LOC120556181 (pepd,LOC106587563,LOC106562343)


Basic Information

Item Value
gene id LOC120556181
gene name pepd,LOC106587563,LOC106562343
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 37736590 ~ 37737366 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795608.1
TGTCTCCCTGTCCTTTTCAGACCTGTCTACTGGCTGGGTAAAGACACCCTGAGGGTGTCTGCTGCTCTGTTTGCAGAGAACCGTCGACGGCTGTGCAATGCGCTGAAAGCCAAAGACGGAATGGTGCCGCAGTCAGTGGTTGTGCTGCAGGGAGGAGAGCAGAAGCAGAGGTactgcacagacacagacgtccTTTTCAGACAGGAGTCTTTCTTCCACTGGGCTTTTGGAGTAACTGAGCCTGACTGTTACGGCGCCATTGATGTGGACTCTGGGAAATCCATCCTTTTTGTTCCAAACTGCCTGAAAGCTATGCTACTTGGATGGGAGAGTGAGTCACACTAATCTTCAAAGAGCGGT

Function

symbol description
pepd Predicted to enable manganese ion binding activity and metalloaminopeptidase activity. Acts upstream of or within endocrine pancreas development and pancreas regeneration. Is expressed in blood vessel; eye; neural crest; optic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in prolidase deficiency. Orthologous to human PEPD (peptidase D).

NR:

description
PREDICTED: xaa-Pro dipeptidase-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795608.1 True 360 mRNA 0.52 2 37736590 37737366

Neighbor

gene id symbol gene type direction distance location
LOC120556507 LOC106562343,LOC106587563 coding downstream 3422 37728955 ~ 37733168 (-)
LOC120556420 LOC104947065 coding downstream 152038 37410624 ~ 37584552 (-)
LOC120556282 kctd15,LOC107099506 coding downstream 347770 37358610 ~ 37388820 (-)
lsm14ab lsm14a coding downstream 470237 37254590 ~ 37266353 (-)
gpib gpi coding downstream 524192 37203001 ~ 37212398 (-)
LOC120555298 thsd4 coding upstream 5468 37742834 ~ 37784208 (-)
tm2d3 tm2d3,LOC104920749 coding upstream 106302 37843668 ~ 37852217 (-)
tars3 tarsl2,LOC103354323 coding upstream 115624 37852990 ~ 37867376 (-)
LOC120555499 LOC103354321 coding upstream 150858 37888224 ~ 37891688 (-)
cplx3b cplx3 coding upstream 156210 37893576 ~ 37899489 (-)
G32469 NA non-coding downstream 35062 37701241 ~ 37701528 (-)
LOC120555521 NA non-coding downstream 91289 37641643 ~ 37645301 (-)
G32463 NA non-coding downstream 128177 37607641 ~ 37608413 (-)
G32434 kiaa0355 non-coding downstream 454568 37244095 ~ 37282022 (-)
G32404 NA non-coding downstream 547866 37186079 ~ 37188724 (-)
G32484 NA non-coding upstream 4248 37741614 ~ 37742768 (-)
G32539 NA non-coding upstream 104869 37842235 ~ 37843557 (-)
G32556 NA non-coding upstream 248002 37985368 ~ 37985774 (-)
G32568 NA non-coding upstream 249737 37987103 ~ 37988188 (-)
G32684 NA non-coding upstream 631717 38369083 ~ 38371072 (-)
ss18l2 ss18l2 other downstream 483164 37231141 ~ 37253426 (-)
nod2 nod2 other downstream 845286 36883651 ~ 36891304 (-)
cylda cyld other downstream 853795 36859547 ~ 36882795 (-)
G31955 NA other downstream 3137049 34490660 ~ 34599541 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other downstream 3920202 33806918 ~ 33816388 (-)
LOC120556344 lrrc49,LOC102795887 other upstream 51359 37788725 ~ 37827271 (-)
slc6a5 slc6a5 other upstream 1467909 39205275 ~ 39235746 (-)
LOC120556511 LOC102208128,LOC101468289 other upstream 2312258 40049624 ~ 40142048 (-)
LOC120556146 NA other upstream 2826875 40564241 ~ 40589664 (-)
G33122 NA other upstream 2911310 40648676 ~ 40662621 (-)

Expression


Co-expression Network