lrrc28 (lrrc28)


Basic Information

Item Value
gene id lrrc28
gene name lrrc28
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 160255 ~ 167515 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795615.1
tcccacctctgattcccacaggaagttacgTTAATGGTGACGGCTGTGTGACGGGCCAGTGACGTGTTACGTTGTTTACGACACAGCACTGTTGCTGTTCAACAACCAACAATATTACTTAGCATTAGCTTATGTGCTTTCACTGACATCCATTCAGCATTAGGCGGCTCATGTGCACATGTGGGAAATAAAGTAGAACAGAATGGTCCTGCACGATTAAGGAAACAGTGATGCCATAAAGAAAGGAGGCACTGCCGAGTCTCTTCCACCGGGGAGGAAATGGCAACTGAACTCCACGAGACTATTTCCATGGCCAAACAGGAGCGTCACAAAAATCTCTTTCTTAACTACAGAAACCTGAATAAGTTCCCAGTAGAGCTGCTGAAGGACGAAGGCCTGCAGTTTCTGGAGAGACTGTACATGAAGAGGAACTCGCTCACAACACTGcctgaCAATCTTGCTCAAAAGCTCCCAAATTTAATTGAACTgtATTTGCACTCAAACAACATAGTCATTATTCCTGAAGCTATTGGAAACCTGGCCAGACTGCAGTCACTGGACCTGAGTAATAACGCCCTCCAGTTCCTCTGTCCAGAGATTGGCAGACTAAAGTCTCTACGACACCTGAGGCTGTCCAATAATCAGCTGAAATGCCTTCCTCCAGAGATCGGTgatctgcaggacctggagacTCTGGATGTGTCCAGGAACCAGCTGGTATCTCTACCAGATCGCCTGCACCGCTGTACTTCTCTGCAGAATCTGACAGCTGACCACAACTTGTTGAGCCACGTTCCCCGGCAGCTCTGCTGGCTCCACCGCCTCAACCAGCTCTCCATGGCTGCTAACCGGCTGACCTTTCTACCGCTCGatctGGGCAGATCACGAGAGCTGCAGTTTGTGTTCGTGGACAACAATGTGGACCTGAAAGGCCTTCCCTCCTACTTGTATAACAAAGTCATCGGCTGCAGCGGgtgCGGTGTGTCAGCCCAGGTGTTCGTGGGTGAGGCGCTGGGTGAGGCGCTGGGTGAGGCGCTGGGTGATGCGCTGGGTGAGGCGCTGGTCGGGCTTCCAGCTGAAGTGAAGGTGCTGGGTTCAGAGACGGATAACGTGGTTCCCCTCGAGGAGATCGCCATGAGAACCCTGCATTGCATCTACCAGCAACGCCCAACCAACCTGAACTTGCTGCCTCCCATTACCCTCCCGAAGAGCCTGCTGGACCTGCTGCAGTTCCCCTTGGGACACTGCCACCGCTGCAGTCAAACCATGTTCACCATCATCTACCCAAAACTCTTTCCCCTCCGTGACACCGCGCTGGCAGGAGTGCACCGCAGGACGACTGTGAGTTTTGTGGCCTATTGCTGCTCTAGCCGCTGCCTCCGGACCTTTGATCTCCAAggatgatgtcatttccttcaTCCTGTACACATTCACTCAGGAGCTGTTTAGTGGTTTCCTGAAGGTGGCAGATGATAGCTTGTAATTTGTGTGGATCTTGAGGGTCTGTGAGCTCTGTGCTTGATTGACAATGCTAAGAACCATAGAGAAGCAGGCTGTGTGGATGTGTGGTGGGTCAGATGATGGACACACATGGTAAGCAACATTTTAACATACTTGTCAAAGACTCAAACCTACATGATGTTCCTGAATCCAACCAACTGGGAGGGTTTTattcctgtgtttgtgttgggggTCAAAATAATAACTAACACTATAAGACGTGAAGTATTATACTATTCACAACTGGGCACTTTTTAAGAACAAGCACGGTTTGATTTTTGTGAAATCAGCAATTTTTCACACATAAGTGTATTGCAGCAGACATCCCATTGATTGTGGAGTCATATTTGAAGTATTAACATTTGTAGTACAGTTTGTTTGACTGATTACTGAAGAAAATTTGAAGGGTTATAATTTACTAAAGAATGTGCATCTATTTGATATGTGTCATTTTCTGCAGCAAGTACAGTGACCTGTTAGAGACTTATTATGGAGTTGTGTATAAAATCTAGGTACAGTCAGTAAAATGAGCCAAATATTAATCTCacatatttgttaaaaaggtatTAGAATTTTGACAGTTTGCAATGTCAGTCATATTGGACAGGTATCCATTTTGAAAATTGGACTGATTTTAGAACAGAAGTTAATACGTTTACGTATATTTACATGTTAAAAActaatgtttttgtctttacaTAAACTTAAATGCATCTAAACTTACATGCACCCAAAATACCCAAATTGTTGCAACAGGTTTAAAGTCTGCAGGCCCATTCAGTTTGGGGTCAAATATTTGTGTCATCATTTTTAGGAAATAAGGTTACTTTGAACACTTCAGAGGCACAGTGTCATTATCCTGTTGAACTGATGCGTGTTTGTTAATGTTCATTACTATGTTGTACAATTCTAATTCAtcatttgttttgaatgtgtttGGAAGTAAATCTTGACTGATTTCAACAAC
