ubap1lb (ubap1l,LOC107685210,LOC106932412,LOC103156499,LOC105938593)


Basic Information

Item Value
gene id ubap1lb
gene name ubap1l,LOC107685210,LOC106932412,LOC103156499,LOC105938593
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13208329 ~ 13238252 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795644.1
GGTCCATCACATTCTGTTTTTTATAGAGCACATGCCTCCGTGTGGCCGGTGGGGCTTAACTTTCTTGTGAAGACTTTGCACACTATTTCCGTGTTTGACTCCAGCCAGCCTTACATCACTTCCTGTATTCAGCCGTGGGACCTTCTGCTCTCTTTGTTGACTTCCTGTGTGGATCACCTGATGCAGGTTACTGGGAGTCAGTAGATTACTGGCTCTCTAATCTGAACTGCAGTCAGTCTGAGCTCCCCACACCGCTGAGAGGAAACTAACGCTCTGACGGCAACAacaacactacactacacaggatGGACGGTGTCCCTCTGAAGATGCCACAGAGTGTTTCACAGGAAGTCAAAGAAGACGTTGAAGTTATTGTCCCCGATTATCTGAGCACACTGCAGGATACAGAGTATGACTTCCATCTGGAGAACTGGGTACTAACTGGGCTGCAGAGCGGCTTCATCAGCCAGCATCGGCCGCAGCTCTCCTCATCAGGACTGCAACCATCTTGTCCGCCATACTGGATGATGTTCAGCAGCCCGCAGCAGAGCCGCCTGGCCAGCCGCCACTGTTCCGACTACTGGGAGCCCAATCCTCGCCAGCGCTCCCACAGCCTCAACCCCGCCGTACTGCGCACTAAGCTGGCCATCTCAGACTCGGAAGATGATGGAGAGAGCGCTGCAGAGAAAGCCACGATCCGTTTGTCAGTGAAAGGCGGTTCTGGTGGGGAGCGTCCTGCTGCTTTATGTCAACATGCTCAGAGGAGAGCACAGAGAGCCTTCGTCCCAGACCTGCTGCACCCCCCGGCCTGCCTCAGCAGCCTGCCACACCAGCGCAGGAAGAACCTACGACAGGGCTCCCTGTCAGGGCTGGACACGTCCCGACAACATGATCCCAACACAGACAGCCAATCCAAGAGCCCGACCTCACGCAGGACCACCACTACCAGAGCCAATACCGTCGATGGGCTGCCCAGCACCCACAGCCACGCCACAGCACGCACGCCTCTGGGCCCAGACTGCTGTAGTACCCCCCCTGCAGGCCTCCGCCCCCTGGGTCTCCGCTCCCATGGTTCCGACTCGTCAGCAGAGCTGCTGTCAGCTCTGAGCCCCGAGGAGAGAGAGCTGCTGGGGGCCATTACTGCCCGGGGTTACCCCCTCCGTACTGCCATCATCGCCCTGCAGAGGGCAGGCCAGAGCCAGGACCAGgtcTTGAGCTACCTGGTGGCATGTGACCATCTCTGTCAGCTGGGTTATGACATGGCTCTGGTAGAAGAGGCTCTGGAGATGTTTCAAAACTGTGAAACAAAGGCAAAGGAGTTCCTTCATCTGCTGAGTCAGTTCAATGAGATGGGCTTCCAGCAGAACGCCATCAAAGAAGTGCTGCTGGTGCATGAAAACCACAGAGAGCGTGCACTGGAGGAGCTGATGATGCGTGTGGCGtgatcagcacacacacacacgcacgcacacacacagaactaaCGTGTTATTTACTATAGGAGAATATGAACAGCCCATTGAtaaggcacagagagagagtaaacacattaatattATTAGAGCTGGAGATGGACGTGGCCTTCACTCAGGGAAAGTATTTTGTtgatatattacattatatggatgatgatgatgatgatgatgtgccATAGTGCACAGTTTGGTTCCTCTTTGATAACAATGTCTGAAAGTGGCTGAACTTGTGTGATCTGTGTATCTGAGTAGTTGTAATTGTGACAGATTTATTAAACAAGTGTCATGAAAATCCA

Function

symbol description
ubap1l Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT I complex.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795644.1 True 1771 mRNA 0.53 7 13208329 13238252

Neighbor

gene id symbol gene type direction distance location
rasl12 NA coding downstream 9693 13188414 ~ 13198636 (-)
vstm2b vstm2b coding downstream 715158 12489220 ~ 12493171 (-)
LOC120555959 NA coding downstream 1029658 12157744 ~ 12178671 (-)
ccnd1 ccnd1 coding downstream 1221402 11980178 ~ 11986927 (-)
fgf3 fgf3 coding downstream 1411110 11794280 ~ 11797219 (-)
pdcd7 NA coding upstream 2434 13240686 ~ 13248416 (-)
LOC120555522 NA coding upstream 46989 13285241 ~ 13294261 (-)
LOC120556590 NA coding upstream 50958 13289210 ~ 13289264 (-)
chst1 chst1 coding upstream 164072 13402324 ~ 13406615 (-)
LOC120555520 NA coding upstream 485341 13723593 ~ 13727470 (-)
G27108 NA non-coding downstream 36899 13170457 ~ 13171430 (-)
G27063 NA non-coding downstream 184244 13023855 ~ 13024085 (-)
G27062 NA non-coding downstream 184704 13023199 ~ 13023625 (-)
LOC120556265 LOC108249937,LOC106912228 non-coding downstream 221911 12984309 ~ 12986418 (-)
G27026 NA non-coding downstream 317036 12885852 ~ 12891293 (-)
G27133 NA non-coding upstream 10492 13248744 ~ 13249163 (-)
G27135 NA non-coding upstream 11652 13249904 ~ 13250140 (-)
LOC120555270 NA non-coding upstream 140778 13379030 ~ 13391141 (-)
G27178 NA non-coding upstream 160751 13399003 ~ 13399374 (-)
G27189 NA non-coding upstream 382311 13620563 ~ 13620851 (-)
G27075 LOC104939823,LOC100707594 other downstream 112563 13069996 ~ 13095766 (-)
G26924 LOC108281047 other downstream 903505 12304539 ~ 12304824 (-)
G26891 NA other downstream 1246557 11960701 ~ 11961772 (-)
LOC120555651 NA other downstream 1539060 11643231 ~ 11669269 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other downstream 1698029 11476506 ~ 11510300 (-)
G27321 NA other upstream 1231506 14469758 ~ 14470345 (-)
LOC120556476 NA other upstream 1339775 14578027 ~ 14580011 (-)
G27420 NA other upstream 1604461 14842713 ~ 14843905 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other upstream 1812410 15050662 ~ 15078830 (-)
LOC120556162 znf609 other upstream 2833317 16071569 ~ 16159882 (-)

Expression


Co-expression Network