LOC120556255 (apip,LOC102794906)


Basic Information

Item Value
gene id LOC120556255
gene name apip,LOC102794906
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13750416 ~ 13765627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795716.1
AAAAAGGCGTTCAGGATGTCTGTTGTTTCGGGTCAGGCTACAGAAATGAAaggctcctgttatctaaaGGAGAAGGAGCATCCTCGTGTTCTCATCCCGGAGTTATGCCGACTCTTCTACCAGCTGGGATGGGTGACGGGGACAGGCGGAGGGATCAGTCTGAGACGAGGAGAGCAGATCTACATCGCACCATCAGGCATCCAGAAAGAGAGAATACAGCCAGAAGACATATTTGTGTGTGACATGGAGGAGAGGAACATCAGCTGTCCACCTgcctggaagaagttaaagaAGAGCCAGTGTACACCACTTTTCATGAATGCCTATACTATGAGAGGGGCACAGGCAGTTATACACACCCACTCCAAGGCTGCTGTCATGGCAACACTGCTGTATCCTGGCAAAGAGTTCAGGATAACACACCAGGAGATGATCAAGGGGATTCGTAAGGGCACATCAGGCACTAACTATGGGTATGATGACAGCCTGGTGGTGCCTATTGTTGAAAATACACCAGAGGAGAAGGACTTGAAAGACCGGATGGCTCGGGCAATGGAGGAATATCCAGATTCATGTGCCGTCCTCGTCCGCCGACATGGTGTCTATGTCTGGGGCGAGTCGTGGGAAAAAGCTAAGACCATGTGTGAATGCTACGACTACCTGTTTGAGATCGCCGTCCAGATGAAGCAGTGTGGACTGGACCCTTCAGCCCTCCCAACGGAAgaaaaaggaatagtttgacattcaCTGGTGCTTTTAAAAGAGAAATTTGTTGCAGAAAGGTCAGAGGTGTTCAATCTGGATCGCAGATTGTAATCATTTGCCTTTCACGCCGGCTTGCTTCAAATTTGATGAGATTTGATGGTAAGGGCAGATCCAGGGTTAAAGGAAATGAAATGCCTGTGATCCGGAAGCACCTGGCTGCATAGCGCTGTGGGACAACTCTTGAATGAGCAGCTGGCATATCAAAGTCTCCAGGTTTAAATGCTTTTCCTATTGATGTTTGACTGCACTGGAATCCTGGTCTTAGTTTATGTCAGGCACGAATATATTGTGCATTTCAATTGATCTACAATGATGATTAACTGCCTTTGCGTCAACCAATAAAAACTGATGGGATGTCAA

Function

symbol description
apip Predicted to enable methylthioribulose 1-phosphate dehydratase activity and zinc ion binding activity. Predicted to be involved in L-methionine salvage from methylthioadenosine. Predicted to act upstream of or within apoptotic process and methionine biosynthetic process. Predicted to be active in cytoplasm. Orthologous to human APIP (APAF1 interacting protein).

NR:

description
PREDICTED: methylthioribulose-1-phosphate dehydratase isoform X2

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K08964 mtnB; methylthioribulose-1-phosphate dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795716.1 True 1125 mRNA 0.47 7 13750416 13765627

Neighbor

gene id symbol gene type direction distance location
slc1a2a LOC104925837,LOC100698156,LOC102211357,LOC103366006,LOC104946114,LOC101471102 coding upstream 27351 13697646 ~ 13723065 (+)
si:ch211-102l7.3 LOC102292170 coding upstream 53649 13678132 ~ 13696767 (+)
spg21 spg21,LOC102788283 coding upstream 479198 13252165 ~ 13271218 (+)
kbtbd13 NA coding upstream 542081 13204839 ~ 13208335 (+)
si:cabz01068815.1 NA coding upstream 574013 13144507 ~ 13176403 (+)
traf6 LOC103361723 coding downstream 282664 14048291 ~ 14055494 (+)
cdkn1ca NA coding downstream 327237 14092864 ~ 14094321 (+)
luzp2 luzp2 coding downstream 517532 14283159 ~ 14463293 (+)
fibinb fibin,LOC103373419,LOC106523552 coding downstream 937352 14702979 ~ 14706234 (+)
LOC120555721 arl14ep,LOC102778030,LOC103375558 coding downstream 1086658 14852285 ~ 14864789 (+)
G27220 NA non-coding upstream 5965 13737183 ~ 13744451 (+)
G27190 NA non-coding upstream 98921 13650883 ~ 13651495 (+)
G27179 NA non-coding upstream 332262 13417937 ~ 13418154 (+)
G27164 NA non-coding upstream 348481 13401726 ~ 13401935 (+)
G27163 NA non-coding upstream 359052 13391156 ~ 13391364 (+)
G27241 NA non-coding downstream 162572 13928199 ~ 13936728 (+)
LOC120555409 NA non-coding downstream 231486 13997113 ~ 14001647 (+)
G27306 NA non-coding downstream 457682 14223309 ~ 14224234 (+)
G27320 NA non-coding downstream 700851 14466478 ~ 14466680 (+)
LOC120556358 NA non-coding downstream 808570 14574197 ~ 14577703 (+)
slc35c1 slc35c1 other upstream 73803 13671477 ~ 13676613 (+)
LOC120556202 NA other upstream 512597 13235235 ~ 13237819 (+)
G27086 NA other upstream 640077 13109757 ~ 13110339 (+)
lto1 oraov1 other upstream 1837694 11903272 ~ 11912722 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 3890416 9814697 ~ 9860000 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 44308 13809935 ~ 13856423 (+)
bbox1 bbox1,LOC102798250 other downstream 942935 14708562 ~ 14735176 (+)
kcna4 kcna4 other downstream 1123763 14889390 ~ 14965062 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other downstream 1282250 15047877 ~ 15053622 (+)
LOC120556433 psma4,psa4,LOC106562664 other downstream 1675828 15441455 ~ 15446492 (+)

Expression


Co-expression Network