>XM_039795617.1
CATTTGCTTTCTATCAGGAAACAGTGATGCCATAAAGAAAGGAGGCACTGCCGAGTCTCTTCCACCGGGGAGGAAATGGCAACTGAACTCCACGAGACTATTTCCATGGCCAAACAGGAGCGTCACAAAAATCTCTTTCTTAACTACAGAAACCTGAATAAGTTCCCAGTAGAGCTGCTGAAGGACGAAGGCCTGCAGTTTCTGGAGAGACTGTACATGAAGAGGAACTCGCTCACAACACTGcctgaCAATCTTGCTCAAAAGCTCCCAAATTTAATTGAACTgtATTTGCACTCAAACAACATAGTCATTATTCCTGAAGCTATTGGAAACCTGGCCAGACTGCAGTCACTGGACCTGAGTAATAACGCCCTCCAGTTCCTCTGTCCAGAGATTGGCAGACTAAAGTCTCTACGACACCTGAGGCTGTCCAATAATCAGCTGAAATGCCTTCCTCCAGAGATCGGTgatctgcaggacctggagacTCTGGATGTGTCCAGGAACCAGCTGGTATCTCTACCAGATCGCCTGCACCGCTGTACTTCTCTGCAGAATCTGACAGCTGACCACAACTTGTTGAGCCACGTTCCCCGGCAGCTCTGCTGGCTCCACCGCCTCAACCAGCTCTCCATGGCTGCTAACCGGCTGACCTTTCTACCGCTCGatctGGGCAGATCACGAGAGCTGCAGTTTGTGTTCGTGGACAACAATGTGGACCTGAAAGGCCTTCCCTCCTACTTGTATAACAAAGTCATCGGCTGCAGCGGgtgCGGTGTGTCAGCCCAGGTGTTCGTGGGTGAGGCGCTGGGTGAGGCGCTGGGTGAGGCGCTGGGTGATGCGCTGGGTGAGGCGCTGGTCGGGCTTCCAGCTGAAGTGAAGGTGCTGGGTTCAGAGACGGATAACGTGGTTCCCCTCGAGGAGATCGCCATGAGAACCCTGCATTGCATCTACCAGCAACGCCCAACCAACCTGAACTTGCTGCCTCCCATTACCCTCCCGAAGAGCCTGCTGGACCTGCTGCAGTTCCCCTTGGGACACTGCCACCGCTGCAGTCAAACCATGTTCACCATCATCTACCCAAAACTCTTTCCCCTCCGTGACACCGCGCTGGCAGGAGTGCACCGCAGGACGACTGTGAGTTTTGTGGCCTATTGCTGCTCTAGCCGCTGCCTCCGGACCTTTGATCTCCAAggatgatgtcatttccttcaTCCTGTACACATTCACTCAGGAGCTGTTTAGTGGTTTCCTGAAGGTGGCAGATGATAGCTTGTAATTTGTGTGGATCTTGAGGGTCTGTGAGCTCTGTGCTTGATTGACAATGCTAAGAACCATAGAGAAGCAGGCTGTGTGGATGTGTGGTGGGTCAGATGATGGACACACATGGTAAGCAACATTTTAACATACTTGTCAAAGACTCAAACCTACATGATGTTCCTGAATCCAACCAACTGGGAGGGTTTTattcctgtgtttgtgttgggggTCAAAATAATAACTAACACTATAAGACGTGAAGTATTATACTATTCACAACTGGGCACTTTTTAAGAACAAGCACGGTTTGATTTTTGTGAAATCAGCAATTTTTCACACATAAGTGTATTGCAGCAGACATCCCATTGATTGTGGAGTCATATTTGAAGTATTAACATTTGTAGTACAGTTTGTTTGACTGATTACTGAAGAAAATTTGAAGGGTTATAATTTACTAAAGAATGTGCATCTATTTGATATGTGTCATTTTCTGCAGCAAGTACAGTGACCTGTTAGAGACTTATTATGGAGTTGTGTATAAAATCTAGGTACAGTCAGTAAAATGAGCCAAATATTAATCTCacatatttgttaaaaaggtatTAGAATTTTGACAGTTTGCAATGTCAGTCATATTGGACAGGTATCCATTTTGAAAATTGGACTGATTTTAGAACAGAAGTTAATACGTTTACGTATATTTACATGTTAAAAActaatgtttttgtctttacaTAAACTTAAATGCATCTAAACTTACATGCACCCAAAATACCCAAATTGTTGCAACAGGTTTAAAGTCTGCAGGCCCATTCAGTTTGGGGTCAAATATTTGTGTCATCATTTTTAGGAAATAAGGTTACTTTGAACACTTCAGAGGCACAGTGTCATTATCCTGTTGAACTGATGCGTGTTTGTTAATGTTCATTACTATGTTGTACAATTCTAATTCAtcatttgttttgaatgtgtttGGAAGTAAATCTTGACTGATTTCAACAAC

