LOC120556258 (LOC103353205,LOC104951143)


Basic Information

Item Value
gene id LOC120556258
gene name LOC103353205,LOC104951143
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17534827 ~ 17548420 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795725.1
AACGTCACACGCCTTTAACTCGGGTATTATCGAAAAATCCCATGTCCCTCATTCATCACTTCGTCCTTCCTTAATAGTCGGAATTCCGTTTTTTTTCCCGACAGCACTTTAAGGCATCATTAGACGTCTAGCGGCACGAACAAACAATCCTGCGGAACAAACAAAGTAAACAAATATGAAAGGTCCCGGAAATGTTATAACAGCGACTTTAGCAACGTTTACTCTTCTACTTTGCCTGTGTTCAGTCAGAGGTGACTACTGTGAGGTGAATGTTTGCCGTAATGGAGGAACGTGTGTGACAGGGATAGGAGACGATCCATTCATCTGCATTTGTGCGGATGGCTTTGGTGGAGACACCTGCAACCTGACAGAGATAGGACCCTGCAGTCCTAACCCCTGTCAGAACGATGGGGCGTGTGAGATCATCACTCCAACCAGAAGAGGAGACGTTTTCAACGAGTACATCTGCAAGTGCCAGCCAGGCTTCGAGGGAGTGCATTGCCAGATCAaCGTGAACGACTGTGCCAACCAGCCCTGTAAGAATGGAGGGATATGTCGAGATCTTGATGGAGACTACACCTGCCAGTGCCCTTCACCGAATGTTGGAAAGCAGTGCCAGCTGCGTTGCATTTCTCTGCTGGGTATGGAGGGAGGAGCAATTGTGGAGTCCCAGATTTCAGCTTCCTCTGTGCACTATGGCATTCTGGGTCTTCAGCGCTGGGGCCCGGACTTGGCTCGACTCAACAACCAAGGCATCGTCAATGCCTGGACGTCAGCCGCTCATGACAAGAACCCCTGGATCGAGATTAATATGCAGAAGAAGATGCGTCTGACGGGCATCATCACTCAGGGTGCAAGTCGCATGGGCACGTCTGAGTACGTCAAGGCCTTCAAGGTGGCGAGCAGCTTTGATGGAAACGCTTATACCACTTACAGAGTGGATGGCCAACGGAGGGACAAGGTTTTCGTGGGCAACACAGATAACGACAGCACAAAGACCAACCTTTTTGACCCTCCTATCGTGGCCCAGTACATCCGCATCATCCCTGTGGTTTGCCGCAGGGCCTGCACACTGCGCATGGAACTGGTGGGCTGTGAACTTAATgTTTATTCAAACACGGCAGGTTGCTCAGAGCCTCTGGGAATGAAGTCTCGCCTCGTCTCAGATGGGCAGCTTTCAGCCTCCAGCTCGTTCCGCACATGGGGTATTGATACCTTCACGTGGCACCCTCAGTTTGCCCGACTGGATAAGCAGGGAAAAACAAACGCCTGGTCCCCTGCACACAATAACCGCTCAGAGTGGATCCAGGTCGACCTAGAGAAGACAAAGCGCCTCACAGGCATCATCACTCAGGGGGCCAAGGACTTTGGGGTGGTGCAGTTTGTGTCACTGTTTAAAGTTGCTTACAGTAACGATGGAGAGTCATGGAGTATGGTGAAGGAGGATAACACCAGCAATGATAAGCTTTTCCAAGGCAACATTGACAACAACACCCACAGGAAGAATCTATTCGAGCCTCCGTTCTACGCCCGATACATCCGAGTCGTCCCCTGGGAGTGGCACGAGCGCATCACTCTACGCATGGAGCTGCTGGGCTGCGATGATTAGAAACTCATCAGTCACTAATCTAACAGTGCTCCATCTTAATCCGGTCGCTCCATTTCCTTAAACCCCGGCAGAGAAATGGATCTGGGACAGAGTCATCGGTTCTGTACCCCTATTTGTTTCTCTGGATAAAGATTCTGTTGGTTGCTGGGACTGTAACACTCGTAGCACTTTCTGACGAatgacctttttatgtttttgttaataACATTGTTTGACATTGCTCACGGAGAATCTTCTATGAAGTAtcaattattttaatgttagTACCTTTGGATATAAACTAAATTTGCATAGATTTGCTCTTAGTCCTTATTATTAGCTCCCTCTAAGAATCAACATTTTTTTCAGGTTCCCTTGATAATAGTGTCCTTCACCTATTCCAGTTGAACTCCAAGCTAAGTTTTCAACTtttctgtccttcctttgcagTCCCACACCAGTTAACAACCCATATCTTTTAGTTTTAGCAGTGTGCAGAGGACAGATGACCAACATCCTCCCCAGCATACTCGCCGTATCTCACCATAGCAAGCTGCTTAGTTTAGTTACTCGAGCACAAACTATAACGACGCAGGGCCTGTGCAATATGGAGTATATTTTGGCATTTCCAACTATCCTGGGAGAGATAACATTTTCCGAGAGTAGAACATTTACAACCTTCCAGTTTGAACTGCAGCACACTGATCTGTCAATCAAATGACGGACTGACAAACTGTAGGGCTTTTTCATGTGAAgtcattcatgtttttttacacattttatccGCTTATTCCGCTTTCTTACAAATAATATCATTCTAATTTAATCCTTTTTACAACACATGAAATATGTAGAAATATGTGTAGAAAAtattgttttacattctttttttattattattaattgttgGTC
