ccnd1 (ccnd1)


Basic Information

Item Value
gene id ccnd1
gene name ccnd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11980178 ~ 11986927 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795659.1
ATGGGGGACCAGCTGCTGTGCTGCGAGGTGGACTCCATCCGGAGAGCCTACCAGGACGTCAACCTGCTCAACGACCGAGTTCTGCACACCATGCTGAAGGCAGAGGAAATCTACCTACCATCGCCAAACTACTTTAAGTGTGTTCAGAAAGAAATTGTACCCAAAATGAGGAAAATAGTTGCCACCTGGATGTTAGAGGTCTGCGAGGAACAGAAATGTGAGGAGGAGGTTTTTCCACTTGCTATGAACTATTTGGACAGATTTTTATCAGTGGAGGCCACCAGAAAAACAAGACTCCAGCTGCTGGGAGCTACATGCATGTTTCTAGCATCCAAGATGAAGGAAACTGTGCCCTTAACGGCGGAGAAACTCTGTATCTACACGGACAACTCTGTCCAACCCGGAGAGCTACTGCAAATGGAGCTGCTGGTTCTCAACAAGCTGAAATGGGATCTGGCTTCAGTCACTCCGCACGACTTCATCGAGCACTTCCTGTCCAAGCTGAAGATCTACCCGTCCACCAAGCAGATCCTCAGGAAACACGCGCAAACCTTCGTGGCTCTCTGTGCTACAGATGTCAACTTCATCGCCAGTCCTCCGTCCATGGTGGCGGCGGGCAGCGTGGTGGCGGCCGTCCAAGGTCTCTATCTGAAGAGCCAGGACGCCTCGCTGTCCTCCCAGAACCTCACCAACTTCCTGTCGCAGGTCATTCGCAGTGACCCGGACTGCCTGCGGTCGTGCCAGGAGCAGATTGAGTCCCTGCTGGAGTCCAGCCTGCGGCAGGCGCAGCAGCACGGCAACACCACAGAGAGCAAACACGTGGACGAGGACGTGGACCTGTCCTGCACACCCACAGATGTCCGGGACATCAACATCTGAAACTGGTGCCAGCCGCGCCGCACGATAACCTGATGGTGGAGGGAACGTTGTCGACAGAGGGTGGTGATGGGCGGGCTGGGGAGGGGGGGTTCCTCATCTGAACTCAGggctcccctcctcctccttcatccTGGTGGGCTGCTATCATGGCCGACATGTCACTCACATGCCCGCTGTCCGCTCCGGCTGCCAAGACGGGACAGAGCTCCCACACCCCGCAACGAAGCCCAAGTGACATTTCCTGCCAGTGTCCCCTCCCATCCTGGGAAAAGAAATGAACACTACAGAAATGTACAAGAGAGAAAAGACACCAGATACTGATGATCTGCGTGGGCTGGAGTTGAAGCCACAAAACAGACATTATTTTATAATTCCCTCAAATATTAAACTAGGAATCTTTAAATTACCGCGGACTCAGCTGGCCTACTAAAACATCCCGAAGTGTCATGTACAGTAGGTCCCTGTAGTCTGTGTTCAGGTCTTCATCTGAAATCTGACTTTTGTTAGAGAAGAGgctattttgttttcatttctctATTGTTATATCTAATGTTTTAGACTTTCTGTCCAAGCTCCCATGTTTGTCTCGTTGCAGTGCAAACATTCATATATCCCTGCTTGCTTATGTTTAGTCACTTTATCATATATAATTTTAGACCTCTTATCAATTAGTCTTATACCTCTTTTCTtccaagcttttttttttttttacgaagtGAGATACTCTGTTGTTATGACCCTAGTGACTATGGACTGTTGATGTTAAGGCTTgggcatacagtatgtgattCTTTGTCCATTTCAGCTTGCTGTTATTTGATAAGATCAAATCATTGCACGACCAAGCAGAGCAATCGGCAGTCTGTTATGTATCCTTTCTCTGTGTAGTTATACCTAAACCATTCCAACTTtgtttaaagagaaaaaaaaaatagcacttTTGGTCAGCACTGCTGGTcgtcttaaaaaagaaaaaaaaaatcgcagTGATTTAATTGAACCGGGGCTGAGCAGGAGTGTTTTGGTGATGGAGAGTCGGAGCGACACCTGCAGACAGTTGGATCTGGATCGGATTCCTCTAATGGGACAAAAGAATAGACCATTATGGCAGAAATACTTTTTCAAAACACGACTGAATGCTGCTTGAAACTGTCATGAGTCTCACAGAGCCAATGGCTTTCTGTAGCTGCCTTCTAAGTCTCAGATTTGAGTTTTAGTTCAACAGATGTTTCATACAGACAAAACTGCTCTTCCATTCAAAGACCTATTGTTTCAGTGTGCTGAGCTAGAAAATAAGTATTATTTTTAGAGTTAaaataatactttatttttaatatagtaaaacatattatttattcttttttatttttatttttttttagcttgcaTTTTCTATTTTGCGAATTAACCCATGGCTCCACCTGCTGTTGAATCTATTTCTGCCTGCAGAGCAGCGCTGTCGTCCAGAAATATCTGTAAAAACTAAAACTCCACTCCTTTCTCGAAATTGCCAGGACAGCATCTCCTCTGTCGTCGCGCCTCAGTTCAAACACTGCTCATGGATTCTGGGAAGGGGGATGAAGCTAAAAGAAATGTGTTGAGACTATGATTTTGCACAGACCTAAAAGACATGGGCTGCGTTTCTTGGGGACTTGCCGGAAAAAAAATTATGGAGAGCAAAGCCGGCAAGCGTACCAAGGGATGAACAAGCAGCAACAGTGGCAAAAAAAAGGGTAAAGGCTTAACAGGGAGGGGTGTCTTAACGCTGTAGAATATAAGTCACGGTTCCTACACAGGAGGGCAGACTTGTCATGACCAGGTTGATGTACGCTTTATATATGACGAAGGACAGATTAGTACGAAAAGGAGACGTctctccaaatcaaattctggGAAAAGTATTGATTTCTGACTATGTCAACTGTGTAGGAAACCTGTACGTTAGGTTTCTGATTGTACATTAATGATAGAGAGTAGGAGAGAAACACTCCTTGTATTCCGCTGCTATAGTAAATGAATCCCAGCTACgtgttttaaaaacaaaacaaaagcaaaacagaTGACAAAAACGTAATGGATTAAAAATGATGCTTTTCTCCTGTTGTTTGCTGCTacatttttggtgtttttttttatacatataaaTGTCAATATACTGCCATTATAGGTTTGAATTTTCTCATAGAAAATTGTTTTATTGACATCCTTGTTGTTTTTATGTAGATTCTATgtgatctgttttttttttttttttgtaattacgtAACATGATTTTCTGAACTATTCCAAAAAAAACCACAAGGAAGAATGAGACAATGTATAGAAATGCTTTGATCCACAATACCTCATGTGACAGTCAAGATCTATCTCAAATTTGtaggctttttatttgtttagttCTTATTATATTGTACTTGTTGGTTCAGTGCCTACTAGCTCTGATCAACCTGCTTAAGATAAAGCATCCGCAATGGAAACTAGCGAGTCCAGGGCATGCTTTGATACTGGTGCCATAACAGAAAGTGGGATATGTATAACTCTGTTGAGTGTTAAGCTGTCTCAGTGAAAGAGACTTTATCCCCCCCTTTAGGCCCATAGTGGCCTTTTTTCCTTTCccctttttatatttataaaaggaaaaaaagctttttgCTCCCATTTTCAAACTGTCAGTGAGTTGATTTGAGTTTGTAAATAGATCAGTGTCGTGCTCGGTAAGCCATAGACTGTTTTTTTGTTACAGATCATTCCACACAGTTGTGTCTACTTCATGCCAATTGTCTGCAACTTGTCGTCtacacaataaaaacatgaattagATGGAG

