Gene
RNA
| Item | Value |
|---|---|
| gene id | ptpmt1 |
| gene name | ptpmt1,LOC102795413 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053114.1 |
| NCBI id | CM020911.1 |
| chromosome length | 46923577 |
| location | 40937815 ~ 40948565 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| ptpmt1 | Predicted to enable phosphatidylglycerophosphatase activity and phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human PTPMT1 (protein tyrosine phosphatase mitochondrial 1). |
| description |
|---|
| phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0035335 | peptidyl-tyrosine dephosphorylation | biological_process |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| K14165 | K14165; atypical dual specificity phosphatase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039795679.1 | True | 959 | mRNA | 0.53 | 4 | 40937815 | 40948565 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ndufs3 | ndufs3 | coding | downstream | 3259 | 40929470 ~ 40934556 (-) |
| LOC120556279 | atp6v0d1,LOC103462946,LOC107563463 | coding | downstream | 255458 | 40672915 ~ 40682357 (-) |
| foxr1 | NA | coding | downstream | 266213 | 40666272 ~ 40671602 (-) |
| LOC120556133 | NA | coding | downstream | 285064 | 40648347 ~ 40652751 (-) |
| LOC120556376 | NA | coding | downstream | 306690 | 40598769 ~ 40631125 (-) |
| prc1b | prc1,LOC102796011 | coding | upstream | 4350 | 40952915 ~ 40973681 (-) |
| vps33b | vps33b | coding | upstream | 26225 | 40974790 ~ 40998777 (-) |
| hypk | hypk | coding | upstream | 66904 | 41015469 ~ 41018907 (-) |
| adamtsl5 | adamtsl5 | coding | upstream | 114475 | 41063040 ~ 41115545 (-) |
| crtc3 | LOC103367860 | coding | upstream | 197953 | 41146518 ~ 41191697 (-) |
| G33196 | NA | non-coding | downstream | 751 | 40936841 ~ 40937064 (-) |
| G33168 | NA | non-coding | downstream | 12761 | 40920334 ~ 40925054 (-) |
| G33167 | c1qtnf4,LOC102794664 | non-coding | downstream | 19231 | 40918227 ~ 40918584 (-) |
| G33109 | NA | non-coding | downstream | 373884 | 40562192 ~ 40563931 (-) |
| G33061 | NA | non-coding | downstream | 543112 | 40281473 ~ 40394703 (-) |
| G33347 | NA | non-coding | upstream | 496964 | 41445529 ~ 41445742 (-) |
| G33368 | NA | non-coding | upstream | 612267 | 41560832 ~ 41565475 (-) |
| G33369 | NA | non-coding | upstream | 617650 | 41566215 ~ 41566420 (-) |
| G33371 | znf408,LOC104941494 | non-coding | upstream | 622437 | 41571002 ~ 41571236 (-) |
| G33383 | LOC103462981,LOC106924557,LOC102221671,LOC103155220 | non-coding | upstream | 721835 | 41670400 ~ 41672862 (-) |
| LOC120556513 | NA | other | downstream | 274158 | 40661364 ~ 40663657 (-) |
| G33122 | NA | other | downstream | 275194 | 40648676 ~ 40662621 (-) |
| LOC120556146 | NA | other | downstream | 348151 | 40564241 ~ 40589664 (-) |
| LOC120556511 | LOC102208128,LOC101468289 | other | downstream | 795767 | 40049624 ~ 40142048 (-) |
| slc6a5 | slc6a5 | other | downstream | 1702069 | 39205275 ~ 39235746 (-) |
| sirt3 | sirt3 | other | upstream | 809062 | 41757627 ~ 41764896 (-) |
| G33711 | NA | other | upstream | 1450726 | 42399291 ~ 42402136 (-) |
| G33796 | NA | other | upstream | 2036658 | 42985223 ~ 42990770 (-) |
| G33847 | NA | other | upstream | 2266069 | 43214634 ~ 43214987 (-) |
| G33914 | NA | other | upstream | 2504147 | 43452712 ~ 43456847 (-) |