>XM_039795726.1
ACAACGTCACACGCCTTTAACTCGGGTATTATCGAAAAATCCCATGTCCCTCATTCATCACTTCGTCCTTCCTTAATAGTCGGAATTCCGTTTTTTTTCCCGACAGCACTTTAAGGCATCATTAGACGTCTAGCGGCACGAACAAACAATCCTGCGGAACAAACAAAGTAAACAAATATGAAAGGTCCCGGAAATGTTATAACAGCGACTTTAGCAACGTTTACTCTTCTACTTTGCCTGTGTTCAGTCAGAGGTGACTACTGTGAGGTGAATGTTTGCCGTAATGGAGGAACGTGTGTGACAGGGATAGGAGACGATCCATTCATCTGCATTTGTGCGGATGGCTTTGGTGGAGACACCTGCAACCTGACAGAGATAGGACCCTGCAGTCCTAACCCCTGTCAGAACGATGGGGCGTGTGAGATCATCACTCCAACCAGAAGAGGAGACGTTTTCAACGAGTACATCTGCAAGTGCCAGCCAGGCTTCGAGGGAGTGCATTGCCAGATCAaCGTGAACGACTGTGCCAACCAGCCCTGTAAGAATGGAGGGATATGTCGAGATCTTGATGGAGACTACACCTGCCAGTGCCCTTCACCGAATGTTGGAAAGCAGTGCCAGCTGCGTTGCATTTCTCTGCTGGGTATGGAGGGAGGAGCAATTGTGGAGTCCCAGATTTCAGCTTCCTCTGTGCACTATGGCATTCTGGGTCTTCAGCGCTGGGGCCCGGACTTGGCTCGACTCAACAACCAAGGCATCGTCAATGCCTGGACGTCAGCCGCTCATGACAAGAACCCCTGGATCGAGATTAATATGCAGAAGAAGATGCGTCTGACGGGCATCATCACTCAGGGTGCAAGTCGCATGGGCACGTCTGAGTACGTCAAGGCCTTCAAGGTGGCGAGCAGCTTTGATGGAAACGCTTATACCACTTACAGAGTGGATGGCCAACGGAGGGACAAGGTTTTCGTGGGCAACACAGATAACGACAGCACAAAGACCAACCTTTTTGACCCTCCTATCGTGGCCCAGTACATCCGCATCATCCCTGTGGTTTGCCGCAGGGCCTGCACACTGCGCATGGAACTGGTGGGCTGTGAACTTAATgGTTGCTCAGAGCCTCTGGGAATGAAGTCTCGCCTCGTCTCAGATGGGCAGCTTTCAGCCTCCAGCTCGTTCCGCACATGGGGTATTGATACCTTCACGTGGCACCCTCAGTTTGCCCGACTGGATAAGCAGGGAAAAACAAACGCCTGGTCCCCTGCACACAATAACCGCTCAGAGTGGATCCAGGTCGACCTAGAGAAGACAAAGCGCCTCACAGGCATCATCACTCAGGGGGCCAAGGACTTTGGGGTGGTGCAGTTTGTGTCACTGTTTAAAGTTGCTTACAGTAACGATGGAGAGTCATGGAGTATGGTGAAGGAGGATAACACCAGCAATGATAAGCTTTTCCAAGGCAACATTGACAACAACACCCACAGGAAGAATCTATTCGAGCCTCCGTTCTACGCCCGATACATCCGAGTCGTCCCCTGGGAGTGGCACGAGCGCATCACTCTACGCATGGAGCTGCTGGGCTGCGATGATTAGAAACTCATCAGTCACTAATCTAACAGTGCTCCATCTTAATCCGGTCGCTCCATTTCCTTAAACCCCGGCAGAGAAATGGATCTGGGACAGAGTCATCGGTTCTGTACCCCTATTTGTTTCTCTGGATAAAGATTCTGTTGGTTGCTGGGACTGTAACACTCGTAGCACTTTCTGACGAatgacctttttatgtttttgttaataACATTGTTTGACATTGCTCACGGAGAATCTTCTATGAAGTAtcaattattttaatgttagTACCTTTGGATATAAACTAAATTTGCATAGATTTGCTCTTAGTCCTTATTATTAGCTCCCTCTAAGAATCAACATTTTTTTCAGGTTCCCTTGATAATAGTGTCCTTCACCTATTCCAGTTGAACTCCAAGCTAAGTTTTCAACTtttctgtccttcctttgcagTCCCACACCAGTTAACAACCCATATCTTTTAGTTTTAGCAGTGTGCAGAGGACAGATGACCAACATCCTCCCCAGCATACTCGCCGTATCTCACCATAGCAAGCTGCTTAGTTTAGTTACTCGAGCACAAACTATAACGACGCAGGGCCTGTGCAATATGGAGTATATTTTGGCATTTCCAACTATCCTGGGAGAGATAACATTTTCCGAGAGTAGAACATTTACAACCTTCCAGTTTGAACTGCAGCACACTGATCTGTCAATCAAATGACGGACTGACAAACTGTAGGGCTTTTTCATGTGAAgtcattcatgtttttttacacattttatccGCTTATTCCGCTTTCTTACAAATAATATCATTCTAATTTAATCCTTTTTACAACACATGAAATATGTAGAAATATGTGTAGAAAAtattgttttacattctttttttattattattaattgttgGTCT