Function

symbol description
ccnd1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity and transcription corepressor activity. Acts upstream of or within camera-type eye morphogenesis; neuron cellular homeostasis; and regulation of neural retina development. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex and transcription repressor complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; hematopoietic system; immature eye; nervous system; and neural tube. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); colorectal cancer; hematologic cancer (multiple); invasive lobular carcinoma; and von Hippel-Lindau disease. Orthologous to human CCND1 (cyclin D1).

NR:

description
G1/S-specific cyclin-D1

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K04503 CCND1; G1/S-specific cyclin-D1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795659.1 True 3704 mRNA 0.43 5 11980178 11986927

Neighbor

gene id symbol gene type direction distance location
fgf3 fgf3 coding downstream 182959 11794280 ~ 11797219 (-)
fgf4 fgf4,LOC104954779 coding downstream 195741 11780768 ~ 11784437 (-)
fgf19 fgf19 coding downstream 239258 11733441 ~ 11740920 (-)
vps35 vps35 coding downstream 344045 11607040 ~ 11636133 (-)
c3h16orf87 LOC104939617,LOC103369653,LOC101078579,LOC101483362,LOC100690510 coding downstream 380556 11574033 ~ 11599622 (-)
LOC120555959 NA coding upstream 170817 12157744 ~ 12178671 (-)
vstm2b vstm2b coding upstream 502293 12489220 ~ 12493171 (-)
rasl12 NA coding upstream 1201487 13188414 ~ 13198636 (-)
ubap1lb ubap1l,LOC107685210,LOC106932412,LOC103156499,LOC105938593 coding upstream 1221402 13208329 ~ 13238252 (-)
pdcd7 NA coding upstream 1253759 13240686 ~ 13248416 (-)
G26864 NA non-coding downstream 209309 11770373 ~ 11770869 (-)
G26857 NA non-coding downstream 263470 11716405 ~ 11716708 (-)
G26831 NA non-coding downstream 408001 11571813 ~ 11572177 (-)
G26806 NA non-coding downstream 413553 11566262 ~ 11566625 (-)
G26805 NA non-coding downstream 414798 11564684 ~ 11565380 (-)
G26912 NA non-coding upstream 218148 12205075 ~ 12205324 (-)
LOC120556136 NA non-coding upstream 280216 12267143 ~ 12267920 (-)
G26921 NA non-coding upstream 292222 12279149 ~ 12279413 (-)
G26923 NA non-coding upstream 296455 12283382 ~ 12283632 (-)
G26925 NA non-coding upstream 319732 12306659 ~ 12306880 (-)
G26891 NA other downstream 18406 11960701 ~ 11961772 (-)
LOC120555651 NA other downstream 310909 11643231 ~ 11669269 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other downstream 469878 11476506 ~ 11510300 (-)
G26298 NA other downstream 2683432 9295068 ~ 9296746 (-)
LOC120555589 cemip other downstream 3001034 8759601 ~ 8979144 (-)
G26924 LOC108281047 other upstream 317612 12304539 ~ 12304824 (-)
G27075 LOC104939823,LOC100707594 other upstream 1083069 13069996 ~ 13095766 (-)
G27321 NA other upstream 2482831 14469758 ~ 14470345 (-)
LOC120556476 NA other upstream 2591100 14578027 ~ 14580011 (-)
G27420 NA other upstream 2855786 14842713 ~ 14843905 (-)

Expression


Co-expression Network