XLOC_005077 (si:dkey-202c14.3)


Basic Information

Item Value
gene id XLOC_005077
gene name si:dkey-202c14.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 2951186 ~ 2993095 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009875
CCGACTTTCTGTCAGGTTAACAAAGCAACAACGgtAGGCTATGGACAATCAGAAACGACATAAGGACCTATGGAAGGTCTATAAGGAGGAAAAACCTAGCAGTACTTATCATTTTGCTGGCCGGAGTGTTCGTCTGTTGGAGTCTCTGCAGTCGAATCATCTGAGCCTCTTTATGGAGTCCTTCTTCAGGCAAAGATCTGATCCCAGCAGAAGAGTCCGAGCGTCTGAGCGAGTCTCAGCTAACTCCATGAGCTTTGAGGATTACTTTTGCTGTCTGAAAGAAGCGACAGGCCAAGACTACCAGAGAAGTGACGTGGAGGATTTTTTCAATGAGATGAGCATCTCTTGTGATGGCCGTGTCGAATGGCAAACCTTCCAGACCTTCATGCTGCAGCATTATAAGCACATCACACAGTCGATGCAGCCCTGTCAGAATCTACCCATCTCACATCCTTTAATACGCAAGTGTACCTATAACAAGCAAGAAGCTATTGTGCGTGTGTTGGCATTGACTCGGTCTCCACCAATGCGGTACGTCAGTGTCAGCAAGAGAGGAACTCTCATCGCCTGGAACCGTCATCTGAACCACTTAAAGCCACTGGAGATGTGGGGTGAGGCCTTTAATAAAAGGCATCATCGTAAGCGGTTCCAGGGTTGGGTCACAGATGCTGTCTACATGGCAAACGTTCACAAGATAGCAGTGGCGACCCTGAACAGGGGCATCCATTTCTTTGACGTTACCACTGCATCTGGTTTCGAGCAGATTCATTTGTACGGACTGACTCATTTCGCCAGTGCTCTGTGTTATTGGTATGAGACAGAGGCGCCAGGAGAAAAGTGTGTGCTGATGTGGGGAGATGAGAAGGGCTCTGTGAATTTGCTGTGGTTTCTTCAGCCTTTCAAGGGGCTTTTTGCCATGCCTTTCACCATACAAAGCGGCCCAGTCAAGATCTCTCTGCAAGATATATACATGCACAGTGCACTGGCCTCCTATCAGCACATCCCAAAGATCCACAGCATGCTGATCAACAGAATCCTGTATGAGCCTCGTGATGACATCATCATTACATCATCAGACAGTTCAGCCAGCGCTGTCGTCATCATTGATGTCAATCAAAAGAGAGAGAAATATGTCTGGAGAATAGAGAAGGGAGTGAAGTGTTTTGACTTCAGCTGCTCTCTCGGTCTGCTGGTAACTGCTGGAGTGGGTCCGGCTGTCAGACTGTGGAACCGATATGTGACCTCCCGCCCGACCGCAGTCCTGCGCAGTCACCAGACCACTGTGGTGGATGTGGTTATTCACCAGGCTCTGGGCAAGATCTTCAGCTACTCTAAAGATGCTGTGCTGAAAATTTGGGATATTCCGTCTCAGCAATGCGTAAAAACACTCCACCTGAATTTCCCCAATATCCAAGCGGGTGTTAGTCCAGAGCAGGGCAGCTTCCCTCTTCTCCTCAACCTGAGCTCAGATCCAGTGCTGCTGGTGACCTGTAGAGAGTATGTGGCCCTGCTGCAGCTGGACAAGACAGAAACCAGAAGCAGGTCTGACCTGTACACCTGCGCCCTCTATAATCCTCATCTTCAACAGGTTgCCTGTGCTGACTCCACATTGACTGTGTGGGATGTGAAAACAGGCATTAGGAGGATGGAGATCAGGAACGCTCACGGTAATGAGGAGGTTTCTTGTATGGCTCTAGATGTTCACCAGCGCAGACTGATTACTGCAGCCACCAATGGCACTATCAAGGTGTGGAACCTTCTGAATGGCCTCAATCTTCATAATCTAGAGCCGGTCTCCAACAAAGAAGTCACAGGGATCATCTGTCATCATGATGACCAGCTTCTGGCCACAGGCTGGAGTCGACTGATCACTCAGTACAGCATTGCATTTTCAAGCGACATCTACATTAAAGCAAACCTGTCCTGGAAGTCTGGTTGTCAGCACAGCGAGGATATCCTGGCTATGGATCACTGTCCCGTGCTGGGGCTTCTGGCTACTGGGAGTTACGATGGAGAGATCATTATATGGGCCCTTGCTCTTCAGAAGCCCTTCACAAGAGTGCAGACAGTTCATCTGCCTGTCCACCGGCTGCTGTTCCTGCAGAGCCGCGCTCAGCAGAGTCATCTGAGGAAAGCTGCTGTGCTGCTCAGTTCACAGGCTGGGTTTGTCTGCTGCTGGAGCGTCTGCGGGCCCAGACATAACCACGGACAGTTCTATGTGCCTGATAAATCTGGTGAGAATGTGACGGGTTTCAGCACAGACCCAGAAAATAATCTACTTGTCACTGGAGACACAACAGGATGCATTAAAGTCTGGGACATCGCTCAGTATGCCTTAAACAATGGAGATATGGAGTCTGCGGCTGGTTTTCCTCCACTGCTGCACTCTTGGAGTGGCCATGAGAGGGCGATAGTGAGCAGTGAGGTCTTGCTGTATGAGTCTCGATTCTTCATTCTGAGCGTGTCCATGGACCGCAGGGCCTGTTTGTGGACCCATGAAGGAAGTTGCGTGGGATGTTTTGGAGAGGAGCAGCAATGGGATTTGAGCAATCCAGACACTTACCAAACCAATAGAAAACACAAccgaccaatcagagtagaagaagaagaagaggagaagaTCAAggacagccaatcacatgccagTGTCAAGAGTTTTATCTGTTGGGGTGAAAGATCAGAGGCTGACCGACAACAAACAGAATCAGACGTAGATCTACAAGTTGATGATTCAGCTCCACAGAGCCCAGACTTTGAGTTCCTGTCTGACGATAGTAGCTCTTTGGAAAGCATCCCGCTGCCTAAACACAGTAAGGTTCTGTCTGGAGATCAAGTGTTCAGGGATCTGGGGTTAAGGACGACGACGAGGCAATGCAGACGACAGAAAGTTGGCCATGAAAAACTGTGTCGCTATGGGAATGAGTTCACACCGTTTCAGACTCTGGAGCTGCCGGAGATCAGCGAGCTTGGAGATGAAGCAGTGAAGCCCTGGAAACTGAAGATACAGCAGATTTCCTCCAGGGGAACAGAAGTGAGctcttgcatgttctcctctgaAGGGTCTTTGCTCTGTGAGTCACTGGATGATTGGTTTTAGTTGCACAGGTCAGTGAATATGCACTgatttatattgttgttgttctgcACAGAAATCACTTCCGCTGTGTTGatagtcttattttttttttgtgaatgtattttaagaatattgttgttttttggcATTTGCTGATTCTTTGCTTTccatttgaatcatttatttatatggaAATATAGTTTTACCAATAAATAATAGATTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096532

