bnc1 (bnc1)


Basic Information

Item Value
gene id bnc1
gene name bnc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7186729 ~ 7211577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795696.1
CCAGTCCACGGCAACATTagaggagagaaagcagaggaggcgtgtgtatgtatgtgtgtgtgtgcatctgtgcagTGAGAGTAGAAGCACAGTGACTACTACTCTTTTTGTGGAGTGTCGgtggctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaagactaAGAAGCggagcacgtgtgtgtgtgtgtgtgtgttgttgaagGAGATGCTGCGGGGTGTGATGGCTCTTTTGCGTTAGTATTTGAGCGGACAGGAGAGTTGAAGGCAGTTGTTTTGTGGGACTCGCGGGGAATGGCAAACTCCACGGTATCCTTGGAAACCTCCGACTAAATGACAATGGCTGAGGCTATCTGCTGCACTTTGGTGAACTGTAACTGTGACAGCTTCAAGTCCGGGAAGCTGAAGAGGAGGCAGTGTGAAAACTGCAAGCATGGCTGGGTGGCACACGcCCTGAGTAAACTGAAGGTGCACCACATGTACCAGAGCAGCCAGGTGGAGATCGTGCATTCCAACGTGGTGTTCGATATCTGCAGCCTGATGCTGTACGGCACCCAGGCCATCCCCATCCGCCTCAAGATCCTGCTGGACCGCCTGTTCTCCGTGCTCAAGCAGGAGGAGGTCATCCAGATCCTCAACGCACTGGACTGGACCCTGCAGGACTACATACGGGGATACGTGCTCCAGgatgtagcagggaaGGTGCTGGACCGGTGGGCCATCATGACGTTCGAGGAGGAGATTGCCACACTGCAGCAGTTCCTGCGTTTTGGCGAGACCAAGTCCATAGTGGAGCTGATGGCTCTGCAGGACAAGGAGGGCCAGGCAGTGTTGGTTCCCAGCACTCGCACCAACTCAGACATCCGCACTTTCATTGAGCGCAACACCCCACGCACTGCTGCCAACCTCTCCACATCCAAAGTCGATAAGCTGAGCAGCAACAGCATGCACCACTTTGAGAACTTTGTCAACAGCATGGCCTTTATGCTGCCCTTCCAACTGTTAGGCTCTGTTCCTGCTCCGTTTTTGGGCTCACCAACAGGGGCACCGCCGCACCAGCACCaccagcagcaccagcagccATTCCGCGGATCAATGGAGCAGCAGACTCAGAGACGAGATGATCAAGGTCGGGATGGTCTAGGAAGGGACAATCCCCTCCCTCTTTCCCACCCTCCAGAGAGCAGCCTGCTAGGTTCCAGCTCTGTCTCATTCACTGCTGATCTAGACCAAAGCGGAGACAAGCCAATGGACAGcctctccaccaccaccacaaagATCGAGGCAGAGGACTTCTCCACTAGTGACAACTACTCGGATGGGCCATCCACGCCGTGCACACCCTCCATGAGCTCTGACGTAACCCAGATGTCACCCGAGGGCAAGCTGCGCTCTTTGGACAGGAATGGGTGCAGCGGTGGAGGGGTCTCGGGAGGAGGTGGATGCTCTTTGAAGAAAGGTCGGGTATTTTGCAATGCCTGTGAGAAGACATTCTACGACAAAGGAACTCTGAAAATCCACTACAATGCAGTGCACCTGAAGATTAAGCACAAGTGTACCATCGAGGGCTGTAACATGGTGTTCAGCTCGCTGCGCAGTCGCAATCGCCATAGTGCCAACCCCAACCCGCGGCTACACATGCCAATGAACCGCAACAACCGGGACAAAGACCTGCGGGGCAGCTTGTCTGGTGATGAGAGCTCTCAAGGAGAGAAGAGGTCTGAATATGGAACCCCCatccctgtctgctctgcagAAAGCCATAAGTCAGTGCCCAGCTACATGGTGAGCCATGTCGACACTGGCTCGAAACTCCACAGCAGCTCGTTCCCCAGCATGGGCCAGAGTGGCATCCTCTTCCCTAACTTAAAAACAGTACAGCCAGTCCTGCCTTTCTACCGCAGCCTGGTAACTCCGGCAGAGCTTGCCAACACCCCAGGCACACTACCCTCCCTACCTCTGTTATCCTCCTCCGTACCTGTCAAGCCCATCACAGCCCCTGATCCTTGCATGACAGACCCCATACCAAAGAAAAAGTCAAGGAAGTCAAGCATGCCAATAAAGATAGAGAAGGAAGTGATAGAGCGGGATGAGGAGATGGACAAGGGGAGCAGCTCTGAGGACGAGGCTCCTTTACAGGACAGGAACAAGGAAGAGTGTGACGGACGCCGAGCAGAAGGACATATGTGCGCAAGACAAGctagggaggagagaggggctTTCGTTGGGGAAGAGAAGGAAAGGGAGGGCGCCAAGCATCTGTTGGACCAATCCTTAGATACAGAAATGACAGCGAGAGAGGACAAAGATGATGAGCAAAGGCAAGCTGAAACCTCTGCACCCTCGCCCTTCCGAGACAGACTGATGGAGAATCACTGTGACAACAACTTACTCTGTCAGGAACCAAATGGCAATGAAGACAGGGAGGACAGGGATCATGCAAACTCGCTGCATGCAGCTGACAAGATTTCCGAGCTCCGATGGGATGAGGGTGAGCACAGGCTGACTAACGGGGGAGCTCTCCAGCTCATAGACCGCCAGAGAGAGGGATTGGGATTGGACAGCTGTGTAGACGACTACAGTGACTCAGGTTTGTCTCACCTCGACCCCAGCGCTGACCTGCCACACCACTGTGAGATCTGCAGTAAGACCTTTAAGAACCCCTACAGCGTCAAGATGCACTACCAAAATGTCCACCTGAAGGAGATGCACATGTGCACAGTGGACGGCTGCAATGCTGCCTTCCCCTCCCGCAGGAGCCGAGACAGACACAGTGCAAATTTGAACCTACACAACAAACTGCTGACCAAAGACTCATTCAGCCCAGCCAACACCCTATACTTGCCCTCATCCCACTGTAGAGACAGAGACTCTGTTGGCCGAGACTACTACCAAGACCAGCGGGACAGAGATCTGCCCCATCGAGACCCAACTAGCCAAACCTCTGTCATCTTCCGAGGACACAATCGCATGGGCCTGGTCTTCCCAATGAGCAAAATGTCTACTGCACCAACCAATGCTGAGACCTCTCCCTTAGGAGAAATGGAGGGATCAGGAGTAGGAGAAGGGGGTGGAAATGGGGACGATGGGGCAGTCTTGGACCTGAGCACTTCCTCCTCTGCCCCACCTCGTGGCAGCGGCAGTGCTCGATCTTCCTGGGACTCAGACGGTGCCGGTAGTGAGGAAGGGGAAGGGATTGAAGAGGATGAGGAGGCGCTCCCCATGGAGGACAGCGATGAAAGCTGCGATGGGATCGGCATGGGGAGGCCTGGGGTCGAGGAGTTGGCACTCGGGGAAGAGAGGACCCTGGGCTGTATTGGGGAGGACAAGGCGGGCTTCATAGGCGGGGGTGGATCTCCCATAACCTGCCATGTCTGCCAAAAGGTCTACAGCAACAAGGGCACATTCAGAGCCCATTACAAGACTGTCCATCTGCGACTGCTTCACAAGTGTAAAGTCCCTGGCTGTGATACATCCTTCTCCTCTGTGCGAAGCAGAAACCGGCACAGCCAGAACCCGAACCTTCACAGGAACCTAGCCGTTAGCTCAGGTGCCACAATAGACCAGGAGTAGGGTTTTGAGCTCATATGCCAACATGACTGATTTCCTTGGTTCTAATtgttcttttgttgttgttgttgttgttgttgttgtagttgttgtttttgggcACCTAAAGAAGGCTCACCAATTAGCACTTTTTAAATTCCATATCGTAGTCCAATACTTTtgtcagagagaaaaaaaataaagtacaatAAGGAGTTCATTTGTTGTGGCAAATGCAACTTCCTTTTCTAACAAATGGCTTTACACACATCCGTCTGTGTTTACACTTCAACATATAAAGAATAACTGAAACATACACTAAATTAATTTTCAACATTGAGCAATGCAACCTTCCAGTCTTAATCTTCTGTTGTGACGCAGTACtgatttttgttttgcattGGTTTGCCTTACAGCCCAGTTTAGACCTTAAAAAGATGAATTTGTATGAACTGAATTTGTCCATGTGTTGTCCAAAGTGAGAGTTGATCCATGAAACTGTATCATGCGAGTTATTTCTTTCTGGTGTTTTTGTTGTCAGATATCCATATCTTCCCTGTGAAGCTGTGCATAATGTATTGATCAAAAGCAGTAGTGAAGTAACCTCTACATGTGTCATTTCATTCATTTGGACAATAGTTTTCAAAAATAGTCTTTGTTGAAAAGCTATAGTGTTGTAAGCTTGACCAATAAGTTATTGTGTGGTATTATATATGATCTGTCTTTACTGTTTGTTGCATACTGCTAATGTTGACCAAAGATTTTTTTCAGCCCACAGGTGTGTATAGAAACCCCTTCATTATTTGTGAAGGGTTTGCAGTATTAAAAGGGCCCGCCCAGTCTTTTCTCATCTACTTTGTGATTAACAGCAGTATTCAGGGGTGGGCTCTGTTGTAAGATAAAATAGAATTCACCAACACAAtcaaaaaaaacagcttttgaCTGATCTGGGTGAAAAGAATATCTTGATTTTGGTGGagtttttgtaaacaaaatctGCTCATGGGACTAGACTTGATTAAGGTATTGCTCTTGTATTGTTTGTGTGGTTGCTTGCAGTATCCTGACTGACTGGACAAACAGCAGGAATAAATGCTGTGTCTGGAGGCTAGAAGCATGTACTGTGAATAAGTCAAACActgagaaataaaaagaaaaaaaagaaatgcaatttaTAATAATGGCCCCACACGTGAGCACACCCTAAAATAGAACTGGTAAACAATATGTTTATTGAACTGTATATTCTGTGAATAGAGTAATTTGTTATCTGAAAGAAAccaaaaaatatactgtataaaataatGTCACCACTAACATTAcatggttttttttcttttctttttttttgtgaatgaacaAGAACATTGTGTTGTACATTATGATTATTTCATCATGGTCTATTGTTCTGATTTTGCTCTACAATCTGCATATTGTTTTCATTCTGTATTTAAATGGAATGGGCCCAATTTAAGATCCCATTAGTTTGTTGTTtgaatttgttaaaaaaaggagCAAAATCTACATATGTTGACAGGTGTTCATGTTTCCTTTGATTTAATGTTACAATATTCATTCcaattaaataaaaagccaTATGTTTGCAAGCCTCA

