LOC120556269 (tm6sf1)


Basic Information

Item Value
gene id LOC120556269
gene name tm6sf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18659862 ~ 18663990 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795743.1
gagaaggcgaGAAAGACCAGAAGAACAAGAGAAGCATGCCTGCAGGAGCTGAATTGGAAGTTTTTGCCTTGTTTTCGGTGTTAGAAtcgtgacttttttttattccttgaGATATGACTAAACAGGAGCGTCTTTAGcagttggatttttttttttataatctcaATTCTGTCACAAGATAAATCGCTCCAACCTGGTCCGCTATGAGCGCGTCTGCAGGGACTGGAGTGTTTGTGCTCTCCTTGATGTCCATCCCCATCTGCTATTTATTTAATTCCCTCATTTACAGCAACAGTGCTGACGCTTTCTTCTTCGCTGGGTGTTCAACAGTCCTGATCCTGGCCATTTCAGCTCGTTTTATACTCAAGAAGAAGGCTCCAGTAGATCCTCTTTTCTATGTGTATGCAGTGTACACATTCCTCAGTGTGGTGAATCTGATCATTGGGCTGGAACAGGACAACATCATTGATGGATTTGTGACGTTTTACCTCAGAGAGGCAGATCCACATATTAACACAGCACATGGACACATGATCTCCTATTGGGATGGCTGTGTGCATTATCTCATCTATCTGCTAATGATTGCTGCAATTACTTGGGGGGACAGTTACAGAGCCATTGGACTCTACTGGGTGGGATCTTTTCTCATGCGTGCCATAGTCTACATTCTTGGGAATGCTGTGGGGAAATATGGGACCCATGTtagtcctctcttcctcctccacatgCTATATATCTCAGTGTCTGTCTGGGCCTGCTTCCGCACCTTCAGCCAGCCCTCCACATGGGATGCTCAGTTTCCTaGCATCCAGGAGGCggaaagaaaatgtttactCCACAGACCTCTGGACCTACTGTTCATCATCTACCTCATCCTTGCTTTTGCTTTCTGTGTCTTCAGAGGCCTGgttGTTCTGGACTGTTCCAGCAAATGGTGTCAAGTCTACACACAGCAGTATGAGCCTTACCTAAAAGACCCTTCAGCCTATCCTAAAGTACAGATGTTGCTGAGCATGCTGTACTCTGGACCATACTACATCATTACTCTCTATGGGCTGATGGTCCCGGGATGTGAGTGGATGCCGGATCTGACTCTTGTACACTCTGGAGCACTGGCACAGGCCCAGTTCACTCATATCGGTGCATCACTTCACACACGGACGCCGTTTTCCTACAGAGTGCCTGCTGATAGCCAGCCTGTCTTCTTGCTGGTTAATGTCCTGTACGCTCTAGTGCCTCAGGCTCTGTGCTACCGCTGCTGCTCCAGGCCTGCCTTCTTTCTCAGGCCAACGCCAGAAAAGAAGActgaataaagagagagagagagaaagagtgccAGGAATGTCAAGGATGCCTAAATAAAAGGTTGTAATACTTGCAAAGTACTGCTCTGTGTTTGCAGTTATTAGCAGTTGTCAGTTGCTTTTTTTGGAGCTTCCACCTCTTTAACTTAGTCTCGCTGACCtgtctccacagtgctgcgaagTAACCTTTAACCTTGATGAGGGCTTAAGGAGGGTATCAAAAGGAGTTTGAtactggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgattcTCTTAGCCTTCTTGCAGCACCCGGTGTAAATTGTATATGTCtattgtatattttatatatatatatagcaagcACAGGAAGGCACAAACAGTGTCACTGTATGGATAATAGTGTGTATGGGAATCAAACTACTTGACAATACTCATTGTTCTTATATTTTTGGTAAGTTGGTTACAAAAACTGCTTTCTTGTTGACACTGAGGTTTCTGTGCAGTGTTTTTTTGCTAGTGG
>XM_039795745.1
ATTCCTCAGTGTGGTGAATCTGATCATTGGGCTGGAACAGGACAACATCATTGATGGATTTGTGACGTTTTACCTCAGAGAGATCCACATATTAACACAGCACATGGACACATGATCTCCTATTGGGATGGCTGTGTGCATTATCTCATCTATCTGCTAATGATTGCTGCAATTACTTGGGGGGACAGTTACAGAGCCATTGGACTCTACTGGGTGGGATCTTTTCTCATGCGTGCCATAGTCTACATTCTTGGGAATGCTGTGGGGAAATATGGGACCCATGTtagtcctctcttcctcctccacatgCTATATATCTCAGTGTCTGTCTGGGCCTGCTTCCGCACCTTCAGCCAGCCCTCCACATGGGATGCTCAGTTTCCTaGCATCCAGGAGGCggaaagaaaatgtttactCCACAGACCTCTGGACCTACTGTTCATCATCTACCTCATCCTTGCTTTTGCTTTCTGTGTCTTCAGAGGCCTGgttGTTCTGGACTGTTCCAGCAAATGGTGTCAAGTCTACACACAGCAGTATGAGCCTTACCTAAAAGACCCTTCAGCCTATCCTAAAGTACAGATGTTGCTGAGCATGCTGTACTCTGGACCATACTACATCATTACTCTCTATGGGCTGATGGTCCCGGGATGTGAGTGGATGCCGGATCTGACTCTTGTACACTCTGGAGCACTGGCACAGGCCCAGTTCACTCATATCGGTGCATCACTTCACACACGGACGCCGTTTTCCTACAGAGTGCCTGCTGATAGCCAGCCTGTCTTCTTGCTGGTTAATGTCCTGTACGCTCTAGTGCCTCAGGCTCTGTGCTACCGCTGCTGCTCCAGGCCTGCCTTCTTTCTCAGGCCAACGCCAGAAAAGAAGActgaataaagagagagagagagaaagagtgccAGGAATGTCAAGGATGCCTAAATAAAAGGTTGTAATACTTGCAAAGTACTGCTCTGTGTTTGCAGTTATTAGCAGTTGTCAGTTGCTTTTTTTGGAGCTTCCACCTCTTTAACTTAGTCTCGCTGACCtgtctccacagtgctgcgaagTAACCTTTAACCTTGATGAGGGCTTAAGGAGGGTATCAAAAGGAGTTTGAtactggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgattcTCTTAGCCTTCTTGCAGCACCCGGTGTAAATTGTATATGTCtattgtatattttatatatatatatagcaagcACAGGAAGGCACAAACAGTGTCACTGTATGGATAATAGTGTGTATGGGAATCAAACTACTTGACAATACTCATTGTTCTTATATTTTTGGTAAGTTGGTTACAAAAACTGCTTTCTTGTTGACACTGAGGTTTCTGTGCAGTGTTTTTTTGCTAGTGG