Function

symbol description
lrrc28 Orthologous to human LRRC28 (leucine rich repeat containing 28).

NR:

description
leucine-rich repeat-containing protein 28

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795615.1 True 2467 mRNA 0.45 10 160255 167515
XM_039795617.1 False 2263 mRNA 0.45 9 160255 166105

Neighbor

gene id symbol gene type direction distance location
LOC120555880 LOC104920738,LOC101079833,LOC103149866,LOC103379309,LOC103462608,LOC100696143,LOC107382039,LOC101468238 coding downstream 6864 100108 ~ 153391 (-)
igf1rb LOC103359504,LOC104920736 coding upstream 5782 173297 ~ 233594 (-)
mespaa LOC101162828 coding upstream 121746 289261 ~ 290375 (-)
mespba LOC103359507 coding upstream 126169 293684 ~ 296287 (-)
sv2ba LOC103359500,LOC101162590,LOC101062552 coding upstream 134403 301918 ~ 326728 (-)
mrpl46 mrpl46 coding upstream 854448 1021963 ~ 1030055 (-)
G24782 NA non-coding downstream 65603 93035 ~ 94652 (-)
LOC120555933 NA non-coding downstream 73555 85698 ~ 86700 (-)
G24785 NA non-coding upstream 11795 179310 ~ 180210 (-)
G24818 NA non-coding upstream 162263 329778 ~ 330358 (-)
G24819 NA non-coding upstream 162880 330395 ~ 333131 (-)
G24833 NA non-coding upstream 260187 427702 ~ 470734 (-)
G24862 NA non-coding upstream 418517 586032 ~ 586344 (-)
ntrk3b NA other upstream 538642 706157 ~ 921549 (-)
pnoca NA other upstream 893589 1061104 ~ 1105167 (-)
LOC120555898 mctp2 other upstream 1243159 1410674 ~ 1457108 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other upstream 1342650 1510165 ~ 1555646 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other upstream 1420029 1587544 ~ 1642348 (-)

Expression


Co-expression Network