Function

NR:

description
PREDICTED: EGF-like repeat and discoidin I-like domain-containing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795725.1 True 2500 mRNA 0.46 10 17534829 17548419
XM_039795726.1 False 2485 mRNA 0.46 10 17534827 17548420

Neighbor

gene id symbol gene type direction distance location
rlbp1a LOC104951141,LOC103353204 coding upstream 21663 17508105 ~ 17513164 (+)
slc39a1 LOC104951142,LOC103353202,LOC105936366 coding upstream 29721 17497420 ~ 17505106 (+)
LOC120556405 kif23,LOC104944434 coding upstream 808136 16701035 ~ 16726691 (+)
paqr5b paqr5 coding upstream 872098 16651817 ~ 16662729 (+)
glceb glce coding upstream 891980 16581385 ~ 16642847 (+)
LOC120556259 LOC104951145 coding downstream 1570 17549990 ~ 17556201 (+)
mibp2 LOC100693649,LOC103353206,LOC102204817 coding downstream 15311 17563731 ~ 17566207 (+)
slc30a4 slc30a4 coding downstream 30895 17579315 ~ 17595161 (+)
LOC120555872 LOC104951150,LOC103379093 coding downstream 61041 17609461 ~ 17624532 (+)
cops2 cops2 coding downstream 146688 17695108 ~ 17702125 (+)
G27895 NA non-coding upstream 39054 17494748 ~ 17495773 (+)
G27884 NA non-coding upstream 69183 17381379 ~ 17465644 (+)
G27879 NA non-coding upstream 220737 17313888 ~ 17314090 (+)
G27877 NA non-coding upstream 239876 17292715 ~ 17294951 (+)
G27840 NA non-coding upstream 362356 17172255 ~ 17172471 (+)
G27977 NA non-coding downstream 277444 17825864 ~ 17826910 (+)
G28066 slc24a5,LOC102781271 non-coding downstream 323326 17871746 ~ 17876173 (+)
G28065 NA non-coding downstream 340341 17888761 ~ 17889217 (+)
G28083 NA non-coding downstream 370480 17918900 ~ 17919196 (+)
LOC120555993 NA non-coding downstream 456408 18004828 ~ 18181201 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 2048376 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 2088335 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 2481205 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 2569765 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 2799651 14708562 ~ 14735176 (+)
LOC120555788 NA other downstream 176125 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 1013453 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 1525888 19074308 ~ 19087064 (+)
G28581 NA other downstream 1938826 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 1963936 19512356 ~ 19520218 (+)

Expression


Co-expression Network