Function

symbol description
tm6sf1 Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane.

NR:

description
PREDICTED: transmembrane 6 superfamily member 1 isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795743.1 True 1816 mRNA 0.45 10 18659862 18663990
XM_039795745.1 False 1397 mRNA 0.46 8 18660644 18663990

Neighbor

gene id symbol gene type direction distance location
LOC120555930 NA coding upstream 17063 18639282 ~ 18642799 (+)
LOC120555641 whamm,LOC102778540 coding upstream 54892 18585773 ~ 18604970 (+)
pde8a pde8a,LOC100690151,LOC102210709,LOC101463592,LOC102780154 coding upstream 102527 18505528 ~ 18557335 (+)
gatm gatm,LOC102780634 coding upstream 168794 18486062 ~ 18491068 (+)
hdc hdc,LOC106587893,LOC103379072 coding upstream 201310 18454656 ~ 18458552 (+)
zrsr2 zrsr2 coding downstream 517 18664507 ~ 18670988 (+)
phka2 phka2 coding downstream 13351 18677341 ~ 18698498 (+)
rs1a rs1,LOC101067478 coding downstream 57379 18721369 ~ 18728722 (+)
scml2 scml2 coding downstream 106392 18770382 ~ 18797783 (+)
ace2 ace2 coding downstream 211962 18875952 ~ 18889502 (+)
G28195 homer2 non-coding upstream 44053 18607305 ~ 18615809 (+)
G28163 usp8,LOC102785891 non-coding upstream 214566 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 478661 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 740666 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 770645 17888761 ~ 17889217 (+)
LOC120556026 NA non-coding downstream 182279 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 390134 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 393556 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 407830 19071820 ~ 19072036 (+)
LOC120555698 NA non-coding downstream 423205 19087195 ~ 19091823 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 83920 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 916414 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 3173411 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3213370 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3606240 15047877 ~ 15053622 (+)
LOC120555697 NA other downstream 410318 19074308 ~ 19087064 (+)
G28581 NA other downstream 823256 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 848366 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1108129 19772119 ~ 19993954 (+)
G28770 NA other downstream 2047114 20711104 ~ 20761147 (+)

Expression


Co-expression Network