTGCTCTCTGCATGAGTCTGGattataaatatgtattttgtgATTTCTGCCATGAAAGctcAGATTGAAATCATTCCCTGTAAGATCTGTGGAGATAAGTCATCAGGGATACACTACGGGGTGATCACCTGCGAGGGCTGTAAGGGTTTCTTCAGGCGGAGTCAGCAGAGTAACGCCGCCTACTCGTGTCCTCGCCAGAAAAACTGTCTGATCGACCGAACGAGCCGCAACCGCTGCCAACACTGCCGTCTGCAAAAATGTCTGGCTTTGGGCATGTCCCGAGACGCTGTGAAGTTTGGTCGCATGTCCAAGAAGCAGCGGGATAGTTTGTACGCTGAGGTGCAGAAACATcgcctccagcagcagcagcagcagcaacagggTCCCCTCCTCCTGTCCCACCCCAGCCTCAGCAGCCCGAGCCCGGGCGAGACGGAGCCGCTGTCCCCTCACTTCGGCCTCACGGAGCTGTCAGAAGAGCTGGGAGGCTACGTGAAACACAACTCACCTGAAGGAGGATCTGTATCGTCCAAGGCGGACTCTGGAGGGGGAGGAGAAGGTCGGGGGTTCTACCTGGATATCCAGCCGTCCCCGGATCAGTCTGGACTCGATATTAATGGCATCAAACCGGAGCCGTTGTGTGACAATGGATCCAATAACGGCTTCTTCCCATACTGCTCCTTCAGCGACGGAGACACTTCACCCACAGTGTCCATGGCTGAACTCGATCATCTGGTTCAGACCATCTCAAAGTCTCACCTGGAGACGTGTCAGTACCTgagggaggagctgcagcagatgAGCTGGCAGAACTTCCCGCAGGACGAGGTGGAGAGCTACCAGAGCAAGCCGCGGGAGGTGATGTGGCAGCTGTGTGCCGTAAAGATCACCGAGGCCATACAGTACGTGGTGGAGTTCGCCAAACGTATCGACGGCTTCATGGATCTCTGTCAAAACGACCAGATCGTTCTGCTGAAAGCCGGCTCTCTGGAGGTCGTCTTGGTCCGAATGTGTCGCCTGTTTGACTCGCAGAACAACAGCGTCTACTTCGACGGGAAGTTCGCAGGTCCGGACGTCTTCAGGGCGCTCGgttGTGATGACTTGATCACATCAGTGTTTGACTTTGCCAGCAGCATGTGTTCGCTGCGTCTGTCGGAGGACGAGCTCGCCGTGTTCTCAGCGTTCCTGCTGCTGTCTGCAGaccgGTCTTGGCTGCAGGAGAAGCTGCAGGtggagaagctgcagcagaAGACTCAGCTGGCTCTGCAGCACGTCCTGCAGAAGAACCAGAGAGAGGATGGAGCGCTGAACAagCTCAGATGTAAGGTGTCAGCGTTGCGCTCCCTGTGCACCCGTCACACGGAGACGCTGTCGGCGTTCCGAGCTGTCTACCCCGACGTGGTGCGGACACACTTCCCCCCGCTCTATAAGGAGCTGTTCGGGGCCGACCTCGAGCTGACGCTGCACAGCGGCGACTAAAACGCCGACTGGTCGTCTTGCAGGATCGGGACGCACCACGGCCACGAacgtcggggggggggggcggtgaCTCACAGCGCGGACGCTGAACAGGACGGAGAGATTTGGATTCCTCAAAGTTTGTCTTTTcttcacctctcctcctcttcctcctctcgcTGGCTCTGGCTTTTCGGACGCAGCGCTGGACTCGGGCGGTCTCCCTTCACGTCTCGTGTCCCGGGAACTTTTTGATCTGGATTCACCTCTGACACACTGAAACCTGCCTCTTGTTTGTCACACCCTTTTCTAACAGTTACTTCACACAGCGTGTTCTCAtcaaccattcgtacatatagctacgaaagACAATCACCGTTATTGGTATGTATTCCtcatgtatttattactgtctaagtctccatccacttgtcaatcgaattatctgaagttcggtaaaaaagctcatgcgaataaagctgagtgtgaaagtgtgtttcca

Function

NR:

description
PREDICTED: nuclear receptor ROR-alpha-like isoform X2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14033 NR1F4; nuclear receptor subfamily 1 group F member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795598.1 True 2107 mRNA 0.56 12 44533423 44650930
XM_039795599.1 False 2016 mRNA 0.55 11 44533423 44571355

Neighbor

gene id symbol gene type direction distance location
LOC120556335 NA coding downstream 56156 44446183 ~ 44477267 (-)
LOC120556524 NA coding downstream 478572 44053173 ~ 44054851 (-)
trnav-uac NA coding downstream 596375 43936976 ~ 43937048 (-)
si:ch211-71n6.4 LOC100691126,LOC102786012,LOC102297160,LOC102213240,LOC101463620 coding downstream 684524 43817732 ~ 43848899 (-)
LOC120556093 NA coding downstream 777250 43709700 ~ 43756173 (-)
LOC120556004 NA coding upstream 28124 44679054 ~ 44683721 (-)
il17a/f1 NA coding upstream 90244 44741174 ~ 44743918 (-)
gtf2a2 gtf2a2 coding upstream 165782 44816712 ~ 44826908 (-)
LOC120556528 NA coding upstream 300376 44951306 ~ 44959853 (-)
LOC120556292 anxa2,LOC103361870,LOC106530007 coding upstream 415852 45066782 ~ 45089495 (-)
G34149 NA non-coding downstream 41051 44492140 ~ 44492372 (-)
G34148 NA non-coding downstream 41325 44491571 ~ 44492098 (-)
G34146 NA non-coding downstream 49586 44483572 ~ 44483837 (-)
G34120 NA non-coding downstream 123536 44409643 ~ 44409887 (-)
G34107 NA non-coding downstream 273861 44259359 ~ 44259562 (-)
G34183 NA non-coding upstream 38979 44689909 ~ 44690861 (-)
G34250 NA non-coding upstream 79847 44730777 ~ 44825727 (-)
G34255 NA non-coding upstream 87550 44738480 ~ 44740122 (-)
G34260 NA non-coding upstream 121925 44772855 ~ 44773317 (-)
G34270 NA non-coding upstream 232815 44883745 ~ 44924390 (-)
G34078 NA other downstream 443732 44040360 ~ 44089691 (-)
LOC120556522 LOC103374105,LOC102297981 other downstream 720198 43766691 ~ 43813225 (-)
G33914 NA other downstream 1076576 43452712 ~ 43456847 (-)
G33847 NA other downstream 1318436 43214634 ~ 43214987 (-)
G33796 NA other downstream 1542653 42985223 ~ 42990770 (-)
LOC120556527 LOC102787635,LOC101476187,LOC100691227,LOC106610718 other upstream 141052 44791982 ~ 44915666 (-)
G34518 NA other upstream 487726 45138656 ~ 45271013 (-)
G34551 NA other upstream 636875 45287805 ~ 45294207 (-)
G34617 NA other upstream 931567 45582497 ~ 45583667 (-)
G34584 LOC108242767,LOC105923784,LOC108242778 other upstream 1108558 45759488 ~ 45769788 (-)

Expression


Co-expression Network