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009875 True 3300 mRNA 0.48 21 2951186 2993095

Neighbor

gene id symbol gene type direction distance location
XLOC_005076 fam20a coding downstream 11116 2906610 ~ 2940070 (-)
XLOC_005075 zdhhc16b coding downstream 81602 2849584 ~ 2869584 (-)
XLOC_005074 ubtd1b coding downstream 150327 2780190 ~ 2800859 (-)
XLOC_005073 NA coding downstream 206545 2703355 ~ 2744641 (-)
XLOC_005072 NA coding downstream 281686 2625669 ~ 2669500 (-)
XLOC_005078 dcxr coding upstream 50213 3043308 ~ 3053882 (-)
XLOC_005079 rfng coding upstream 61347 3054442 ~ 3077395 (-)
XLOC_005080 col1a1b coding upstream 102604 3095699 ~ 3133483 (-)
XLOC_005081 si:ch1073-13h15.3 coding upstream 227190 3220285 ~ 3237561 (-)
XLOC_005082 gngt2b coding upstream 255959 3249054 ~ 3252263 (-)
XLOC_005071 CU929359.1 non-coding downstream 333676 2579237 ~ 2617510 (-)
XLOC_005069 NA non-coding downstream 471255 2067963 ~ 2479931 (-)
XLOC_005068 NA non-coding downstream 949362 2000636 ~ 2001824 (-)
XLOC_005083 NA non-coding upstream 288661 3281756 ~ 3284909 (-)
XLOC_005086 NA non-coding upstream 526073 3519168 ~ 3544016 (-)
XLOC_005087 NA non-coding upstream 576652 3569747 ~ 3570081 (-)
XLOC_005092 NA non-coding upstream 789526 3782621 ~ 3786382 (-)
XLOC_005094 NA non-coding upstream 867369 3860464 ~ 3865234 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_06242992_06270894 NA coding CI01000047 null 6242727 ~ 6272791 (-)