Function

symbol description
bnc1 Is expressed in several structures, including ectoderm; mesoderm; nervous system; otic vesicle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 16. Orthologous to human BNC1 (basonuclin 1).

NR:

description
PREDICTED: zinc finger protein basonuclin-1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24146 BNC; zinc finger protein basonuclin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795696.1 True 5198 mRNA 0.48 6 7186729 7211577

Neighbor

gene id symbol gene type direction distance location
LOC120555501 NA coding upstream 691008 6493937 ~ 6495721 (+)
mtch2 mtch2 coding upstream 875589 6295097 ~ 6311140 (+)
trnal-uaa_1 NA coding upstream 1133832 6052815 ~ 6052897 (+)
trnal-uaa NA coding upstream 1134760 6051887 ~ 6051969 (+)
fadd NA coding upstream 1154575 6026435 ~ 6032154 (+)
sh3gl3a LOC100692766,LOC101467334,LOC103355412,LOC102293456 coding downstream 20971 7232548 ~ 7290870 (+)
LOC120555848 LOC107591295,LOC105891088 coding downstream 106332 7317909 ~ 7330702 (+)
adamtsl3 LOC101469981 coding downstream 143300 7354877 ~ 7670801 (+)
LOC120555922 NA coding downstream 564056 7775633 ~ 7783499 (+)
efl1 efl1 coding downstream 727635 7939212 ~ 8069667 (+)
LOC120556370 NA non-coding upstream 141568 7042183 ~ 7045161 (+)
G25902 NA non-coding upstream 160968 7023866 ~ 7025761 (+)
G25895 NA non-coding upstream 193525 6992995 ~ 6993204 (+)
G25893 NA non-coding upstream 194798 6987512 ~ 6991931 (+)
G25888 NA non-coding upstream 206974 6974335 ~ 6979755 (+)
G25942 NA non-coding downstream 86922 7298499 ~ 7298701 (+)
G25950 NA non-coding downstream 119133 7330710 ~ 7337252 (+)
LOC120555850 NA non-coding downstream 418545 7630122 ~ 7632825 (+)
LOC120555849 NA non-coding downstream 421254 7632831 ~ 7634497 (+)
G25959 NA non-coding downstream 454219 7665796 ~ 7673941 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other upstream 181051 6993956 ~ 7005678 (+)
rwdd3 rwdd3 other upstream 791023 6382570 ~ 6395706 (+)
LOC120555541 NA other upstream 896953 6262410 ~ 6289776 (+)
G25743 NA other upstream 898652 6287048 ~ 6288077 (+)
G25708 NA other upstream 1151536 6034209 ~ 6035193 (+)
G26205 NA other downstream 1542124 8753701 ~ 8760301 (+)
G26236 NA other downstream 1857152 9068729 ~ 9155343 (+)
cers3a cers3,LOC102798777 other downstream 2121652 9333229 ~ 9378611 (+)
adamts17 adamts17 other downstream 2179531 9391108 ~ 9604462 (+)
asb7 asb7,LOC102792420 other downstream 2442001 9653578 ~ 9677027 (+)

Expression


Co-expression Network